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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005872 ID=TCONS_00005872|Name=TCONS_00005872|organism=Clytia hemisphaerica|type=transcript|length=726bp
CACAAATATCCcaacaaaatcttttattttgccATGCGATTTTTATAGCT
ACCTGATGGAAACCAGGTCTGGTTATCAGAAGAGAGATTTCAAGCACCAG
AGTTATTATTTCAACCATCATTGATTGGGAAAGAACAACCTGGTTTTCAC
ATGTTTCTTGAAAAATCAGTTCAAAAATGCGAGATTGATTTACGTTCGGG
TCTTTATGAAAATATCATACTGGCAGGTGGCAATTCGATGATACCTGGCA
TACACGAAAGAATGATGACCGAACTTACAGCTCTAGTTAGACCAAAGACA
TCAAGAACCATACGAATTCATGAGAATAAACATGGAATAGATTCAGTGTG
GAAAGGTGCTAGTGTGTTATCATCTTTATCTACTTTCGAAAGCATGCTGA
TAACACGAGAGGAATATTTTGAGTATGGTAATAAGATTGTACACATGAAA
TGTTTTTCATAAAGAGTTTCATCGACATCGACATAGCATATCAGCATAGT
GACTTTGAatggtgaaaaacccgacccttgcCGTCAGCACATACTCAGCA
CCTATTTTTGAAGTGCGATTTTTCTATCGAGTCTTAAATGGAGAGGAAAT
CAAAGTCAATAGTCCTGTGGGGCTGAAATGTaacgaaattttggtgaaat
ttttgaatcaaaattttcatatctgtttccaaaatttaagaaaaagtaCG
CAATTTAAgcaaattttaattctttt Run BLAST on NCBI protein sequence of TCONS_00005872-protein >TCONS_00005872-protein ID=TCONS_00005872-protein|Name=TCONS_00005872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MFLEKSVQKCEIDLRSGLYENIILAGGNSMIPGIHERMMTELTALVRPKT
SRTIRIHENKHGIDSVWKGASVLSSLSTFESMLITREEYFEYGNKIVHMK
CFS Run BLAST on NCBI transcript from alignment at sc0000061:1000407..1002539+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005872 ID=TCONS_00005872|Name=TCONS_00005872|organism=Clytia hemisphaerica|type=transcript|length=2133bp|location=Sequence derived from alignment at sc0000061:1000407..1002539+ (Clytia hemisphaerica)
CACAAATATCCcaacaaaatcttttattttgccATGCGATTTTTATAGCT
ACCTGATGGAAACCAGGTCTGGTTATCAGAAGAGAGATTTCAAGCACCAG
AGTTATTATTTCAACCATCATTGATTGGGAAAGAACAACCTGGTTTTCAC
ATGTTTCTTGAAAAATCAGTTCAAAAATGCGAGATTGATTTACGTTCGGG
TCTTTATGAAAATATCATACTGGCAGGTAAGATTTAACTTGTGTTACCTC
TCCCTCTCATTAACTCGAacccttaaaggttttatttttacataagtgtt
cccatttcatatcggacacatatttcataccaggacagtgtctccctatt
gttatactGTGCTGaataagcaaaaaattgttttcgttTCCTCTTTTTGA
ACagtcttgctccacatccgtgtcaattaaATGTGAACGAGTAAACAAAT
GGAATCactcttattttaaaaacaaaaccttcaacTCGAAAAAGTTTGCT
CTCTACAGTTAACAATACCTCATAAACTGGGAGTTCGaatacaaatttgt
tcaagttatAGAGACTTCACTCTGTTTATTGAGAAAAATTGGCGTGTATC
AGACTGCTTCAGAGGGATTTTGCACCTGAATTTGCTCGAAAAACTTTGAC
ACAATCTTGCAGAACACGGgagtgcttgaaaaaaaaacgcgAATCTAACT
CTAGCTGTCTGTTATAATAAGGTATAACCGAGAACTAGAGTCTAATCTCA
TATGTAGGATTTAAGGTCATTTATTTCCTACACACGTTGCGCGGCTTgcg
tggttttcatacaaaTAGATTTGAAATACAGTTGAATtcatgtaattcga
actccTATAATTCGGAAACTCACTTAATTCGAACAGATTCTGTGGTCCCC
TCAGAATtgaccttgaaaaccttacaaggaaactcctataattcgaaccc
atgtaattcgaaaaatcatGTAAATCGAACAGATTTTCCAGTCCCAACAA
GAAATTTTaatcatgtaattcgaatttttgaatttttttgagtttttgaa
gcTGACAAACTTGACATTTTGTCCATCGAACGTTTTCGAATGCTTTCTTT
TTTACATTCAATCTCCGAAGAGATTTCCAAGAAACGAGAGCAGAGAtgaa
acaatcaaatcaaagacttttttgaaaaattatcaattaagtatttcatt
attctaactcgaaaatacaaaaaattgctcaaaagtAAACCTGGGAAAGA
CTTTTTTCATCGAATTAGGTCAGAAATACGAAAACTTATCTAGTTcgaaa
ctcatgtaattcgaacaaaaattctcggtcccttgagaattcgaattaca
tgagtttaACTGTAACATTTATCGCTAGAAAtcgaaaaaatgttaaaacg
TGAAAACGAAGAGAAAAGTGGTATATTCAATCTGTCATCCGAAATGCGTC
GCAAATTTTAAGGCATACATTTTCCTTACCTAGAAAAGGtagaagattcc
tctctagtcTTCCGCTTTGAAACTCTCcctaatttgattttaaagggacc
aaaaattttcttcgaattagagaaagattcgaataatagaggttcgaatt
aattGACTTTATTGTTCATTATTTCCAATCTAGGTGGCAATTCGATGATA
CCTGGCATACACGAAAGAATGATGACCGAACTTACAGCTCTAGTTAGACC
AAAGACATCAAGAACCATACGAATTCATGAGAATAAACATGGAATAGATT
CAGTGTGGAAAGGTGCTAGTGTGTTATCATCTTTATCTACTTTCGAAAGC
ATGCTGATAACACGAGAGGAATATTTTGAGTATGGTAATAAGATTGTACA
CATGAAATGTTTTTCATAAAGAGTTTCATCGACATCGACATAGCATATCA
GCATAGTGACTTTGAatggtgaaaaacccgacccttgcCGTCAGCACATA
CTCAGCACCTATTTTTGAAGTGCGATTTTTCTATCGAGTCTTAAATGGAG
AGGAAATCAAAGTCAATAGTCCTGTGGGGCTGAAATGTaacgaaattttg
gtgaaatttttgaatcaaaattttcatatctgtttccaaaatttaagaaa
aagtaCGCAATTTAAgcaaattttaattctttt Coding sequence (CDS) from alignment at sc0000061:1000407..1002539+ >TCONS_00005872 ID=TCONS_00005872|Name=TCONS_00005872|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0000061:1000407..1002539+ (Clytia hemisphaerica)
ATGTTTCTTGAAAAATCAGTTCAAAAATGCGAGATTGATTTACGTTCGGG
TCTTTATGAAAATATCATACTGGCAGGTGGCAATTCGATGATACCTGGCA
TACACGAAAGAATGATGACCGAACTTACAGCTCTAGTTAGACCAAAGACA
TCAAGAACCATACGAATTCATGAGAATAAACATGGAATAGATTCAGTGTG
GAAAGGTGCTAGTGTGTTATCATCTTTATCTACTTTCGAAAGCATGCTGA
TAACACGAGAGGAATATTTTGAGTATGGTAATAAGATTGTACACATGAAA
TGTTTTTCATAAATGTTTCTTGAAAAATCAGTTCAAAAATGCGAGATTGA
TTTACGTTCGGGTCTTTATGAAAATATCATACTGGCAGGTGGCAATTCGA
TGATACCTGGCATACACGAAAGAATGATGACCGAACTTACAGCTCTAGTT
AGACCAAAGACATCAAGAACCATACGAATTCATGAGAATAAACATGGAAT
AGATTCAGTGTGGAAAGGTGCTAGTGTGTTATCATCTTTATCTACTTTCG
AAAGCATGCTGATAACACGAGAGGAATATTTTGAGTATGGTAATAAGATT
GTACACATGAAATGTTTTTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005872-exon-sc0000061-1491911889:1000407..1000632 | TCONS_00005872-exon-sc0000061-1491911889:1000407..1000632 | Clytia hemisphaerica | exon |
| TCONS_00005872-exon-sc0000061-1510915933:1000407..1000632 | TCONS_00005872-exon-sc0000061-1510915933:1000407..1000632 | Clytia hemisphaerica | exon |
| TCONS_00005872-exon-sc0000061-1575043694:1000407..1000632 | TCONS_00005872-exon-sc0000061-1575043694:1000407..1000632 | Clytia hemisphaerica | exon |
| TCONS_00005872-exon-sc0000061-1491911889:1002040..1002539 | TCONS_00005872-exon-sc0000061-1491911889:1002040..1002539 | Clytia hemisphaerica | exon |
| TCONS_00005872-exon-sc0000061-1510915933:1002040..1002539 | TCONS_00005872-exon-sc0000061-1510915933:1002040..1002539 | Clytia hemisphaerica | exon |
| TCONS_00005872-exon-sc0000061-1575043694:1002040..1002539 | TCONS_00005872-exon-sc0000061-1575043694:1002040..1002539 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:1000407..1002539 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004000 | Actin |
Blast
BLAST of TCONS_00005872 vs. Swiss-Prot (Human)
Match: ACTS (Actin, alpha skeletal muscle OS=Homo sapiens GN=ACTA1 PE=1 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.078e-36 Identity = 68/136 (50.00%), Postives = 87/136 (63.97%), Query Frame = 1
Query: 49 LPDGNQVWLSEERFQAPELLFQPSLIGKEQPGFHMFLEKSVQKCEIDLRSGLYENIILAGGNSMIPGIHERMMTELTALVRPKTSRTIRIHENKHGIDSVWKGASVLSSLSTFESMLITREEYFEYGNKIVHMKCF 456
LPDG + + ERF+ PE LFQPS IG E G H S+ KC+ID+R LY N +++GG +M PGI +RM E+TAL P T + I+I SVW G S+L+SLSTF+ M IT++EY E G IVH KCF
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALA-PSTMK-IKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
The following BLAST results are available for this feature:
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