TCONS_00005834 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005834
Unique NameTCONS_00005834
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005834 ID=TCONS_00005834|Name=TCONS_00005834|organism=Clytia hemisphaerica|type=transcript|length=2304bp
AGGTAATAGCAACTCAATAACATCTTTCCAACGTGACCGAACACCTCTta
aaccatcaaagaattcgGAAGAAAAATCCgcgcatgaaaatttcaatcaa
ttcaATCTCGATAACGCGAAATCATCAAACACAGACGGCGAAAATGTACA
GCATTCCGGCGGTAGCAGTAATCCTTACGTACATGCAGACGAAAAAGCGG
ATCTTGTTCAAAAGCCAAGCTTGCTGTCGACCAGTGGAGAGACGTTTACC
AAAGACTCAGATCCaaactttttcattaaaaAGCAAGACTTGAAAGAGGG
GAGTGTAGCTAAAAGAGATTCTTCAAACAACCCACCACCTCCTAACATGA
GGCTATTTGGTAAGTACACTTCTTTATTCAAACCATCTAATTTGGTTAGT
TTAATGGGTTATTGTGCACTCTGAGGAAAAGACGTTTTATCTGGCCCCTC
CCCTATGATAATATATACTAAGATACGGTATATTGGACGTTTTTCCTGTA
GCAGGGTGTTTAAGTAGATAGAAAGATAGAAGGTAGATCAAATACCAACA
GCTATTTGAATATTCCATTTTTCCAAGACGGGAATCCAAGAGATGCGACT
TTGGAGGTTAAATTCTTGGAGTAAATCTGATTTCGATTCTTAAGCTCATA
TTCagcattgaaataaaaatgcacAAAATGTGCAAATAAACAGATTGACC
AAAACTGCATAGCTTCTTCCCAGCAATATatcatttcaaaatatatagAC
CGCATCTAGAACTAGATCCTATAAAGTTAAAGGAGGATGGGTTTGTTGAT
ATTTTGGGGGCTTCTTTTACAAGTGATATTGATGTGCAAATGTGATAatc
ttttagaaaaacaaaagcAGGTTACTGGCAGAAAGCGAGATGAATCAAAT
GGTATTCTAACATCGGATCCATTTCTCGAGGCCGTTCACTTTTGGCCGTT
CGAAACAAACAAAGGAATATTGACAAGCGATTTGATCACTGGTTCAGATG
CTATCTTAATGGGTGGAgctaaaatcactaaaaaagGAGCACCAAATTCA
CCGCAAGGGCAACAAAATTACTACAATACACAAGGAGCCAGTCACATGCC
ATCGCAACAACAACAAATGCCACCGCACCGAAAGAGAAGTAGTTCCAATC
ATCTCCAAGTGAGAAGAGAAGAAGAGGAGGATGTAGAAGTTTTCGACTCG
TTTTTGGACACCAAAATGAACGGTAGTTACGTTATCGCTGGTGATTTTAA
TGGAACTTGTTTTAGTGATCCAGACTTGTGTAAGTTGAACGGGATGACCA
TATACACTTGGTTGAAGATTGATGCAAAAGAATTGGAGAGTACACAAAAT
GCTATAGGACGAGATGCTTACATATTGAGCACTGGTGGCCAATCTAAGAA
ATCACGAGGTTTCGCTTTCCTATGGTTTCATGGTAAATTTGTCATGGTTA
TCAGTACCGaaacaaaacaatggaaattaGAAATGCCgaaagataaaata
aaacacGATGAATGGGTCCagctttcttttgtttggaataCAGACACATT
AACTGGTTATCAAGATGGGACCAAAATAGGTAGCACCAAGGGCGTGGCCG
CTGAACGTCCGGAAGTCCAGTTCACTATTATGACTATCGGACGTCCGAAT
AATGCAGTCGACGCACGCTTCATGATGAAAATGGAAATGGCTTATTTGAC
GTTATGGGATAAAGCATTGGAAGTAAAAGAACTCGATAAATCATATGAAA
ATATAAAACAAAAGATCGATAAGACGAGGAGACGTagtattttagaaaaa
cattctACCATACAACAGCACGCATTGGTGAACAGGGAAATGCAAAACTA
AACAGCTGAATTCATGTAACTTGACAGAGATACTGAATCACCATACAAGA
AGCTCTCCGAGAAACCATGTCTTGAAATAAGGCGACGGTGTGATGTAGAA
AAATTAAGAACTTTTGCGTGTGTAAAATACAGACCAATTCGCTTCGTATG
CTAATGACCCTACGAGGAAAATTTCGATAGGCTTAACGTATAGCCGTCAT
ATCATTCGAACTAAATAAAGTGTTATgaaaattttgtaataaaaatcaat
GATAATCAACCGTCAGTTTGAAACGCCTGTAATGTTTTACTACTGATTAA
AACAATAATAATACTTTCCCAAGAATTTATTTTGGTGGgctaaaaatttg
atttgatttgatttgattaagTAGCTCCCGCTTTTTTGGAATCTTGAATT
ATTTCTagtaattatattttttaaatgcatgtaaataaattaaaagaaaa
ttaa
Run BLAST on NCBI

transcript from alignment at sc0000061:151191..156461+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005834 ID=TCONS_00005834|Name=TCONS_00005834|organism=Clytia hemisphaerica|type=transcript|length=5271bp|location=Sequence derived from alignment at sc0000061:151191..156461+ (Clytia hemisphaerica)
AGGTAATAGCAACTCAATAACATCTTTCCAACGTGACCGAACACCTCTta
aaccatcaaagaattcgGAAGAAAAATCCgcgcatgaaaatttcaatcaa
ttcaATCTCGATAACGCGAAATCATCAAACACAGACGGCGAAAATGTACA
GCATTCCGGCGGTAGCAGTAATCCTTACGTACATGCAGACGAAAAAGCGG
ATCTTGTTCAAAAGCCAAGCTTGCTGTCGACCAGTGGAGAGACGTTTACC
AAAGACTCAGATCCaaactttttcattaaaagtaaaataatttttctgat
attttcacACAAATTAGAGCTGTAAAAAATGTCATATCTGATCCAAAAGA
TCAGCTGCAGTAGTTATTCACTGGGTAGCAGGGGGGAGGTACGAAAGGGA
AAATGCCAAAACGCACTTTTTTGTTACAGTaatgaacaaaataaaataac
taGATTTTAGTGAGGTACTCGTCAGTGTTAGGTctgctttcaaaattttc
atttgaaatatttgacaACGCAGAGACCATTTGAAGCCGCGACAGtgact
ttttaaatgtttttctctCTTTAGAGCAAGACTTGAAAGAGGGGAGTGTA
GCTAAAAGAGATTCTTCAAACAACCCACCACCTCCTAACATGAGGCTATT
TGGTAAGTACACTTCTTTATTCAAACCATCTAATTTGGTTAGTTTAATGG
GTTATTGTGCACTCTGAGGAAAAGACGTTTTATCTGGCCCCTCCCCTATG
ATAATATATACTAAGATACGGTATATTGGACGTTTTTCCTGTAGCAGGGT
GTTTAAGTAGATAGAAAGATAGAAGGTAGATCAAATACCAACAGCTATTT
GAATATTCCATTTTTCCAAGACGGGAATCCAAGAGATGCGACTTTGGAGG
TTAAATTCTTGGAGTAAATCTGATTTCGATTCTTAAGCTCATATTCagca
ttgaaataaaaatgcacAAAATGTGCAAATAAACAGATTGACCAAAACTG
CATAGCTTCTTCCCAGCAATATatcatttcaaaatatatagACCGCATCT
AGAACTAGATCCTATAAAGTTAAAGGAGGATGGGTTTGTTGATATTTTGG
GGGCTTCTTTTACAAGTGATATTGATGTGCAAATGTGATAatcttttaga
aaaacaaaagcAGGTTACTGGCAGAAAGCGAGATGAATCAAATGGTATTC
TAAGTAAGtttgtttattgttttgttCATATTAAACTTTATAATATGGTA
TTTGTGTGTTTATCGAAAATCTAGAACAGTCTTCATAAACGTCTTCTACG
AGTTTGCGATTTGTGATAATAAACTTAAGCAGCTGAAAATAATTTCATAT
ATTCctctttttttcataagaaccagtaaattcttgTTTCGACTCGGCTC
TTCATATCATTTTGACACTTGGAGCTTCATATTGTTTTTATACTGTTTGC
ATTCGAAAAATCGAGGCTTTTTTGCACTTTAAACCTATAAATGtttgaaa
ttcagcaatttCAGGCTCAGGATTCAGGAGATTCATTTTCTAATAAAATT
GCTCTTATAAaataaagagcttcattataatgtAAAACCAATAACTTCTT
GCAGCATCGGATCCATTTCTCGAGGCCGTTCACTTTTGGCCGTTCGAAAC
AAACAAAGGAATATTGACAAGCGATTTGATCACTGGTTCAGATGCTATCT
TAATGGGTGGAgctaaaatcactaaaaaaggtTAGTAGTTATAAATCTAG
TACAAACCTTATTCCCATAGCGAATCTTCGTGTTTTCCGCCGGATGGTGT
TCGACCCACAGatttttaaagcccgaagggctagatgtcgtgctttaagc
catcgcaggctgAATATTGAATATCGCAAGAAATAtagtttctattgttt
tcgaaaatccgcgaagcttctgattggtcaagcgctgaaattctattata
atgtcacgttacctaggtaggatttcctacctaaccgcggcacacttttc
aacaagagcacgacatctagcccttcgggctttacaaatcTGTGGGACCC
AATTAAAATAATCAAAGGGTTGTCTAAAGGTCCCATATTATACCCTTCAA
TGCATGTTAAATTAAATACACAAGGGCCTCCTCTTCTACACTCTTCAACC
ACTTAAACACTCCTGCGTCAAAGACCCGGCCCCGACCCCGGCCCCCAACC
CCGACCCCGGCCCCGACCCCGGCCCCCGTCCCCGACCCCGACCCCGACCC
CGACCCCGACCCCGACCCCGACCCCGACCCCGACCCCGACCCCCGCCCCC
GCCCCACTGGTAAATTCAcccaatttcagacccaatggTAAATTGACGTT
GATTTCATCCTcacttgaaattcaatggaaataTTGCACTCCAAAAGATC
CCATTAGGAATTCTTTagctgggaacaatagaatttcgatTAAAATACTG
AAGAAAAATCACCTTAAGACAATCCAAAAGAGAATATAACCTTTAAGAAT
CCAAAACTCTTTATACCAATATCATTTTTTTCCATCAAAGGAGCACCAAA
TTCACCGCAAGGGCAACAAAATTACTACAATACACAAGGAGCCAGTCACA
TGCCATCGCAACAACAACAAATGCCACCGCACCGAAAGAGAAGTAGTTCC
AATCATCTCCAAGTGAGAAGAGAAGAAGAGGAGGATGTAGAAGTTTTCGA
CTCGTTTTTGGACACCAAAATGAACGGTAGTTACGTTATCGCTGGTGATT
TTAATGGTAAGAAACAAACACCATTTATCATGATATTAGACTTAGAATTC
ATAAAAATGAAAGCGAGTTCGGAAAAAGACTTGATACCAGTCGAGCGTGG
CGGCTCGACCAAAATTTAAGCAAACTGGGAAGACAATTTTAGGATTTTGG
GATCTTTCCGTCCCCTATTAAACGTAAGATATCCAGAATATGACCAGAAT
AGGATTCCAAGCTAATTTTAATAATCTTCTTCAAAGTATTTTGGTACGTT
TTCCTCGACAGGAACTTGTTTTAGTGATCCAGACTTGTGTAAGTTGAACG
GGATGACCATATACACTTGGTTGAAGATTGATGCAAAAGAATTGGAGAGT
ACACAAAATGCTATAGGACGAGATGCTTACATATTGAGCACTGGTGGCCA
ATCTAAGAAATCACGAGGTTGGTTTACATTCAAATATTGCAcgtaaggcg
aaaataaaaaaatatagtgtttccggaatgcagGTAAAGGAAAAAGGCTC
TCACGCGGCCggccgaaaaaattttttttgctaatcattgaaatagagct
ttaaaaataacttttatttacaaacagtatgaagtaagccctgaatacta
atgcaTCAACTAATAACGagcaaaacttgatttacaagcgagaatatcta
accaaacgacgtttgatagcttggacggtcaacttgatttttttcccCGG
CCGCTTTCCGGAAACactgcatttttttattttcgcctaacgGATAATTA
ATTTGGATTGATTTTGTATCACGTAATCAGAAGTAATTAGGATAATTTGA
AGTTCCTTCGGACAACCTATATTTCTAGCCTTGTGCACAATGTCGGTTCG
AGCTGGAGAATTCCTACGAGCTCTACAATTTAATTTACACAATTTTTCTA
TTTCAGGTTTCGCTTTCCTATGGTTTCATGGTAAATTTGTCATGGTTATC
AGTACCGaaacaaaacaatggaaattaGAAATGCCgaaagataaaataaa
acacGATGAATGGGTCCagctttcttttgtttggaataCAGACACATTAA
CTGGTTATCAAGATGGGACCAAAATAGGTAGCACCAAGGGCGTGGCCGCT
GAACGTCCGGAAGTCCAGTTCACTATTATGACTATCGGACGTCCGAATAA
TGCAGTCGACGCACGCTTCATGATGAAAATGGAAATGGCTTATTTGACGT
TATGGGATAAAGCATTGGAAGTAAAAGAACTCGATAAATCATATGAAAAT
AGTAAGTATTATTTGTACTCATTGCGTAGCACAACCCTGTAGTGTTAATG
TACCTAGAAAAATGTTAACTCTGATCATTTACTGATTAAACCAGGAAGTT
TTTACCTTGATTTAACAACTTCAAACTTGGTAAAATGaataattttatgg
attttaaactgaataaaaatgttcgactTTTACAGGGTCGATAGTGAATG
AAGAATTTTAGAAtctaggcgaaaataaaaaatgcagtgtttccggaatg
cggctGAAGGAAAAAGGCTCTTATGCAGCCGGTcggaaaaagcttttttt
ttgctaattttgataacttaagatcattgtaatagaactttaaagatgac
ttttatgtacaaacaatATGAAATAAGCCCTGAATACAgctgtatcaact
actaacgaacaaaacttggtttacaagcgggaatatctaaccaaacaaCG
TTTGATAGCTTGGACGGTCAACTTGATTTCCTTTATGAAaaaccatatag
atgaacccatagtctgcggccgggtgagaaaatactttttgttcacccgg
ccggtttccggaaacactatttttttattttagccctattttctatgttt
tataAGGGAAAATTGACTGAAATTACTAAATTagatttttaattactttt
caACAAATCATTGTTAACTTCGTTCATAGACCTGacattcgataaaaaat
tccattttttattGTTATAGTAAAACAAAAGATCGATAAGACGAGGAGAC
GTagtattttagaaaaacattctACCATACAACAGCACGCATTGGTGAAC
AGGGAAATGCAAAACTAAACAGCTGAATTCATGTAACTTGACAGAGATAC
TGAATCACCATACAAGAAGCTCTCCGAGAAACCATGTCTTGAAATAAGGC
GACGGTGTGATGTAGAAAAATTAAGAACTTTTGCGTGTGTAAAATACAGA
CCAATTCGCTTCGTATGCTAATGACCCTACGAGGAAAATTTCGATAGGCT
TAACGTATAGCCGTCATATCATTCGAACTAAATAAAGTGTTATgaaaatt
ttgtaataaaaatcaatGATAATCAACCGTCAGTTTGAAACGCCTGTAAT
GTTTTACTACTGATTAAAACAATAATAATACTTTCCCAAGAATTTATTTT
GGTGGgctaaaaatttgatttgatttgatttgattaagTAGCTCCCGCTT
TTTTGGAATCTTGAATTATTTCTagtaattatattttttaaatgcatgta
aataaattaaaagaaaattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003329XLOC_003329Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005834-exon-sc0000061-1491911889:151191..151471TCONS_00005834-exon-sc0000061-1491911889:151191..151471Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1510915933:151191..151471TCONS_00005834-exon-sc0000061-1510915933:151191..151471Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1575043694:151191..151471TCONS_00005834-exon-sc0000061-1575043694:151191..151471Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1491911889:151765..152393TCONS_00005834-exon-sc0000061-1491911889:151765..152393Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1510915933:151765..152393TCONS_00005834-exon-sc0000061-1510915933:151765..152393Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1575043694:151765..152393TCONS_00005834-exon-sc0000061-1575043694:151765..152393Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1491911889:152795..152920TCONS_00005834-exon-sc0000061-1491911889:152795..152920Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1510915933:152795..152920TCONS_00005834-exon-sc0000061-1510915933:152795..152920Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1575043694:152795..152920TCONS_00005834-exon-sc0000061-1575043694:152795..152920Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1491911889:153731..153946TCONS_00005834-exon-sc0000061-1491911889:153731..153946Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1510915933:153731..153946TCONS_00005834-exon-sc0000061-1510915933:153731..153946Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1575043694:153731..153946TCONS_00005834-exon-sc0000061-1575043694:153731..153946Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1491911889:154202..154357TCONS_00005834-exon-sc0000061-1491911889:154202..154357Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1510915933:154202..154357TCONS_00005834-exon-sc0000061-1510915933:154202..154357Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1575043694:154202..154357TCONS_00005834-exon-sc0000061-1575043694:154202..154357Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1491911889:154847..155191TCONS_00005834-exon-sc0000061-1491911889:154847..155191Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1510915933:154847..155191TCONS_00005834-exon-sc0000061-1510915933:154847..155191Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1575043694:154847..155191TCONS_00005834-exon-sc0000061-1575043694:154847..155191Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1491911889:155911..156461TCONS_00005834-exon-sc0000061-1491911889:155911..156461Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1510915933:155911..156461TCONS_00005834-exon-sc0000061-1510915933:155911..156461Clytia hemisphaericaexon
TCONS_00005834-exon-sc0000061-1575043694:155911..156461TCONS_00005834-exon-sc0000061-1575043694:155911..156461Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:151191..156461 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0169345	0	0.0808244	0.0375177	0	0	0.843101	0.809616	1.24558	0.486299	0.120484	0.50735	0.765274	0.90858	0.544639	2.00383	0.765361	1.13713	0	0	1.14562	0.655273	0.616759	0.921671	0.260936	0.745658	0.238788	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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