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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005864 ID=TCONS_00005864|Name=TCONS_00005864|organism=Clytia hemisphaerica|type=transcript|length=458bp
AGGAAATACATGCTGCTCCAAGAAGCGACGGGGAAAACGGTGAAAAAAGG
GAGCAGCTTTTATATCAAACCTGGCACGAAAGTTCAGGCTCTAGTAACTG
GTGATGACTTATGGGACTTGGGATTAGAAGTTTACGCGACCGATTGTTAT
ATCCATTCACTACAAGATGACACAGCAAGAAGACCTAAAAAGCGCTATCT
CATGAAAAACTCATGTATTGTGGACAAACGTTTGACAAAGCAATGGAAGC
CGAGAGGACAACTCCTTCAATACACTGGCGAAGAAAAATCACCATATTTC
TTTCGGTGTGATTTAATCGTATGCCGATGGGACGAAGAGTGTGGTTATTG
TAATTAAAGTAGTTTGACTAGATATTCTATAcgaataaaatatttcaaat
ccaTCATCAttcttcttcattcttttccaatacacgctttcttttataag
aatacttt Run BLAST on NCBI protein sequence of TCONS_00005864-protein >TCONS_00005864-protein ID=TCONS_00005864-protein|Name=TCONS_00005864-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
RKYMLLQEATGKTVKKGSSFYIKPGTKVQALVTGDDLWDLGLEVYATDCY
IHSLQDDTARRPKKRYLMKNSCIVDKRLTKQWKPRGQLLQYTGEEKSPYF
FRCDLIVCRWDEECGYCN Run BLAST on NCBI transcript from alignment at sc0000061:797441..800268+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005864 ID=TCONS_00005864|Name=TCONS_00005864|organism=Clytia hemisphaerica|type=transcript|length=2828bp|location=Sequence derived from alignment at sc0000061:797441..800268+ (Clytia hemisphaerica)
AGGAAATACATGCTGCTCCAAGAAGCGACGGGGAAAACGGTGAAAAAAGG
GAGCAGCTTTTATATCAAACCTGGCACGAAAGTTCAGGTAAAACgatacc
atagatttataaaaacttgaattgctagatatcgtgcttttgctgaaaag
agtGCCGAGGTTAGTCATGTGACATCACAATAAAATTTCAGCGTTTGAct
aatcagaagcttcgcgggttttcgaaaacaatagcagcaatattttctcc
gatatatactttttttgcttggaagagcttaaagcacgccatctagccct
tcgggctttataaatctatgaacGATACCCCttcataggcggttttagac
catgttgaacttatcagaggaagagatttgtaattgtaattctattgtct
tttaacaagcgttgcactccttcgcatgtttccgacgtacttgctctttg
tcttaaatccgccagtggCCTTATCAgtatctcataacagatcatctaCA
CTGCGCACAACACACCCCGCTTATAATAGATATGACAAATGTGACATGGC
TAGCGCGGAGTAACAAGAATCTACACGGAAATTACCTTATCACAAACTAT
TTAAGACTCCTTATCCACTGGAGAAAATCGGCCAAAGAAATGCAGATGat
atggagtttttataagatactttggACTAATGGACGTTGTGTGATAGGTT
TGACATGGACATAATAGAAATTACATGGACTGTTAACTTTTTCTCTATCA
TTAAAGTTGCattgaaattcttttcaaatctGCTTTCTTTATTATCGAAT
CATTGTCAGCAAGACAAGCTCATTTCACTGGaagtttttggttttttttg
gaaaatttaagaGCTTTTATAACCTTATAAGAACACAAAGACTTATCTAA
AATGGTTCTTAGCCTAATTATAGAGATTCCGTACACGTAAGATCTTTTTA
AAGATTAGAGAACATAGCCTGATTAAAGGGTGACAAATTTATCCTAATTT
TTTAATATAACATTAAATTGTTCGAAAATTCACGGATCgaattttctttt
atccttCTAAAAAAACGTTTTCATACGTGTTATAAAACGATATGTTACAA
TAGAATGAATAAAAGTTAACAGTCCATCTAATTTCTATTAAGTCCATGGT
TTGAGAAATCTTGTTTTTTAATAGGCTCTAGTAACTGGTGATGACTTATG
GGACTTGGGATTAGAAGTTTACGCGACCGATTGTTATATCCATTCACTAC
AAGATGACACAGCAAGAAGACCTAAAAAGCGCTATCTCATGAAAAACTCG
TAAGTAACATCGCAATCCTTATATTCTAGAAGGCCATGATTAATTATGTC
TAATTTGTATTGTAATAGACTGACACGCCAGTCGGAGAGGAAcagtatca
cgcgggaaaagtgagcgtaggagttaggtaagcgtaagaagaaattttgt
cggcgacAAGGGCTGGAAGCCCTATTAATCAGCAGTCTCTCGCCAACTTT
TGCTagctctcctacgcagctcctttTCTAGAAAAcacccgccgccttta
tgttcacgctctctgacatgattaattagcagactagtttgctagtctag
taTTGTAAAAATGTAAAGGTTTTCTAAGCTCAAGAGCTAAATAAAATTTG
CCGCCTGACTGAAATTTTTCCATAAAGGGCAAGAAGATATTTTTATAAAG
TGTTTTCTTCGAGACCTGCCATTGATACCTTATGTATCAATCAGTGGCGT
TGTGGTAGGggggccatgccccccccccagcggagcttttttgaaggggc
gccaaggagcaaggggcgccaaaagagacttttttaaacgccccaatctt
aaaaatcatactttatgcgccttaaattgggcccaggaccaattttactg
agataattttaaaatatttgcaatttttttcgctcgcaaaacagttaatt
ggtaacttctttgcaatctacctaatttacaagtttttttgtgtacaata
tagcattatcaaatgaaaatctaactgcgcgccaagaccaatttgctgac
aacaatattgaaatcataaaacataaattttttctttaagtttcttatca
ctctagcaagtgtcaaagtTGTCTATcttttttagtgatttagggtatca
aagagtttagaaactggtgggCTGGGGCACCACTTCggaaaattgggggg
gggggcatttaaaaaaattgactttggcccctccagaaaaattttcccac
aacgccactggtatcaatcattaaaaaaagtATGGTCCTATCTTGGGAGC
GCACCCGTGGAGGCCCAGGCTATTACTCCTGAAAAGCGAAAAAATCAATT
CGCTCACTTTAAAATtccttcttgatttttttataaaatggcATTCTACA
AAGGgatgatttttctttcttatatGTTTTTGCAATCATACTCAAAGACG
GAAATATATGCCCTAAATCAACAGCCAACCCCCTGTGTTTCTTCTCAAGT
ACGTCCCAGGTAAAAGGTTTCATTTGTATGCCACCCGAATATACCCTAAA
AATAATCATAACACGCTTCAAATTGATTCTAGATGTATTGTGGACAAACG
TTTGACAAAGCAATGGAAGCCGAGAGGACAACTCCTTCAATACACTGGCG
AAGAAAAATCACCATATTTCTTTCGGTGTGATTTAATCGTATGCCGATGG
GACGAAGAGTGTGGTTATTGTAATTAAAGTAGTTTGACTAGATATTCTAT
AcgaataaaatatttcaaatccaTCATCAttcttcttcattcttttccaa
tacacgctttcttttataagaatacttt Coding sequence (CDS) from alignment at sc0000061:797441..800268+ >TCONS_00005864 ID=TCONS_00005864|Name=TCONS_00005864|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at sc0000061:797441..800268+ (Clytia hemisphaerica)
AGGAAATACATGCTGCTCCAAGAAGCGACGGGGAAAACGGTGAAAAAAGG
GAGCAGCTTTTATATCAAACCTGGCACGAAAGTTCAGGCTCTAGTAACTG
GTGATGACTTATGGGACTTGGGATTAGAAGTTTACGCGACCGATTGTTAT
ATCCATTCACTACAAGATGACACAGCAAGAAGACCTAAAAAGCGCTATCT
CATGAAAAACTCATGTATTGTGGACAAACGTTTGACAAAGCAATGGAAGC
CGAGAGGACAACTCCTTCAATACACTGGCGAAGAAAAATCACCATATTTC
TTTCGGTGTGATTTAATCGTATGCCGATGGGACGAAGAGTGTGGTTATTG
TAATTAAAGGAAATACATGCTGCTCCAAGAAGCGACGGGGAAAACGGTGA
AAAAAGGGAGCAGCTTTTATATCAAACCTGGCACGAAAGTTCAGGCTCTA
GTAACTGGTGATGACTTATGGGACTTGGGATTAGAAGTTTACGCGACCGA
TTGTTATATCCATTCACTACAAGATGACACAGCAAGAAGACCTAAAAAGC
GCTATCTCATGAAAAACTCATGTATTGTGGACAAACGTTTGACAAAGCAA
TGGAAGCCGAGAGGACAACTCCTTCAATACACTGGCGAAGAAAAATCACC
ATATTTCTTTCGGTGTGATTTAATCGTATGCCGATGGGACGAAGAGTGTG
GTTATTGTAATTAAAGGAAATACATGCTGCTCCAAGAAGCGACGGGGAAA
ACGGTGAAAAAAGGGAGCAGCTTTTATATCAAACCTGGCACGAAAGTTCA
GGCTCTAGTAACTGGTGATGACTTATGGGACTTGGGATTAGAAGTTTACG
CGACCGATTGTTATATCCATTCACTACAAGATGACACAGCAAGAAGACCT
AAAAAGCGCTATCTCATGAAAAACTCATGTATTGTGGACAAACGTTTGAC
AAAGCAATGGAAGCCGAGAGGACAACTCCTTCAATACACTGGCGAAGAAA
AATCACCATATTTCTTTCGGTGTGATTTAATCGTATGCCGATGGGACGAA
GAGTGTGGTTATTGTAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005864-exon-sc0000061-1491911889:797441..797527 | TCONS_00005864-exon-sc0000061-1491911889:797441..797527 | Clytia hemisphaerica | exon |
| TCONS_00005864-exon-sc0000061-1510915933:797441..797527 | TCONS_00005864-exon-sc0000061-1510915933:797441..797527 | Clytia hemisphaerica | exon |
| TCONS_00005864-exon-sc0000061-1575043694:797441..797527 | TCONS_00005864-exon-sc0000061-1575043694:797441..797527 | Clytia hemisphaerica | exon |
| TCONS_00005864-exon-sc0000061-1491911889:798615..798739 | TCONS_00005864-exon-sc0000061-1491911889:798615..798739 | Clytia hemisphaerica | exon |
| TCONS_00005864-exon-sc0000061-1510915933:798615..798739 | TCONS_00005864-exon-sc0000061-1510915933:798615..798739 | Clytia hemisphaerica | exon |
| TCONS_00005864-exon-sc0000061-1575043694:798615..798739 | TCONS_00005864-exon-sc0000061-1575043694:798615..798739 | Clytia hemisphaerica | exon |
| TCONS_00005864-exon-sc0000061-1491911889:800023..800268 | TCONS_00005864-exon-sc0000061-1491911889:800023..800268 | Clytia hemisphaerica | exon |
| TCONS_00005864-exon-sc0000061-1510915933:800023..800268 | TCONS_00005864-exon-sc0000061-1510915933:800023..800268 | Clytia hemisphaerica | exon |
| TCONS_00005864-exon-sc0000061-1575043694:800023..800268 | TCONS_00005864-exon-sc0000061-1575043694:800023..800268 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:797441..800268 + |
Blast
The following BLAST results are available for this feature:
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