|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005886 ID=TCONS_00005886|Name=TCONS_00005886|organism=Clytia hemisphaerica|type=transcript|length=1719bpRun BLAST on NCBI protein sequence of TCONS_00005886-protein >TCONS_00005886-protein ID=TCONS_00005886-protein|Name=TCONS_00005886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp MKSIVNAVWTLWTDWTSCSGSCGTGSQIRTRFCSPPQHGGAACGEPVPEDRun BLAST on NCBI transcript from alignment at sc0000061:72908..112986- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005886 ID=TCONS_00005886|Name=TCONS_00005886|organism=Clytia hemisphaerica|type=transcript|length=40079bp|location=Sequence derived from alignment at sc0000061:72908..112986- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000061:72908..112986- >TCONS_00005886 ID=TCONS_00005886|Name=TCONS_00005886|organism=Clytia hemisphaerica|type=CDS|length=8592bp|location=Sequence derived from alignment at sc0000061:72908..112986- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00005886 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 1.438e-24 Identity = 53/118 (44.92%), Postives = 68/118 (57.63%), Query Frame = 3
Query: 486 VPGNWSTWTGFGECNVTCGDGMRNSTRKCDNPVPQNGGRKCEGPEVSYEECGEPKKCPVHGGWSSWSLYSECQGACQYGDILISRSYIRTCDNPEPNYGGRKCAGAKFKSEKCDLKPC 839
+ G W+TW + C+V+CG G R TR C +PVPQ GGRKCEG +V + C CP HG WS WS + C C G + R Y RTCDNP P+ GGR C G + ++C+ C
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNS-DPCPTHGNWSPWSGWGTCSRTCNGGQM---RRY-RTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 2 Score: 107.071 bits (266), Expect = 6.679e-24 Identity = 52/140 (37.14%), Postives = 80/140 (57.14%), Query Frame = 3
Query: 423 EFNCDANSPPGQKRL-CDCVPSVPGNWSTWTGFGECNVTCGDGMRNSTRKCDNPVPQNGGRKCEGPEVSYEECGEPKKCPVHGGWSSWSLYSECQGACQYGDILISRSYIRTCDNPEPNYGGRKCAGAKFKSEKCDLKPC 839
EF C A + G + + V G +S W+ + C+VTCG G++ +R C+ P+P NGG+ C+G ++ C + K CPV G WS WSL+ EC +C G+ ++ RTC+NP +GGR C G + C+++PC
Sbjct: 4506 EFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNC-QNKPCPVDGSWSEWSLWEECTRSCGRGN----QTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640 HSP 3 Score: 104.375 bits (259), Expect = 4.782e-23 Identity = 50/126 (39.68%), Postives = 72/126 (57.14%), Query Frame = 3
Query: 465 LCDCVP-SVPGNWSTWTGFGECNVTCGDGMRNSTRKCDNPVPQNGGRKCEGPEVSYEECGEPKKCPVHGGWSSWSLYSECQGACQYGDILISRSYIRTCDNPEPNYGGRKCAGAKFKSEKCDLKPC 839
+C+ P V G WS W +G C+ +CG G + R C+NP P GG C+G E + C E + CP+HG W++W+ +S C +C G +R R C +P P YGGRKC G+ +S+ C+ PC
Sbjct: 4634 MCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNE-RNCPIHGKWATWASWSACSVSCGGG----ARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 4 Score: 102.449 bits (254), Expect = 2.117e-22 Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 3
Query: 492 GNWSTWTGFGECNVTCGDGMRNSTRKCDNPVPQNGGRKCEGPEVSYEECGEPKKCPVHGGWSSWSLYSECQGACQYGDILISRSYIRTCDNPEPNYGGRKCAGAKFKSEKCDLKPC 839
GNWS W+G+G C+ TC G R CDNP P NGGR C GP+ + C CPV G W SW +S+C +C G+ ++ R CD+P P GGR C G + +C+++ C
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNT-DMCPVDGSWGSWHSWSQCSASCGGGE----KTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 The following BLAST results are available for this feature:
BLAST of TCONS_00005886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.