TCONS_00005886-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005886-protein
Unique NameTCONS_00005886-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005886-protein ID=TCONS_00005886-protein|Name=TCONS_00005886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MKSIVNAVWTLWTDWTSCSGSCGTGSQIRTRFCSPPQHGGAACGEPVPED
YGEMIFKHVENRDCIHNASCPGFRMEEGNCTHICHEQNLASNFLMKKNGS
DIADAAGIPCEDYTDHEHLYEPAINEDGNCLGFNKVPVEFNCDANSPPGQ
KRLCDCVPSVPGNWSTWTGFGECNVTCGDGMRNSTRKCDNPVPQNGGRKC
EGPEVSYEECGEPKKCPVHGGWSSWSLYSECQGACQYGDILISRSYIRTC
DNPEPNYGGRKCAGAKFKSEKCDLKPCQSVKADTVVQFYGERFSTELKDL
NSQKAKDLKEKLEKGIREEYLANHPQIAEDSDYIKVTVHSFSDGIGFEPK
AITKKKN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003359XLOC_003359Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005886TCONS_00005886Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 222..278
e-value: 0.052
score: 20.7
coord: 164..217
e-value: 3.2E-10
score: 49.9
coord: 9..71
e-value: 1.2E-12
score: 58.0
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 3..71
e-value: 8.1E-10
score: 38.5
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 11..49
e-value: 4.6E-7
score: 29.9
coord: 165..216
e-value: 1.1E-8
score: 35.0
coord: 223..277
e-value: 4.7E-4
score: 20.2
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 218..277
e-value: 6.1E-10
score: 38.7
coord: 160..216
e-value: 4.0E-13
score: 49.0
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 6..71
score: 11.201
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 219..278
score: 9.891
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 161..217
score: 12.35
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 159..211
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 5..46
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 216..277

Blast
[Close]
BLAST of TCONS_00005886-protein vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 8.378e-29
Identity = 94/311 (30.23%), Postives = 134/311 (43.09%), Query Frame = 0 
Query:    6 NAVWTLWTDWTSCSGSCGTGSQIRTRFCS--PPQHGGAAC-GEPVPEDY--------GEMIFK----------------HVENRDCIHNASCPGFRMEEGNC-THICHEQNLASNFLMKKNGSDIADAAGIPCED--YTDHEHLYEPAINEDGNCLGFNKVPVEF-------NCDANSPPGQKRLCD--CVPSVPGNWSTWTGFGECNVTCGDGMRNSTRKCDNPVPQNGGRKCEGPEVSYEECGEPKKCPVHGGWSSWSLYSECQGACQYGDILISRSYIRTCDNPEPNYGGRKCAGAKFKSEKCDLKPC 277
            N  WT WT W+ CS +CG G Q+R R CS   P+HGG  C G+   E Y          M +                     R C +   C G  +E  +C T+ C E    + +       +I+D  G   +   YT    L +P + E    +G  ++ + +        C  +   G           +V G WS WT + +C+  C  G+RN  R C+NP P+ GG  C GP + Y+EC     CPV G WS WS +++C   C  G  + +RS    C NP P YGG  C G   +   C+ +PC
Sbjct:  595 NGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYCNEHLLCPPHMFWTGWGPWERCTAQCGGGIQARRRICENGPDCAGCNVEYQSCNTNPCPELKKTTPW-TPWTPVNISDNGGHYEQRFRYTCKARLADPNLLE----VGRQRIEMRYCSSDGTSGCSTDGLSGDFLRAGRYSAHTVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMPCLGPSLEYQECN-ILPCPVDGVWSCWSPWTKCSATCGGGHYMRTRS----CSNPAPAYGGDICLGLHTEEALCNTQPC 895
The following BLAST results are available for this feature:
BLAST of TCONS_00005886-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEM5A8.378e-2930.23Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3[more]
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