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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005824 ID=TCONS_00005824|Name=TCONS_00005824|organism=Clytia hemisphaerica|type=transcript|length=967bp
CAAAAAACAACGACCAAGCAAGAAACCACAATTGTGGGTTTGAAACTTTA
ACTTTACCTTTTGACAGTCCATGGAGTCCCCAGTCCCAGAAATAGAAAGA
CTCCCAGGAGCATCCTCCGAAACAGAAAGGGTAAATGACTGAGTTGAATT
AGAGGCAGAAGCTGGCCGGGGAAGAAGCAAATTAAAGTTAACAAACTCAC
CCTTCTGAATTTTATCTAGCTGCTGCTGTGGAATTCCAGGAATGGCAATG
TTTTGACGGTTTGAAAACGGTGGAGGGTGTAGATTAGCCTCGAAAGTATA
GGGGGGAGCCTCGGCACTGCGTACAAAATGGCGGCGAAGTTGTGCAGGat
tattgttgttattattttctCTCCTCCTGCGGTGTCTTCTCGTGCGACGA
GATTTTCTTCGGTTTCTCCTCGAACGACGACGAGTGGCAAAGGCGGTTGG
GGTTTCACGATGTAAATTCTCTTCTTGCTGTCTCTGTCTGTTCGAATTTA
AGATGGTTTGCTCGCGATCAAACGCTTCAAGCCGTAGAATTAATGTAGGG
CGTGACCCTGAAGTTTGAATGTTTCGTAATTTGCAGGCGTCTTGTAGGGC
CTCTTTAGTGAAACGTTGGTATGAAGATGAATGGGTTATAGCATCAGTTG
TTCTTGTGTCTTGTTGTGGCTCGTGTTGGTTGTCTGACAAGACCGATTCA
TCGTCCACCAACGGCATTGTTCTTGCTCTCTTCTTAGGTGGTGGTGGTTC
CTCATCAGAAGAACTACAGGATGAATTTGAAGAGCTCGAACTGCTCGAAC
CCGAAGGATCAGCCAAGCACAAGGTTAGAATTGTgagatttataaaaaca
aatatcttcatGACTGCTTAGAGTAACCAAGACTGACGATGTTCGAAAGA
AGCGTTACTAGAGACTGAGGTATTTTATATATGAGACCACGCACGAGGTC
GGCTAAATTTAGAACCC Run BLAST on NCBI protein sequence of TCONS_00005824-protein >TCONS_00005824-protein ID=TCONS_00005824-protein|Name=TCONS_00005824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MKIFVFINLTILTLCLADPSGSSSSSSSNSSCSSSDEEPPPPKKRARTMP
LVDDESVLSDNQHEPQQDTRTTDAITHSSSYQRFTKEALQDACKLRNIQT
SGSRPTLILRLEAFDREQTILNSNRQRQQEENLHRETPTAFATRRRSRRN
RRKSRRTRRHRRRRENNNNNNPAQLRRHFVRSAEAPPYTFEANLHPPPFS
NRQNIAIPGIPQQQLDKIQKGEFVNFNLLLPRPASASNSTQSFTLSVSED
APGSLSISGTGDSMDCQKVKLKFQTHNCGFLLGRCFL Run BLAST on NCBI transcript from alignment at sc0000059:780262..781228 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005824 ID=TCONS_00005824|Name=TCONS_00005824|organism=Clytia hemisphaerica|type=transcript|length=967bp|location=Sequence derived from alignment at sc0000059:780262..781228 (Clytia hemisphaerica)
GGGTTCTAAATTTAGCCGACCTCGTGCGTGGTCTCATATATAAAATACCT
CAGTCTCTAGTAACGCTTCTTTCGAACATCGTCAGTCTTGGTTACTCTAA
GCAGTCatgaagatatttgtttttataaatctcACAATTCTAACCTTGTG
CTTGGCTGATCCTTCGGGTTCGAGCAGTTCGAGCTCTTCAAATTCATCCT
GTAGTTCTTCTGATGAGGAACCACCACCACCTAAGAAGAGAGCAAGAACA
ATGCCGTTGGTGGACGATGAATCGGTCTTGTCAGACAACCAACACGAGCC
ACAACAAGACACAAGAACAACTGATGCTATAACCCATTCATCTTCATACC
AACGTTTCACTAAAGAGGCCCTACAAGACGCCTGCAAATTACGAAACATT
CAAACTTCAGGGTCACGCCCTACATTAATTCTACGGCTTGAAGCGTTTGA
TCGCGAGCAAACCATCTTAAATTCGAACAGACAGAGACAGCAAGAAGAGA
ATTTACATCGTGAAACCCCAACCGCCTTTGCCACTCGTCGTCGTTCGAGG
AGAAACCGAAGAAAATCTCGTCGCACGAGAAGACACCGCAGGAGGAGaga
aaataataacaacaataatCCTGCACAACTTCGCCGCCATTTTGTACGCA
GTGCCGAGGCTCCCCCCTATACTTTCGAGGCTAATCTACACCCTCCACCG
TTTTCAAACCGTCAAAACATTGCCATTCCTGGAATTCCACAGCAGCAGCT
AGATAAAATTCAGAAGGGTGAGTTTGTTAACTTTAATTTGCTTCTTCCCC
GGCCAGCTTCTGCCTCTAATTCAACTCAGTCATTTACCCTTTCTGTTTCG
GAGGATGCTCCTGGGAGTCTTTCTATTTCTGGGACTGGGGACTCCATGGA
CTGTCAAAAGGTAAAGTTAAAGTTTCAAACCCACAATTGTGGTTTCTTGC
TTGGTCGTTGTTTTTTG Coding sequence (CDS) from alignment at sc0000059:780262..781228 >TCONS_00005824 ID=TCONS_00005824|Name=TCONS_00005824|organism=Clytia hemisphaerica|type=CDS|length=861bp|location=Sequence derived from alignment at sc0000059:780262..781228 (Clytia hemisphaerica)
atgaagatatttgtttttataaatctcACAATTCTAACCTTGTGCTTGGC
TGATCCTTCGGGTTCGAGCAGTTCGAGCTCTTCAAATTCATCCTGTAGTT
CTTCTGATGAGGAACCACCACCACCTAAGAAGAGAGCAAGAACAATGCCG
TTGGTGGACGATGAATCGGTCTTGTCAGACAACCAACACGAGCCACAACA
AGACACAAGAACAACTGATGCTATAACCCATTCATCTTCATACCAACGTT
TCACTAAAGAGGCCCTACAAGACGCCTGCAAATTACGAAACATTCAAACT
TCAGGGTCACGCCCTACATTAATTCTACGGCTTGAAGCGTTTGATCGCGA
GCAAACCATCTTAAATTCGAACAGACAGAGACAGCAAGAAGAGAATTTAC
ATCGTGAAACCCCAACCGCCTTTGCCACTCGTCGTCGTTCGAGGAGAAAC
CGAAGAAAATCTCGTCGCACGAGAAGACACCGCAGGAGGAGagaaaataa
taacaacaataatCCTGCACAACTTCGCCGCCATTTTGTACGCAGTGCCG
AGGCTCCCCCCTATACTTTCGAGGCTAATCTACACCCTCCACCGTTTTCA
AACCGTCAAAACATTGCCATTCCTGGAATTCCACAGCAGCAGCTAGATAA
AATTCAGAAGGGTGAGTTTGTTAACTTTAATTTGCTTCTTCCCCGGCCAG
CTTCTGCCTCTAATTCAACTCAGTCATTTACCCTTTCTGTTTCGGAGGAT
GCTCCTGGGAGTCTTTCTATTTCTGGGACTGGGGACTCCATGGACTGTCA
AAAGGTAAAGTTAAAGTTTCAAACCCACAATTGTGGTTTCTTGCTTGGTC
GTTGTTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005824-exon-sc0000059-1491911889:780262..781228 | TCONS_00005824-exon-sc0000059-1491911889:780262..781228 | Clytia hemisphaerica | exon |
| TCONS_00005824-exon-sc0000059-1510915933:780262..781228 | TCONS_00005824-exon-sc0000059-1510915933:780262..781228 | Clytia hemisphaerica | exon |
| TCONS_00005824-exon-sc0000059-1575043694:780262..781228 | TCONS_00005824-exon-sc0000059-1575043694:780262..781228 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:780262..781228 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003034 | SAP_dom |
Blast
The following BLAST results are available for this feature:
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