|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005818 ID=TCONS_00005818|Name=TCONS_00005818|organism=Clytia hemisphaerica|type=transcript|length=1239bp
CGTAACCAAGCTTTccttgaattttgtttttaacatcTGCTACTCTGTCT
GAATctttcatcaatattttaaatttctGATTACATATACTCGATTCGTT
TGGAACAAAGCTGACTGTCAAACGCTCCTCGTATATCAATGATAGTATTA
CGGTACTTTtatcagaattttcaaaaagtctaCTTAGCTCGTCagtggtt
tttattttagtgctGTGGAATAAGAAAGTTATATCTCTTGAAAGAATTTC
GGCTCTTTCACTAATACCATTCTTGAGCTCCATCATCGTTTGGAAACGCC
GTGTTTTGTCCTGAGCCTCCTCATCTTTGcacaaaagtttaatttttaat
tCCATACTGGCGAAGTCGAAATCAATCAAGTAAAAACATTCTTCTTTCCT
TTCTTGAAATTGTCTCTCTTGATTCACTTGAATTTGATTCGTTTGAATCT
GATTGGCTTGAATATCGATGTTTGTTAGTATATCAAGTTTGTTGCCGCGG
TATACCTTCTTGTATTCAGGCGAATGGTTATGGAGGAGTGCTAGATGCAA
TCGAACAACTCGAATTCGTTTCTTTCCTTCTCTACCTCGATCTCTTATCT
TTCTGTCTTCAAAGTGTGCTAAATCTACAACCAATTCATTGTCCTGTATC
GTATGCATAGGTTCCTTTCGTTTCCGAAAAAGCATTTGCATGGATGCCGG
TATAGAagttttctggaaaattttatcCTTCAAATCACAAATAACCGGAG
TATCCGAAATTGTCAAATTAAAGCAGCATATCCTTTTGGGATACACTTTA
TATTCTGTGCGATATGCAACAACCTCGATTCGGACTTCGTCATTACCGGG
GTATTGTCCGTCATAACGTTCTTCTTGACAGTCATCACAGCGTATCGGCC
GACTGACGCTATATCGGTAATATTGATCATCCAGCAATTCCTCATAACAA
CTCGCACAACGTGGCCCTCTACTCGACCATTCATCCTTgtacttttcaaa
acattcgccACAATCTTCAATCTGTTTGCCATCATCACATTCACAATGTA
AACTTACAGATTTATCCAAAAATAAGGATTCATCCATTTCAGTGACAAAT
AAGTAAAACTATCCACGGGTCTCCTTTTgagaaaaagatgtttttctacc
GTTTAGCCTTCTTCAGCACGATATCTTTTACTGTATGGGTTTTCCCTGAA
GAGATCCGATGAAAAATTCATTGAATCATCTTATCGTAC Run BLAST on NCBI protein sequence of TCONS_00005818-protein >TCONS_00005818-protein ID=TCONS_00005818-protein|Name=TCONS_00005818-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
MDESLFLDKSVSLHCECDDGKQIEDCGECFEKYKDEWSSRGPRCASCYEE
LLDDQYYRYSVSRPIRCDDCQEERYDGQYPGNDEVRIEVVAYRTEYKVYP
KRICCFNLTISDTPVICDLKDKIFQKTSIPASMQMLFRKRKEPMHTIQDN
ELVVDLAHFEDRKIRDRGREGKKRIRVVRLHLALLHNHSPEYKKVYRGNK
LDILTNIDIQANQIQTNQIQVNQERQFQERKEECFYLIDFDFASMELKIK
LLCKDEEAQDKTRRFQTMMELKNGISERAEILSRDITFLFHSTKIKTTDE
LSRLFENSDKSTVILSLIYEERLTVSFVPNESSICNQKFKILMKDSDRVA
DVKNKIQGKLGY Run BLAST on NCBI transcript from alignment at sc0000059:718143..719381 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005818 ID=TCONS_00005818|Name=TCONS_00005818|organism=Clytia hemisphaerica|type=transcript|length=1239bp|location=Sequence derived from alignment at sc0000059:718143..719381 (Clytia hemisphaerica)
GTACGATAAGATGATTCAATGAATTTTTCATCGGATCTCTTCAGGGAAAA
CCCATACAGTAAAAGATATCGTGCTGAAGAAGGCTAAACggtagaaaaac
atctttttctcAAAAGGAGACCCGTGGATAGTTTTACTTATTTGTCACTG
AAATGGATGAATCCTTATTTTTGGATAAATCTGTAAGTTTACATTGTGAA
TGTGATGATGGCAAACAGATTGAAGATTGTggcgaatgttttgaaaagta
cAAGGATGAATGGTCGAGTAGAGGGCCACGTTGTGCGAGTTGTTATGAGG
AATTGCTGGATGATCAATATTACCGATATAGCGTCAGTCGGCCGATACGC
TGTGATGACTGTCAAGAAGAACGTTATGACGGACAATACCCCGGTAATGA
CGAAGTCCGAATCGAGGTTGTTGCATATCGCACAGAATATAAAGTGTATC
CCAAAAGGATATGCTGCTTTAATTTGACAATTTCGGATACTCCGGTTATT
TGTGATTTGAAGgataaaattttccagaaaactTCTATACCGGCATCCAT
GCAAATGCTTTTTCGGAAACGAAAGGAACCTATGCATACGATACAGGACA
ATGAATTGGTTGTAGATTTAGCACACTTTGAAGACAGAAAGATAAGAGAT
CGAGGTAGAGAAGGAAAGAAACGAATTCGAGTTGTTCGATTGCATCTAGC
ACTCCTCCATAACCATTCGCCTGAATACAAGAAGGTATACCGCGGCAACA
AACTTGATATACTAACAAACATCGATATTCAAGCCAATCAGATTCAAACG
AATCAAATTCAAGTGAATCAAGAGAGACAATTTCAAGAAAGGAAAGAAGA
ATGTTTTTACTTGATTGATTTCGACTTCGCCAGTATGGaattaaaaatta
aacttttgtgCAAAGATGAGGAGGCTCAGGACAAAACACGGCGTTTCCAA
ACGATGATGGAGCTCAAGAATGGTATTAGTGAAAGAGCCGAAATTCTTTC
AAGAGATATAACTTTCTTATTCCACagcactaaaataaaaaccactGACG
AGCTAAGtagactttttgaaaattctgataAAAGTACCGTAATACTATCA
TTGATATACGAGGAGCGTTTGACAGTCAGCTTTGTTCCAAACGAATCGAG
TATATGTAATCagaaatttaaaatattgatgaaagATTCAGACAGAGTAG
CAgatgttaaaaacaaaattcaaggAAAGCTTGGTTACG Coding sequence (CDS) from alignment at sc0000059:718143..719381 >TCONS_00005818 ID=TCONS_00005818|Name=TCONS_00005818|organism=Clytia hemisphaerica|type=CDS|length=1086bp|location=Sequence derived from alignment at sc0000059:718143..719381 (Clytia hemisphaerica)
ATGGATGAATCCTTATTTTTGGATAAATCTGTAAGTTTACATTGTGAATG
TGATGATGGCAAACAGATTGAAGATTGTggcgaatgttttgaaaagtacA
AGGATGAATGGTCGAGTAGAGGGCCACGTTGTGCGAGTTGTTATGAGGAA
TTGCTGGATGATCAATATTACCGATATAGCGTCAGTCGGCCGATACGCTG
TGATGACTGTCAAGAAGAACGTTATGACGGACAATACCCCGGTAATGACG
AAGTCCGAATCGAGGTTGTTGCATATCGCACAGAATATAAAGTGTATCCC
AAAAGGATATGCTGCTTTAATTTGACAATTTCGGATACTCCGGTTATTTG
TGATTTGAAGgataaaattttccagaaaactTCTATACCGGCATCCATGC
AAATGCTTTTTCGGAAACGAAAGGAACCTATGCATACGATACAGGACAAT
GAATTGGTTGTAGATTTAGCACACTTTGAAGACAGAAAGATAAGAGATCG
AGGTAGAGAAGGAAAGAAACGAATTCGAGTTGTTCGATTGCATCTAGCAC
TCCTCCATAACCATTCGCCTGAATACAAGAAGGTATACCGCGGCAACAAA
CTTGATATACTAACAAACATCGATATTCAAGCCAATCAGATTCAAACGAA
TCAAATTCAAGTGAATCAAGAGAGACAATTTCAAGAAAGGAAAGAAGAAT
GTTTTTACTTGATTGATTTCGACTTCGCCAGTATGGaattaaaaattaaa
cttttgtgCAAAGATGAGGAGGCTCAGGACAAAACACGGCGTTTCCAAAC
GATGATGGAGCTCAAGAATGGTATTAGTGAAAGAGCCGAAATTCTTTCAA
GAGATATAACTTTCTTATTCCACagcactaaaataaaaaccactGACGAG
CTAAGtagactttttgaaaattctgataAAAGTACCGTAATACTATCATT
GATATACGAGGAGCGTTTGACAGTCAGCTTTGTTCCAAACGAATCGAGTA
TATGTAATCagaaatttaaaatattgatgaaagATTCAGACAGAGTAGCA
gatgttaaaaacaaaattcaaggAAAGCTTGGTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005818-exon-sc0000059-1491911889:718143..719381 | TCONS_00005818-exon-sc0000059-1491911889:718143..719381 | Clytia hemisphaerica | exon |
| TCONS_00005818-exon-sc0000059-1510915933:718143..719381 | TCONS_00005818-exon-sc0000059-1510915933:718143..719381 | Clytia hemisphaerica | exon |
| TCONS_00005818-exon-sc0000059-1575043694:718143..719381 | TCONS_00005818-exon-sc0000059-1575043694:718143..719381 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:718143..719381 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029071 | Ubiquitin-rel_dom |
Blast
The following BLAST results are available for this feature:
|
