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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005850 ID=TCONS_00005850|Name=TCONS_00005850|organism=Clytia hemisphaerica|type=transcript|length=589bp
GTGAACGTTCGAATATTCGACATGATAAATTTTATCTAGCAAGTGTTAAG
AATTTGCTTCTATCTCCATGGAGCTGAAGAATCAAAAAGTAAGAATTTTA
GAATTCGCACATATAAATAGAGGTTTTCATTGTTGGACATCCAAATTACT
GATTATCTTTTGCCTAGtatttgaggACTCGATTCGATTCGATTGGTTTT
CCAAGATGTTTCGTCTCAATTTGATTGTCGTAATTGTCATTTTTGGAGTC
ATTCTCGGTCAGAGTGAAGGAACTTGCATTAAAGGACACGATTTACACGT
TGAAACAGGTCAACACATCAGTCATAAGAATGTCATGTGCTGGGTATGCA
AAGACAATGGTGACCTTGACGTACTCCCTTTCAAAGATTGTGAGAATGAC
CCTAACACTGTTGAATGGGTCTTCTAAGTCTTTGCTCTTTGTTATTATTT
ACCATTAAGTCTTATATTTACTTCGATATTATTTTTCCACCAAATGATAA
AGATCTCTTATCAATTTTGTAATTAAATGCGATATTTATATGTAAACAag
tattattttgaataaacacGTAATGTTATTCTCGGGATT Run BLAST on NCBI protein sequence of TCONS_00005850-protein >TCONS_00005850-protein ID=TCONS_00005850-protein|Name=TCONS_00005850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MELKNQKVRILEFAHINRGFHCWTSKLLIIFCLVFEDSIRFDWFSKMFRL
NLIVVIVIFGVILGQSEGTCIKGHDLHVETGQHISHKNVMCWVCKDNGDL
DVLPFKDCENDPNTVEWVF Run BLAST on NCBI transcript from alignment at sc0000061:460318..461594+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005850 ID=TCONS_00005850|Name=TCONS_00005850|organism=Clytia hemisphaerica|type=transcript|length=1277bp|location=Sequence derived from alignment at sc0000061:460318..461594+ (Clytia hemisphaerica)
GTGAACGTTCGAATATTCGACATGATAAATTTTATCTAGCAAGTGTTAAG
AATTTGCTTCTATCTCCATGGAGCTGAAGAATCAAAAAGTAAGAATTTTA
GAATTCGCACATATAAATAGAGGTTTTCATTGTTGGACATCCAAATTACT
GATTATCTTTTGCCTAGGTAAGTACCCTACTCAATCATGCtgcaaaatct
tttataaagACCAATGGATTTTAGCTTTTCTGAACATTTTCAGTTTATTA
TTTTGCTGTTTGTTGCATTTTTGTGATTAACTCAAAGGTTTCAAACTAAT
ATTATccattttgtgaaaattctgtaaatttttttctagaaattaaCCCT
GTGCAAATAATATTTCGGTTGGTTGAAAAATCTCCCTGTAAACTAAGACT
GTagatattgaaaattgattttagtatttgaggACTCGATTCGATTCGAT
TGGTTTTCCAAGATGTTTCGTCTCAATTTGATTGTCGTAATTGTCATTTT
TGGAGTCATTCTCGGTCAGAGTGAAGGAACTTGCATTAAAGGTGAGTGTA
ATAAGAATAAtgactttataagaacatgcgtttgaaatttgatcaaaaca
tACATAAGAACAAATTTAGAACAATCCAGGCCTTTCAgaaatcacgcaat
ttttttcaagCACAGCCCAGCCCGGCCCAAATTTTCCGATATTTCCTTTT
TTAGCAGCTCTAAAGGAATCAAAACGGGCATATTCAGTGTTTCCACGATT
TCATGTCAGGCACAACGGTGTGTACTAACTTTTTCTTGGTAGAGATAAAG
TGAGCACAAAGTTATCCCGTAACTTGTCCCTGAGAAAGATCCCAAGAAAA
TGATAGAAATCACTAGAAAAAGACTCACACAGGAAAGGAAAAAGTCCACG
ATGGCATACATGTTTGTGGTGTACTAGGGTATGGAATTCCATGTGTATTC
TTTATTCTGTATTATATTTCAGGACACGATTTACACGTTGAAACAGGTCA
ACACATCAGTCATAAGAATGTCATGTGCTGGGTATGCAAAGACAATGGTG
ACCTTGACGTACTCCCTTTCAAAGATTGTGAGAATGACCCTAACACTGTT
GAATGGGTCTTCTAAGTCTTTGCTCTTTGTTATTATTTACCATTAAGTCT
TATATTTACTTCGATATTATTTTTCCACCAAATGATAAAGATCTCTTATC
AATTTTGTAATTAAATGCGATATTTATATGTAAACAagtattattttgaa
taaacacGTAATGTTATTCTCGGGATT Coding sequence (CDS) from alignment at sc0000061:460318..461594+ >TCONS_00005850 ID=TCONS_00005850|Name=TCONS_00005850|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at sc0000061:460318..461594+ (Clytia hemisphaerica)
ATGGAGCTGAAGAATCAAAAAGTAAGAATTTTAGAATTCGCACATATAAA
TAGAGGTTTTCATTGTTGGACATCCAAATTACTGATTATCTTTTGCCTAG
tatttgaggACTCGATTCGATTCGATTGGTTTTCCAAGATGTTTCGTCTC
AATTTGATTGTCGTAATTGTCATTTTTGGAGTCATTCTCGGTCAGAGTGA
AGGAACTTGCATTAAAGGACACGATTTACACGTTGAAACAGGTCAACACA
TCAGTCATAAGAATGTCATGTGCTGGGTATGCAAAGACAATGGTGACCTT
GACGTACTCCCTTTCAAAGATTGTGAGAATGACCCTAACACTGTTGAATG
GGTCTTCTAAATGGAGCTGAAGAATCAAAAAGTAAGAATTTTAGAATTCG
CACATATAAATAGAGGTTTTCATTGTTGGACATCCAAATTACTGATTATC
TTTTGCCTAGtatttgaggACTCGATTCGATTCGATTGGTTTTCCAAGAT
GTTTCGTCTCAATTTGATTGTCGTAATTGTCATTTTTGGAGTCATTCTCG
GTCAGAGTGAAGGAACTTGCATTAAAGGACACGATTTACACGTTGAAACA
GGTCAACACATCAGTCATAAGAATGTCATGTGCTGGGTATGCAAAGACAA
TGGTGACCTTGACGTACTCCCTTTCAAAGATTGTGAGAATGACCCTAACA
CTGTTGAATGGGTCTTCTAAATGGAGCTGAAGAATCAAAAAGTAAGAATT
TTAGAATTCGCACATATAAATAGAGGTTTTCATTGTTGGACATCCAAATT
ACTGATTATCTTTTGCCTAGtatttgaggACTCGATTCGATTCGATTGGT
TTTCCAAGATGTTTCGTCTCAATTTGATTGTCGTAATTGTCATTTTTGGA
GTCATTCTCGGTCAGAGTGAAGGAACTTGCATTAAAGGACACGATTTACA
CGTTGAAACAGGTCAACACATCAGTCATAAGAATGTCATGTGCTGGGTAT
GCAAAGACAATGGTGACCTTGACGTACTCCCTTTCAAAGATTGTGAGAAT
GACCCTAACACTGTTGAATGGGTCTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005850-exon-sc0000061-1491911889:460318..460484 | TCONS_00005850-exon-sc0000061-1491911889:460318..460484 | Clytia hemisphaerica | exon |
| TCONS_00005850-exon-sc0000061-1510915933:460318..460484 | TCONS_00005850-exon-sc0000061-1510915933:460318..460484 | Clytia hemisphaerica | exon |
| TCONS_00005850-exon-sc0000061-1575043694:460318..460484 | TCONS_00005850-exon-sc0000061-1575043694:460318..460484 | Clytia hemisphaerica | exon |
| TCONS_00005850-exon-sc0000061-1491911889:460742..460858 | TCONS_00005850-exon-sc0000061-1491911889:460742..460858 | Clytia hemisphaerica | exon |
| TCONS_00005850-exon-sc0000061-1510915933:460742..460858 | TCONS_00005850-exon-sc0000061-1510915933:460742..460858 | Clytia hemisphaerica | exon |
| TCONS_00005850-exon-sc0000061-1575043694:460742..460858 | TCONS_00005850-exon-sc0000061-1575043694:460742..460858 | Clytia hemisphaerica | exon |
| TCONS_00005850-exon-sc0000061-1491911889:461290..461594 | TCONS_00005850-exon-sc0000061-1491911889:461290..461594 | Clytia hemisphaerica | exon |
| TCONS_00005850-exon-sc0000061-1510915933:461290..461594 | TCONS_00005850-exon-sc0000061-1510915933:461290..461594 | Clytia hemisphaerica | exon |
| TCONS_00005850-exon-sc0000061-1575043694:461290..461594 | TCONS_00005850-exon-sc0000061-1575043694:461290..461594 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:460318..461594 + |
Blast
The following BLAST results are available for this feature:
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