TCONS_00005866 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005866
Unique NameTCONS_00005866
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length586

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005866 ID=TCONS_00005866|Name=TCONS_00005866|organism=Clytia hemisphaerica|type=transcript|length=586bp
GTTTTCTCATTATTGTTCAAAATGAAGGTTCAAACACCAACCAGATTATT
ACAGGTATGTTCTCTTATGTAATGTTTACTACTCTCTTGCTATCTCCTTG
ATGATTAAAAGGAATCAGGCATTTTATCAGAATAATTTCGTGTGCGAAAT
GTGTGTTCAGGCTTTtatattcaacaaaaaaatttattcaaacagCAAGA
GGTTGACTAGAATAGCCTCTAtttgtattgttggatattttgatactttt
tctgcataaaattatagtgaaattttatatttgttgagcttttttaaaGG
AGTCTCGATCATGCTCAGTTTTTTTAGTTTACATCAGTACATACCATCAG
ACGACataattaatcaaaattttcaaaggttgctgcactaaaattgtgag
tattcgattaagttccaCTTAAACTTTGACAACAGgaaatgttcgacaaa
ttcaaccaaaactctgttcaacaaaatttgacaacaagaaatgtttgaca
aattcgacaaaaattcCGTTCAACAAAGTTGAAAACGAAACAAATTCTTT
CAACGGTCACACTCTTTAAGAGAAAACGCAAGTTCA
Run BLAST on NCBI

transcript from alignment at sc0000061:938741..939407+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005866 ID=TCONS_00005866|Name=TCONS_00005866|organism=Clytia hemisphaerica|type=transcript|length=667bp|location=Sequence derived from alignment at sc0000061:938741..939407+ (Clytia hemisphaerica)
GTTTTCTCATTATTGTTCAAAATGAAGGTTCAAACACCAACCAGATTATT ACAGGTATGTTCTCTTATGTAATGTTTACTACTCTCTTGCTATCTCCTTG ATGATTAAAAGGAATCAGGCATTTTATCAGAATAATTTCGTGTGCGAAAT GTGTGTTCAGGCTTTtatattcaacaaaaaaatttattcaaacagCAAGA GGTTGACTAGAATAGCCTCTAtttgtattgttggatattttgatactttt tctgcataaaattatagtgaaattttatatttgttgagcttttttaaaGG AGTCTCGATCATGCTCAGTTTTTTTAGTTTACATCAGTACATACCATCAG ACGACataattaatcaaaattttcaaaggttgCTGCACTAAAACTTAAAC TTTGACAACAGgaaatgttcgacaaattcgaccAAAACTCGNaatcaaaa ttttcaaaggttgctgcactaaaattgtgagtattcgattaagttccaCT TAAACTTTGACAACAGgaaatgttcgacaaattcaaccaaaactctgttc aacaaaatttgacaacaagaaatgtttgacaaattcgacaaaaattcCGT TCAACAAAGTTGAAAACGAAACAAATTCTTTCAACGGTCACACTCTTTAA GAGAAAACGCAAGTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003350XLOC_003350Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005866-exon-sc0000061-1491911889:938741..939118TCONS_00005866-exon-sc0000061-1491911889:938741..939118Clytia hemisphaericaexon
TCONS_00005866-exon-sc0000061-1510915933:938741..939118TCONS_00005866-exon-sc0000061-1510915933:938741..939118Clytia hemisphaericaexon
TCONS_00005866-exon-sc0000061-1575043694:938741..939118TCONS_00005866-exon-sc0000061-1575043694:938741..939118Clytia hemisphaericaexon
TCONS_00005866-exon-sc0000061-1491911889:939200..939407TCONS_00005866-exon-sc0000061-1491911889:939200..939407Clytia hemisphaericaexon
TCONS_00005866-exon-sc0000061-1510915933:939200..939407TCONS_00005866-exon-sc0000061-1510915933:939200..939407Clytia hemisphaericaexon
TCONS_00005866-exon-sc0000061-1575043694:939200..939407TCONS_00005866-exon-sc0000061-1575043694:939200..939407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:938741..939407 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.54085 2.20242 3.30308 3.02306 5.71079 2.90821 3.26666 3.51127 1.98252 1.76808 1.23944 1.75486 1.18914 0.519974 2.40463 2.63788 2.11934 2.75152 1.20043 1.98893 3.09354 3.46164 1.07899 2.35431 0.505184 3.60692 4.64534 3.30509 1.56675 2.02194
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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