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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005845 ID=TCONS_00005845|Name=TCONS_00005845|organism=Clytia hemisphaerica|type=transcript|length=1172bp
ATTTGTTATTAAACTTTGTTTTAAAGAGCAGGATAAGAGAAATCTCTTCG
CTTATTTGCAAACGATGAAGCAGGGATGGTAACAGTGCGGAACTTGAACT
TCTTGTACTCTTGAAGAGCtatgaaagttttcaaaaattgccgttttaga
tctcttaatttttgtttttagttcTAAAACAACGTGGACAGGACAAAATT
TTACATTTAACATATCCAAAGACTGATTAATAAACTTTGGTTCTTTCTCT
CAAGGAAGGAATTATAAATCATATGAAATAGGGAATTTTCAATATTAGAG
AAGAATGGATTCGAGTGGATTATCGTCATCAGAGAAAACGTGTCTTGAAA
ACTGGtaccgaaaacgaaagtataatTTCATTATATTGGTCATTTTAGAA
GGATTGTTTTCATTCGAATATTCAGCTATCAGTATTTCagctttatatta
ttttcaagaCATATTAAAAGTTTCCAATCCTAAATTATATTATTCATTAT
CAATGGCTGCTTTACAATTTGCATCAATGATTTCATCCACTTTGATTGGA
AAGCTTGTTGATCGGTACCGTAACTTACGAATCGTTGTCTTGTACATCTC
AAATTTTAACGTGATTGGTAATTTGCTGTATATTTTCCCATATTTGAACT
GGTTCCCGATACTAGGACGACTTCTTTGTGGAATTGCTGACGGGACAAGA
CCTGCCTATCAAGGAGAAATCACCAGGACATACCCAATCGAAGAACTAAC
CAACTTAAACACAAAAATCTACACGTTCGCTATTGTCTGTCACGCTATCG
CACCTGTATCCCCCATAGTGTTTCGATGGatcaattttaatttgtttGGA
TTCGAATTTAACCAATACAATTTTTGTAGTGttgttttaattgttttgaC
CATCATGTATCAATTAATTGCTTATTTTCTTTTAACTGATATGACCAGAG
ATCGAGGATATCAGATTTTCCTCAGGATTTATAATAAAACAGATGACAGT
GCGATCGTTCTACAGCTTGCAGAAACTGAAACTGAGCAAAGTAACCAGAA
TAATCTCCAAAGTTCTCATGATCATGAAACTCATGAAAAGTTGAACAGAA
ACCAAAAATCATTACATCTGAATGATGATAGCGAATTTGTGCTCAATGCT
CTGGAAAGTGACCAGTCATCAG Run BLAST on NCBI protein sequence of TCONS_00005845-protein >TCONS_00005845-protein ID=TCONS_00005845-protein|Name=TCONS_00005845-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
MDSSGLSSSEKTCLENWYRKRKYNFIILVILEGLFSFEYSAISISALYYF
QDILKVSNPKLYYSLSMAALQFASMISSTLIGKLVDRYRNLRIVVLYISN
FNVIGNLLYIFPYLNWFPILGRLLCGIADGTRPAYQGEITRTYPIEELTN
LNTKIYTFAIVCHAIAPVSPIVFRWINFNLFGFEFNQYNFCSVVLIVLTI
MYQLIAYFLLTDMTRDRGYQIFLRIYNKTDDSAIVLQLAETETEQSNQNN
LQSSHDHETHEKLNRNQKSLHLNDDSEFVLNALESDQSS Run BLAST on NCBI transcript from alignment at sc0000061:403012..404668+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005845 ID=TCONS_00005845|Name=TCONS_00005845|organism=Clytia hemisphaerica|type=transcript|length=1657bp|location=Sequence derived from alignment at sc0000061:403012..404668+ (Clytia hemisphaerica)
ATTTGTTATTAAACTTTGTTTTAAAGAGCAGGATAAGAGAAATCTCTTCG
CTTATTTGCAAACGATGAAGCAGGGATGGTAACAGTGCGGAACTTGAACT
TCTTGTACTCTTGAAGAGCtatgaaagttttcaaaaattgccgttttaga
tctcttaatttttgtttttagttcTAAAACAACGTGGACAGGACAAAATT
TTACATTTAACATATCCAAAGACTGATTAATAAACTTTGGTTCTTTCTCT
CAAGGAAGGAATTATAAATCATATGAAATAGGGAATTTTCAATATTAGAG
AAGAATGGATTCGAGTGGATTATCGTCATCAGAGAAAACGTGTCTTGAAA
ACTGGtaccgaaaacgaaagtataatTTCATTATATTGGTCATTTTAGAA
GGATTGTTTTCATTCGAATATTCAGCTATCAGTATTTCagctttatatta
ttttcaagaCATATTAAAAGTTTCCAATCCTAAATTATATTATTCATTAT
CAATGGCTGCTTTACAATTTGCATCAATGATTTCATCCACTTTGATTGGA
AAGCTTGTTGATCGGTACCGTAACTTACGAATCGTTGTCTTGTACATCTC
AAATTTTAACGTGATTGGTAATTTGCTGTATATTTTCCCATATTTGAACT
GGTTCCCGATACTAGGACGACTTCTTTGTGGAATTGCTGACGGGACAAGA
CCTGCCTATCAAGGTTGGTAATATTTCTATCGTATATTCTCAAAATTACC
CTTTCGAGACCAGAAAAAATACTATAGATGTTATACTTGAATTAAAAGAA
GGAGTGTGATGTTCCTACGAATGTGGGTTACCCTGGAAAACAGGAGTATT
ATCAAATATaggtttgaaaattgtttgggaAATTTCCAGGCTTCTGCTCA
TTTTCTAGCGAAAGATTTCTTAAatgaagtatatctatagaggccTGAAA
TCAAGACTAGGAATTTGCTTTAAGTCTGTTCGTTCTTGATATACTCTTTT
AAAATAATGTTTTCGATTttgtaacaaaatattttgctagCAGATGAATT
AGGAGCTTAGAAGATGTTCTTCTAAAGCATCGAAAAAGCGAGGAAAAATA
CTCGAGACGCACGATGGAAAAGGCTTCCTCTCCAGGATTCCTGGAAATTC
CTTACTTAACAATTAACCAATCAGAatcatttttatttacttaTGCAGGA
GAAATCACCAGGACATACCCAATCGAAGAACTAACCAACTTAAACACAAA
AATCTACACGTTCGCTATTGTCTGTCACGCTATCGCACCTGTATCCCCCA
TAGTGTTTCGATGGatcaattttaatttgtttGGATTCGAATTTAACCAA
TACAATTTTTGTAGTGttgttttaattgttttgaCCATCATGTATCAATT
AATTGCTTATTTTCTTTTAACTGATATGACCAGAGATCGAGGATATCAGA
TTTTCCTCAGGATTTATAATAAAACAGATGACAGTGCGATCGTTCTACAG
CTTGCAGAAACTGAAACTGAGCAAAGTAACCAGAATAATCTCCAAAGTTC
TCATGATCATGAAACTCATGAAAAGTTGAACAGAAACCAAAAATCATTAC
ATCTGAATGATGATAGCGAATTTGTGCTCAATGCTCTGGAAAGTGACCAG
TCATCAG Coding sequence (CDS) from alignment at sc0000061:403012..404668+ >TCONS_00005845 ID=TCONS_00005845|Name=TCONS_00005845|organism=Clytia hemisphaerica|type=CDS|length=1734bp|location=Sequence derived from alignment at sc0000061:403012..404668+ (Clytia hemisphaerica)
ATGGATTCGAGTGGATTATCGTCATCAGAGAAAACGTGTCTTGAAAACTG
GtaccgaaaacgaaagtataatTTCATTATATTGGTCATTTTAGAAGGAT
TGTTTTCATTCGAATATTCAGCTATCAGTATTTCagctttatattatttt
caagaCATATTAAAAGTTTCCAATCCTAAATTATATTATTCATTATCAAT
GGCTGCTTTACAATTTGCATCAATGATTTCATCCACTTTGATTGGAAAGC
TTGTTGATCGGTACCGTAACTTACGAATCGTTGTCTTGTACATCTCAAAT
TTTAACGTGATTGGTAATTTGCTGTATATTTTCCCATATTTGAACTGGTT
CCCGATACTAGGACGACTTCTTTGTGGAATTGCTGACGGGACAAGACCTG
CCTATCAAGGAGAAATCACCAGGACATACCCAATCGAAGAACTAACCAAC
TTAAACACAAAAATCTACACGTTCGCTATTGTCTGTCACGCTATCGCACC
TGTATCCCCCATAGTGTTTCGATGGatcaattttaatttgtttGGATTCG
AATTTAACCAATACAATTTTTGTAGTGttgttttaattgttttgaCCATC
ATGTATCAATTAATTGCTTATTTTCTTTTAACTGATATGACCAGAGATCG
AGGATATCAGATTTTCCTCAGGATTTATAATAAAACAGATGACAGTGCGA
TCGTTCTACAGCTTGCAGAAACTGAAACTGAGCAAAGTAACCAGAATAAT
CTCCAAAGTTCTCATGATCATGAAACTCATGAAAAGTTGAACAGAAACCA
AAAATCATTACATCTGAATGATGATAGCGAATTTGTGCTCAATGCTCTGG
AAAGTGACCAGTCATCAATGGATTCGAGTGGATTATCGTCATCAGAGAAA
ACGTGTCTTGAAAACTGGtaccgaaaacgaaagtataatTTCATTATATT
GGTCATTTTAGAAGGATTGTTTTCATTCGAATATTCAGCTATCAGTATTT
CagctttatattattttcaagaCATATTAAAAGTTTCCAATCCTAAATTA
TATTATTCATTATCAATGGCTGCTTTACAATTTGCATCAATGATTTCATC
CACTTTGATTGGAAAGCTTGTTGATCGGTACCGTAACTTACGAATCGTTG
TCTTGTACATCTCAAATTTTAACGTGATTGGTAATTTGCTGTATATTTTC
CCATATTTGAACTGGTTCCCGATACTAGGACGACTTCTTTGTGGAATTGC
TGACGGGACAAGACCTGCCTATCAAGGAGAAATCACCAGGACATACCCAA
TCGAAGAACTAACCAACTTAAACACAAAAATCTACACGTTCGCTATTGTC
TGTCACGCTATCGCACCTGTATCCCCCATAGTGTTTCGATGGatcaattt
taatttgtttGGATTCGAATTTAACCAATACAATTTTTGTAGTGttgttt
taattgttttgaCCATCATGTATCAATTAATTGCTTATTTTCTTTTAACT
GATATGACCAGAGATCGAGGATATCAGATTTTCCTCAGGATTTATAATAA
AACAGATGACAGTGCGATCGTTCTACAGCTTGCAGAAACTGAAACTGAGC
AAAGTAACCAGAATAATCTCCAAAGTTCTCATGATCATGAAACTCATGAA
AAGTTGAACAGAAACCAAAAATCATTACATCTGAATGATGATAGCGAATT
TGTGCTCAATGCTCTGGAAAGTGACCAGTCATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005845-exon-sc0000061-1491911889:403012..403724 | TCONS_00005845-exon-sc0000061-1491911889:403012..403724 | Clytia hemisphaerica | exon |
| TCONS_00005845-exon-sc0000061-1510915933:403012..403724 | TCONS_00005845-exon-sc0000061-1510915933:403012..403724 | Clytia hemisphaerica | exon |
| TCONS_00005845-exon-sc0000061-1575043694:403012..403724 | TCONS_00005845-exon-sc0000061-1575043694:403012..403724 | Clytia hemisphaerica | exon |
| TCONS_00005845-exon-sc0000061-1491911889:404210..404668 | TCONS_00005845-exon-sc0000061-1491911889:404210..404668 | Clytia hemisphaerica | exon |
| TCONS_00005845-exon-sc0000061-1510915933:404210..404668 | TCONS_00005845-exon-sc0000061-1510915933:404210..404668 | Clytia hemisphaerica | exon |
| TCONS_00005845-exon-sc0000061-1575043694:404210..404668 | TCONS_00005845-exon-sc0000061-1575043694:404210..404668 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:403012..404668 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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