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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005848 ID=TCONS_00005848|Name=TCONS_00005848|organism=Clytia hemisphaerica|type=transcript|length=1658bp
GAAATATTCTTTACTTATAATATTTTTCGCTTTTTGTTTTGTCCTTATAA
TAACTATAAAACAGTGAAATATCGAGATTTACTTACTGGGGAAGAGTTCA
ATGTACGAAGCAGACTTTACACTGACCTAGACAAAATGAGATCAATTCAT
ATCATTTTGGTGGTTGCTTGCTATATTGTATTCGAAGTGCATGCGAAATG
TCAATTCAGAGGTACCGAGCTATCCGAAAATGAATTAGCTGAATTCGCTG
ATGCATGCGTTGTGTGTTATCATGGCGCCAAATACATTGGTCCAGCACGA
CTCTGTGAAGGAAACAATAAAAGATCCATTCGTCCGCGGAGAAAAAGTCG
TTTCGGCAACCGTAGATTTGGTCGTGAAGCAGATGATTTAGTTAATGACG
TCATCGCATTTGCTGAAAGCGAATTGGAAACAAGGTCCGTTGGCCCGACA
AGTAAGTTGCATTATGGTAGCGGTAGATTTGGGCGTGAGTCAGATGAAAA
CGAGGTGGAAACCAGGTCTGTTCGTCCAAGAAGAAAGAGCCGTTTCGGTA
ACCGTAGATTTGGACGCAGCGCTGATGATCAATTGGACGAAACTGAGTAC
GACATGGAATCCAGGTCTGTTCGTCCAAGAAGAAAAAGCCGTTTCGGTAA
CCGTAGATTTGGACGTGAGGTGGACTCTAATGAAGTTGAAGAATCTTATG
AAGAAGAAGCCAGAGAAACACGCCCTCGAAGAAGGGGGCGTTTTGGAAGT
CGAAGATTTGGGCGTTCTATGATGTTTGACGATtcgattgaaaatgaaga
agctgCCCGGTCAATTGGTCCTCGAAGACGTTTCGGGCGCCGCAGATTGG
GACGTGACGCTGAAGAAGATGACGCTCGTTCTATCCGCCCACGACGTAAG
GGTCGAAGCCGCAATAGATTTGGCAGAGAAATGGAAGAATCTGAATTAGA
AGCAAGATCTATCAGACCGAGAAGGAAGAGCCGTTTTGGAAACCGCCGTT
TTGGACGCGAAGCTGATGAGGAAagcaaaaatgaagaagaagctAGGTCA
GTCCGCCCAAGACGTAAAGGGCGTAGTCGAAACCGATTTGGGCGTGACGC
GTTGGTGAATTTGGTTCAAGATAACACTGATGGATATGTCGTGTATTACT
AAGAGAAATTAATCACTTTTGAAGAGACAAATTGACTTTACTCTCAACTC
AGAGCTTATAACAGACACTCTAAATTGTTAACGGATTTATTGCTTCGGGT
AAGAAGTTAACCAATTACATTCAGAGACCAAGGAATCAGGAAAACATAGG
ATTTTGGacaaagatgaaaatgatttcggGCTTTTGAGATCCTAGACTTT
ACGACTCGAATATCATTATCCAAGCGCTTTTCAGATTTGtgttaatattt
caaatttatttcaaacaaatttgttaTAAAGAATATTTCGTCTTTATGTT
CTGTTGCGAATTAGCttcttggcaaaattatttAGCGACTTCACACTTCG
AGGTTAAaagattgtttaaaatgaaGGGGATAAACTCCCACTTTTCTAAC
ACGTTTGACTATTAGATTGTATATATCAGAAAACTAGCGGAAATAAAGTT
TGTTTTAAAATCACTAATCTGATAATTGGgattaaaaaggaaaaatcttT
CATTGGTT Run BLAST on NCBI protein sequence of TCONS_00005848-protein >TCONS_00005848-protein ID=TCONS_00005848-protein|Name=TCONS_00005848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
EIFFTYNIFRFLFCPYNNYKTVKYRDLLTGEEFNVRSRLYTDLDKMRSIH
IILVVACYIVFEVHAKCQFRGTELSENELAEFADACVVCYHGAKYIGPAR
LCEGNNKRSIRPRRKSRFGNRRFGREADDLVNDVIAFAESELETRSVGPT
SKLHYGSGRFGRESDENEVETRSVRPRRKSRFGNRRFGRSADDQLDETEY
DMESRSVRPRRKSRFGNRRFGREVDSNEVEESYEEEARETRPRRRGRFGS
RRFGRSMMFDDSIENEEAARSIGPRRRFGRRRLGRDAEEDDARSIRPRRK
GRSRNRFGREMEESELEARSIRPRRKSRFGNRRFGREADEESKNEEEARS
VRPRRKGRSRNRFGRDALVNLVQDNTDGYVVYY Run BLAST on NCBI transcript from alignment at sc0000061:455071..457931+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005848 ID=TCONS_00005848|Name=TCONS_00005848|organism=Clytia hemisphaerica|type=transcript|length=2861bp|location=Sequence derived from alignment at sc0000061:455071..457931+ (Clytia hemisphaerica)
GAAATATTCTTTACTTATAATATTTTTCGCTTTTTGTTTTGTCCTTATAA
TAACTATAAAACAGTGAAATATCGAGATTTACTTACTGGGGAAGAGTTCA
ATGTACGAAGCAGACTTTACACTGACCTAGGTGAGATgtcgttttttttc
aaaagtacacAGGAATTTGTATTGGTAGCCTTTTGGTATTTGGATTTATA
ACGCTTTTTTAACGCAAGGCCGgtgtccactttcgcgcgaaatgggtgac
agttattttcttaactttttttgcctgaagaaaagatcacgccataaaaa
agttttgcgtgaacaaaaaaaattgaacttttttcatccgtcACGTCAAT
tgtgaccaatggaattgcttcattttttaaCCGACCAataaccttacaaa
aacgtcaaaaagtctTCGCTCATGTCGTGCGGAAGTGGAGCCCGCCCTTT
AAGATTATTATTTCGGTGTCCTCTGAAAGATTTTCAAGTCTTGATTCGAA
AATTAACTCTCCTGACTATTTTAACGATTTGTTCGACTGCGAGAATTAGT
CTCGGTGCAGATTACTTTctatatacagttgacgctctctaattcgatct
ctAAGGGAAATCGGACTTTCATCGAATAAAGGAGCTTATGGAATAAGGGA
GCATCGTTTAtgaaagtttcttgttgacggggaatttcaatttcatcgaa
taagggagcctatagAAAAGtaaaacgtcgaattagagagcatcaactgt
aacACTATACTTTTAATTATCTTCTGTTACAGACAAAATGAGATCAATTC
ATATCATTTTGGTGGTTGCTTGCTATATTGTATTCGAAGTGCATGCGAAA
TGTCAATTCAGAGGTACGTGGACTCAtgaggctggacttaaaaaaaatat
ttgtttgccGTCAGCCGACCGACTCTTCTCTAAACTTGCCGACCTAAAAA
CTTTTATTGCTATTTCGAAGagatctttttttcttcaaaaattacaaaat
gtagaccaaatgaccaaaataaaaaaaaattccaaaaataacctccaaaa
tctagggtcgggtgacggcaaaccatgAATTATTTAAGTCCAGCATGATC
ATCTGGAAAGGTTTACGGATTGATTACTCTATTCTCGAGTTAAGTATCAT
TAGATGAATCACGACGACAGAATTTCGGCCTGGTTTTTGTTGCCATGGCC
ACAAGAAATTCGACCGTTGCCGAGATTTAACTATGGATACTTAACTTCGC
TAATAAGCGCTCCTCTTTAATTATTTGTTCGTAATCTTCCCCCCATCCGA
GACATTCCACTAATTAATTTTAGGaatttattatttcaaaaatgatgcTT
TTGTCTTAATCATAAGCCTccttttaaactgaaaatgaGTTTGCTGATCC
GATATCTTTTATAGGTACCGAGCTATCCGAAAATGAATTAGCTGAATTCG
CTGATGCATGCGTTGTGTGTTATCATGGCGCCAAATACATTGGTCCAGCA
CGACTCTGTGAAGGAAACAATAAAAGATCCATTCGTCCGCGGAGAAAAAG
TCGTTTCGGCAACCGTAGATTTGGTCGTGAAGCAGATGATTTAGTTAATG
ACGTCATCGCATTTGCTGAAAGCGAATTGGAAACAAGGTCCGTTGGCCCG
ACAAGTAAGTTGCATTATGGTAGCGGTAGATTTGGGCGTGAGTCAGATGA
AAACGAGGTGGAAACCAGGTCTGTTCGTCCAAGAAGAAAGAGCCGTTTCG
GTAACCGTAGATTTGGACGCAGCGCTGATGATCAATTGGACGAAACTGAG
TACGACATGGAATCCAGGTCTGTTCGTCCAAGAAGAAAAAGCCGTTTCGG
TAACCGTAGATTTGGACGTGAGGTGGACTCTAATGAAGTTGAAGAATCTT
ATGAAGAAGAAGCCAGAGAAACACGCCCTCGAAGAAGGGGGCGTTTTGGA
AGTCGAAGATTTGGGCGTTCTATGATGTTTGACGATtcgattgaaaatga
agaagctgCCCGGTCAATTGGTCCTCGAAGACGTTTCGGGCGCCGCAGAT
TGGGACGTGACGCTGAAGAAGATGACGCTCGTTCTATCCGCCCACGACGT
AAGGGTCGAAGCCGCAATAGATTTGGCAGAGAAATGGAAGAATCTGAATT
AGAAGCAAGATCTATCAGACCGAGAAGGAAGAGCCGTTTTGGAAACCGCC
GTTTTGGACGCGAAGCTGATGAGGAAagcaaaaatgaagaagaagctAGG
TCAGTCCGCCCAAGACGTAAAGGGCGTAGTCGAAACCGATTTGGGCGTGA
CGCGTTGGTGAATTTGGTTCAAGATAACACTGATGGATATGTCGTGTATT
ACTAAGAGAAATTAATCACTTTTGAAGAGACAAATTGACTTTACTCTCAA
CTCAGAGCTTATAACAGACACTCTAAATTGTTAACGGATTTATTGCTTCG
GGTAAGAAGTTAACCAATTACATTCAGAGACCAAGGAATCAGGAAAACAT
AGGATTTTGGacaaagatgaaaatgatttcggGCTTTTGAGATCCTAGAC
TTTACGACTCGAATATCATTATCCAAGCGCTTTTCAGATTTGtgttaata
tttcaaatttatttcaaacaaatttgttaTAAAGAATATTTCGTCTTTAT
GTTCTGTTGCGAATTAGCttcttggcaaaattatttAGCGACTTCACACT
TCGAGGTTAAaagattgtttaaaatgaaGGGGATAAACTCCCACTTTTCT
AACACGTTTGACTATTAGATTGTATATATCAGAAAACTAGCGGAAATAAA
GTTTGTTTTAAAATCACTAATCTGATAATTGGgattaaaaaggaaaaatc
ttTCATTGGTT Coding sequence (CDS) from alignment at sc0000061:455071..457931+ >TCONS_00005848 ID=TCONS_00005848|Name=TCONS_00005848|organism=Clytia hemisphaerica|type=CDS|length=3456bp|location=Sequence derived from alignment at sc0000061:455071..457931+ (Clytia hemisphaerica)
GAAATATTCTTTACTTATAATATTTTTCGCTTTTTGTTTTGTCCTTATAA
TAACTATAAAACAGTGAAATATCGAGATTTACTTACTGGGGAAGAGTTCA
ATGTACGAAGCAGACTTTACACTGACCTAGACAAAATGAGATCAATTCAT
ATCATTTTGGTGGTTGCTTGCTATATTGTATTCGAAGTGCATGCGAAATG
TCAATTCAGAGGTACCGAGCTATCCGAAAATGAATTAGCTGAATTCGCTG
ATGCATGCGTTGTGTGTTATCATGGCGCCAAATACATTGGTCCAGCACGA
CTCTGTGAAGGAAACAATAAAAGATCCATTCGTCCGCGGAGAAAAAGTCG
TTTCGGCAACCGTAGATTTGGTCGTGAAGCAGATGATTTAGTTAATGACG
TCATCGCATTTGCTGAAAGCGAATTGGAAACAAGGTCCGTTGGCCCGACA
AGTAAGTTGCATTATGGTAGCGGTAGATTTGGGCGTGAGTCAGATGAAAA
CGAGGTGGAAACCAGGTCTGTTCGTCCAAGAAGAAAGAGCCGTTTCGGTA
ACCGTAGATTTGGACGCAGCGCTGATGATCAATTGGACGAAACTGAGTAC
GACATGGAATCCAGGTCTGTTCGTCCAAGAAGAAAAAGCCGTTTCGGTAA
CCGTAGATTTGGACGTGAGGTGGACTCTAATGAAGTTGAAGAATCTTATG
AAGAAGAAGCCAGAGAAACACGCCCTCGAAGAAGGGGGCGTTTTGGAAGT
CGAAGATTTGGGCGTTCTATGATGTTTGACGATtcgattgaaaatgaaga
agctgCCCGGTCAATTGGTCCTCGAAGACGTTTCGGGCGCCGCAGATTGG
GACGTGACGCTGAAGAAGATGACGCTCGTTCTATCCGCCCACGACGTAAG
GGTCGAAGCCGCAATAGATTTGGCAGAGAAATGGAAGAATCTGAATTAGA
AGCAAGATCTATCAGACCGAGAAGGAAGAGCCGTTTTGGAAACCGCCGTT
TTGGACGCGAAGCTGATGAGGAAagcaaaaatgaagaagaagctAGGTCA
GTCCGCCCAAGACGTAAAGGGCGTAGTCGAAACCGATTTGGGCGTGACGC
GTTGGTGAATTTGGTTCAAGATAACACTGATGGATATGTCGTGTATTACT
AAGAAATATTCTTTACTTATAATATTTTTCGCTTTTTGTTTTGTCCTTAT
AATAACTATAAAACAGTGAAATATCGAGATTTACTTACTGGGGAAGAGTT
CAATGTACGAAGCAGACTTTACACTGACCTAGACAAAATGAGATCAATTC
ATATCATTTTGGTGGTTGCTTGCTATATTGTATTCGAAGTGCATGCGAAA
TGTCAATTCAGAGGTACCGAGCTATCCGAAAATGAATTAGCTGAATTCGC
TGATGCATGCGTTGTGTGTTATCATGGCGCCAAATACATTGGTCCAGCAC
GACTCTGTGAAGGAAACAATAAAAGATCCATTCGTCCGCGGAGAAAAAGT
CGTTTCGGCAACCGTAGATTTGGTCGTGAAGCAGATGATTTAGTTAATGA
CGTCATCGCATTTGCTGAAAGCGAATTGGAAACAAGGTCCGTTGGCCCGA
CAAGTAAGTTGCATTATGGTAGCGGTAGATTTGGGCGTGAGTCAGATGAA
AACGAGGTGGAAACCAGGTCTGTTCGTCCAAGAAGAAAGAGCCGTTTCGG
TAACCGTAGATTTGGACGCAGCGCTGATGATCAATTGGACGAAACTGAGT
ACGACATGGAATCCAGGTCTGTTCGTCCAAGAAGAAAAAGCCGTTTCGGT
AACCGTAGATTTGGACGTGAGGTGGACTCTAATGAAGTTGAAGAATCTTA
TGAAGAAGAAGCCAGAGAAACACGCCCTCGAAGAAGGGGGCGTTTTGGAA
GTCGAAGATTTGGGCGTTCTATGATGTTTGACGATtcgattgaaaatgaa
gaagctgCCCGGTCAATTGGTCCTCGAAGACGTTTCGGGCGCCGCAGATT
GGGACGTGACGCTGAAGAAGATGACGCTCGTTCTATCCGCCCACGACGTA
AGGGTCGAAGCCGCAATAGATTTGGCAGAGAAATGGAAGAATCTGAATTA
GAAGCAAGATCTATCAGACCGAGAAGGAAGAGCCGTTTTGGAAACCGCCG
TTTTGGACGCGAAGCTGATGAGGAAagcaaaaatgaagaagaagctAGGT
CAGTCCGCCCAAGACGTAAAGGGCGTAGTCGAAACCGATTTGGGCGTGAC
GCGTTGGTGAATTTGGTTCAAGATAACACTGATGGATATGTCGTGTATTA
CTAAGAAATATTCTTTACTTATAATATTTTTCGCTTTTTGTTTTGTCCTT
ATAATAACTATAAAACAGTGAAATATCGAGATTTACTTACTGGGGAAGAG
TTCAATGTACGAAGCAGACTTTACACTGACCTAGACAAAATGAGATCAAT
TCATATCATTTTGGTGGTTGCTTGCTATATTGTATTCGAAGTGCATGCGA
AATGTCAATTCAGAGGTACCGAGCTATCCGAAAATGAATTAGCTGAATTC
GCTGATGCATGCGTTGTGTGTTATCATGGCGCCAAATACATTGGTCCAGC
ACGACTCTGTGAAGGAAACAATAAAAGATCCATTCGTCCGCGGAGAAAAA
GTCGTTTCGGCAACCGTAGATTTGGTCGTGAAGCAGATGATTTAGTTAAT
GACGTCATCGCATTTGCTGAAAGCGAATTGGAAACAAGGTCCGTTGGCCC
GACAAGTAAGTTGCATTATGGTAGCGGTAGATTTGGGCGTGAGTCAGATG
AAAACGAGGTGGAAACCAGGTCTGTTCGTCCAAGAAGAAAGAGCCGTTTC
GGTAACCGTAGATTTGGACGCAGCGCTGATGATCAATTGGACGAAACTGA
GTACGACATGGAATCCAGGTCTGTTCGTCCAAGAAGAAAAAGCCGTTTCG
GTAACCGTAGATTTGGACGTGAGGTGGACTCTAATGAAGTTGAAGAATCT
TATGAAGAAGAAGCCAGAGAAACACGCCCTCGAAGAAGGGGGCGTTTTGG
AAGTCGAAGATTTGGGCGTTCTATGATGTTTGACGATtcgattgaaaatg
aagaagctgCCCGGTCAATTGGTCCTCGAAGACGTTTCGGGCGCCGCAGA
TTGGGACGTGACGCTGAAGAAGATGACGCTCGTTCTATCCGCCCACGACG
TAAGGGTCGAAGCCGCAATAGATTTGGCAGAGAAATGGAAGAATCTGAAT
TAGAAGCAAGATCTATCAGACCGAGAAGGAAGAGCCGTTTTGGAAACCGC
CGTTTTGGACGCGAAGCTGATGAGGAAagcaaaaatgaagaagaagctAG
GTCAGTCCGCCCAAGACGTAAAGGGCGTAGTCGAAACCGATTTGGGCGTG
ACGCGTTGGTGAATTTGGTTCAAGATAACACTGATGGATATGTCGTGTAT
TACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005848-exon-sc0000061-1491911889:455071..455200 | TCONS_00005848-exon-sc0000061-1491911889:455071..455200 | Clytia hemisphaerica | exon |
| TCONS_00005848-exon-sc0000061-1510915933:455071..455200 | TCONS_00005848-exon-sc0000061-1510915933:455071..455200 | Clytia hemisphaerica | exon |
| TCONS_00005848-exon-sc0000061-1575043694:455071..455200 | TCONS_00005848-exon-sc0000061-1575043694:455071..455200 | Clytia hemisphaerica | exon |
| TCONS_00005848-exon-sc0000061-1491911889:455853..455933 | TCONS_00005848-exon-sc0000061-1491911889:455853..455933 | Clytia hemisphaerica | exon |
| TCONS_00005848-exon-sc0000061-1510915933:455853..455933 | TCONS_00005848-exon-sc0000061-1510915933:455853..455933 | Clytia hemisphaerica | exon |
| TCONS_00005848-exon-sc0000061-1575043694:455853..455933 | TCONS_00005848-exon-sc0000061-1575043694:455853..455933 | Clytia hemisphaerica | exon |
| TCONS_00005848-exon-sc0000061-1491911889:456485..457931 | TCONS_00005848-exon-sc0000061-1491911889:456485..457931 | Clytia hemisphaerica | exon |
| TCONS_00005848-exon-sc0000061-1510915933:456485..457931 | TCONS_00005848-exon-sc0000061-1510915933:456485..457931 | Clytia hemisphaerica | exon |
| TCONS_00005848-exon-sc0000061-1575043694:456485..457931 | TCONS_00005848-exon-sc0000061-1575043694:456485..457931 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:455071..457931 + |
Blast
The following BLAST results are available for this feature:
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