TCONS_00005833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005833
Unique NameTCONS_00005833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005833 ID=TCONS_00005833|Name=TCONS_00005833|organism=Clytia hemisphaerica|type=transcript|length=564bp
CCACAACGAATGAGTAATACCGAAGACAGAAACGACAAACAAGAGAAGAA
CGGGGAGAGTGAAAAAAAGCTCAAAGAAGTGAAAGATCACTCTAACGAAC
AAGAGAAGGGTGAGGAAAACTCTCGACAAGgaacagaagaaaaaaatgaa
ggtagATTCACACAAGATGAACAACAGAGAGAATCTTCACAACATTTTAC
ACAATCACCCAGCAATGATAATGAGCAGCAACGtgttaattctttttcaa
atgatGTCAGTTGGAAAGGTAAAGGGAAGTTCAGTATGGGGAAATGGTCC
AATCGATTGAAAGGAGAGAAAGACGAACAAGAAGTTGCAGACCatgaaaa
attagtttcaacCGGTAAGAATGACGAGGAGAGGAATGGGGAGGAGAGAA
AATATACACAACAACATCAAAGCAAAGGTAATAGAGAAGAGAACAGATAC
CCTGAGGAGAGTAGGTTTACACAACAACATAAACATCAAGCAGATAGCAA
GGAAACTGATGAATCTCCATCAAAGAATGGTGCTAGTGATGGTGAACTGA
Gcagtaaagaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000061:142439..143772+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005833 ID=TCONS_00005833|Name=TCONS_00005833|organism=Clytia hemisphaerica|type=transcript|length=1334bp|location=Sequence derived from alignment at sc0000061:142439..143772+ (Clytia hemisphaerica)
CCACAACGAATGAGTAATACCGAAGACAGAAACGACAAACAAGAGAAGAA
CGGGGAGAGTGAAAAAAAGCTCAAAGAAGTGAAAGATCACTCTAACGAAC
AAGAGAAGGGTGAGGAAAACTCTCGACAAGgaacagaagaaaaaaatgaa
ggtagATTCACACAAGATGAACAACAGAGAGAATCTTCACAACATTTTAC
ACAATCACCCAGCAATGATAATGAGCAGCAACGtgttaattctttttcaa
atgatGTCAGTTGGAAAGGTAAATTAGAGTTGCATATGTTTTCTAGGTTC
TGACACTTGATTTaatgaaataaagaagtcatgaCAATCGTCTATCATTA
GATTtcacatttgaaaaaattttctctgtctGGGAAGAAAGCATTTTTCA
CTGGTCTTTATGGAAGCTTTCCCTTCTGTCTCTATTGCAGGTAAAGGGAA
GTTCAGTATGGGGAAATGGTCCAATCGATTGAAAGGAGAGAAAGACGAAC
AAGAAGTTGCAGACCatgaaaaattagtttcaacCGGTATAGATAGTTGA
ATCATTTCTGTATTCAATTTTACTTTTACAAGATACAAAATCCTAAATTT
TTGAGCGGGTAGCATTCAATAAAGTAAGCTTAGTATTAGAAGATTTCAAT
GGCCGACAAGTGCcccaaaattaacaaaatcatTATTGCATCAACGGCCA
TATCATCCTAGTATTCCTTCCAAAAAGCCAGTAGGCTTTGCGACCTTTAC
TGAGTCCATAGTTAACAGGTCTGTAGCGATGACTAGAATATGGGAACTCC
TGACTTGTGGCACTGACGGCACTTGACCATAACCACAATAatgcaataaa
tttttttcaacctTTAGGTAAGAATGACGAGGAGAGGAATGGGGAGGAGA
GAAAATATACACAACAACATCAAAGCAAAGGTGAAGATCACGGATACTCA
CATCAAGAAGAAGGTAAATTACCGCTAGtctaaagaaaaaacttttaccA
GAACTTAGCAAAGGTTCCAATTACCCAAACGAGGAAGGAAATAGGTacta
aaaacaaggaaaaagtttgattgaaaacaataaagtttAATCATAGTCGA
ATACCACCACCAGTTAAGATTGTGTCACGTtgtcaaaaatgtttgaaaac
tgGAAAATTGAGATCGTGAAAAAAACTCCGTATCTTTCCTTCATCAGGTA
ATAGAGAAGAGAACAGATACCCTGAGGAGAGTAGGTTTACACAACAACAT
AAACATCAAGCAGATAGCAAGGAAACTGATGAATCTCCATCAAAGAATGG
TGCTAGTGATGGTGAACTGAGcagtaaagaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003328XLOC_003328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005833-exon-sc0000061-1491911889:142439..142706TCONS_00005833-exon-sc0000061-1491911889:142439..142706Clytia hemisphaericaexon
TCONS_00005833-exon-sc0000061-1510915933:142439..142706TCONS_00005833-exon-sc0000061-1510915933:142439..142706Clytia hemisphaericaexon
TCONS_00005833-exon-sc0000061-1575043694:142439..142706TCONS_00005833-exon-sc0000061-1575043694:142439..142706Clytia hemisphaericaexon
TCONS_00005833-exon-sc0000061-1491911889:142879..142974TCONS_00005833-exon-sc0000061-1491911889:142879..142974Clytia hemisphaericaexon
TCONS_00005833-exon-sc0000061-1510915933:142879..142974TCONS_00005833-exon-sc0000061-1510915933:142879..142974Clytia hemisphaericaexon
TCONS_00005833-exon-sc0000061-1575043694:142879..142974TCONS_00005833-exon-sc0000061-1575043694:142879..142974Clytia hemisphaericaexon
TCONS_00005833-exon-sc0000061-1491911889:143306..143368TCONS_00005833-exon-sc0000061-1491911889:143306..143368Clytia hemisphaericaexon
TCONS_00005833-exon-sc0000061-1510915933:143306..143368TCONS_00005833-exon-sc0000061-1510915933:143306..143368Clytia hemisphaericaexon
TCONS_00005833-exon-sc0000061-1575043694:143306..143368TCONS_00005833-exon-sc0000061-1575043694:143306..143368Clytia hemisphaericaexon
TCONS_00005833-exon-sc0000061-1491911889:143636..143772TCONS_00005833-exon-sc0000061-1491911889:143636..143772Clytia hemisphaericaexon
TCONS_00005833-exon-sc0000061-1510915933:143636..143772TCONS_00005833-exon-sc0000061-1510915933:143636..143772Clytia hemisphaericaexon
TCONS_00005833-exon-sc0000061-1575043694:143636..143772TCONS_00005833-exon-sc0000061-1575043694:143636..143772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:142439..143772 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.125953	0	0.172308	0	0.54511	1.01726	0.871653	0	0.364124	0.559659	0.260427	0.922824	0	3.2502	1.75086	1.35818	0	0	0.38803	0.882793	0.805508	0	3.37116	1.31099	0.486018	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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