TCONS_00005816 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005816
Unique NameTCONS_00005816
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005816 ID=TCONS_00005816|Name=TCONS_00005816|organism=Clytia hemisphaerica|type=transcript|length=406bp
CTTTCCTGGTCCTGTTAAACTTagaatttcagtgaaaaattcaGATAAAG
TAGCAGACTTGAAAGATAAAATTCAAGGAAAGCTTAACGATGCTTCAAAG
TATGAAGGAGTCTTTTTGAAGAAAGGAAAGAAAGCTTTGCGGTTGGAAGA
CGATAAAAGTCTTTCAGATTACAATATCACTGAGCAGTCACTGTTAGCCG
CCAGTCAATACGTAGAAACCCATCTTCATTTCACTGACAGAGGGAAAACA
ATACGATACAATGAATGTATACCAAGAAAAAGCAAGGAGAGTATGAGCGA
CTTTATAAGTAAAATGCAAGAGAAATATAAACGTTTGATTACAGAGATTC
AAGACGAGAATGGGACTCGAGTAATAAATTTAAATCAACCattgagacat
tttttt
Run BLAST on NCBI

protein sequence of TCONS_00005816-protein

>TCONS_00005816-protein ID=TCONS_00005816-protein|Name=TCONS_00005816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
FPGPVKLRISVKNSDKVADLKDKIQGKLNDASKYEGVFLKKGKKALRLED
DKSLSDYNITEQSLLAASQYVETHLHFTDRGKTIRYNECIPRKSKESMSD
FISKMQEKYKRLITEIQDENGTRVINLNQPLRHFF
Run BLAST on NCBI

transcript from alignment at sc0000059:714254..714659

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005816 ID=TCONS_00005816|Name=TCONS_00005816|organism=Clytia hemisphaerica|type=transcript|length=406bp|location=Sequence derived from alignment at sc0000059:714254..714659 (Clytia hemisphaerica)
aaaaaaatgtctcaatGGTTGATTTAAATTTATTACTCGAGTCCCATTCT
CGTCTTGAATCTCTGTAATCAAACGTTTATATTTCTCTTGCATTTTACTT
ATAAAGTCGCTCATACTCTCCTTGCTTTTTCTTGGTATACATTCATTGTA
TCGTATTGTTTTCCCTCTGTCAGTGAAATGAAGATGGGTTTCTACGTATT
GACTGGCGGCTAACAGTGACTGCTCAGTGATATTGTAATCTGAAAGACTT
TTATCGTCTTCCAACCGCAAAGCTTTCTTTCCTTTCTTCAAAAAGACTCC
TTCATACTTTGAAGCATCGTTAAGCTTTCCTTGAATTTTATCTTTCAAGT
CTGCTACTTTATCtgaatttttcactgaaattctAAGTTTAACAGGACCA
GGAAAG

Coding sequence (CDS) from alignment at sc0000059:714254..714659

>TCONS_00005816 ID=TCONS_00005816|Name=TCONS_00005816|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0000059:714254..714659 (Clytia hemisphaerica)
aaaaaaatgtctcaatGGTTGATTTAAATTTATTACTCGAGTCCCATTCT
CGTCTTGAATCTCTGTAATCAAACGTTTATATTTCTCTTGCATTTTACTT
ATAAAGTCGCTCATACTCTCCTTGCTTTTTCTTGGTATACATTCATTGTA
TCGTATTGTTTTCCCTCTGTCAGTGAAATGAAGATGGGTTTCTACGTATT
GACTGGCGGCTAACAGTGACTGCTCAGTGATATTGTAATCTGAAAGACTT
TTATCGTCTTCCAACCGCAAAGCTTTCTTTCCTTTCTTCAAAAAGACTCC
TTCATACTTTGAAGCATCGTTAAGCTTTCCTTGAATTTTATCTTTCAAGT
CTGCTACTTTATCtgaatttttcactgaaattctAAGTTTAACAGGACCA
GGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003314XLOC_003314Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005816-exon-sc0000059-1491911889:714254..714659TCONS_00005816-exon-sc0000059-1491911889:714254..714659Clytia hemisphaericaexon
TCONS_00005816-exon-sc0000059-1510915933:714254..714659TCONS_00005816-exon-sc0000059-1510915933:714254..714659Clytia hemisphaericaexon
TCONS_00005816-exon-sc0000059-1575043694:714254..714659TCONS_00005816-exon-sc0000059-1575043694:714254..714659Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005816-proteinTCONS_00005816-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:714254..714659 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.18009	0	0.203907	0	0	0	0	0.327615	0.151758	0	0	0.239878	0.612218	0.784001	0.597477	1.09479	1.2438	0.399423	2.29544	2.93606	0	0	0	0	0.193355	0.277375	0.415034	0	0	0.212234
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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