TCONS_00005811 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005811
Unique NameTCONS_00005811
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length611

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005811 ID=TCONS_00005811|Name=TCONS_00005811|organism=Clytia hemisphaerica|type=transcript|length=611bp
aaactttttatcaTGATGCACGTACGCTACCACGCTGGTTGAATGGATAT
ACTAATCTGTTTTGGATTCTTTAATCTAGCTTAACATTTTTTGACAAATG
CTCCAGTTCGTCTTGTAAAACCAAGCTACAATCAAGGACTTATATGTTTG
AGAAAACCACTTGAAATTACTGATAAAACATTGGATAAATGTCCCCCTCC
CCCAAATAGCAATGTTCATTTTGCACGGGGTACTTTGAAGcctttgaaga
cttttttttgTAGGGTTTTTGCATCGATCATTACAGCCTCTAAAATTAGT
ACTTTGGTGTCGAAAACCCCTTTTTTGATGTCTTTTCACTCCAACGGGAA
ACCTCTTAAGACCTATAAAGCTAaatcttttcttcttcatttttcatctt
cattttctaaaatttttttaatttttttaatttctgaattatcgtttttt
ttttccttttacgAACATATACAACCAATAAATCCTTGATACTACTTACA
AGACGAACACAGAGAAATAGATAGCTCCTTCCCCCCGCTAGAGGCACTAG
TGGTACTAAGCTataaaatgaaataagaatttaaaaagaaaaaaattaca
ctcgttgaaaa
Run BLAST on NCBI

transcript from alignment at sc0000059:646813..647423

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005811 ID=TCONS_00005811|Name=TCONS_00005811|organism=Clytia hemisphaerica|type=transcript|length=611bp|location=Sequence derived from alignment at sc0000059:646813..647423 (Clytia hemisphaerica)
ttttcaacgagtgtaatttttttctttttaaattcttatttcattttatA
GCTTAGTACCACTAGTGCCTCTAGCGGGGGGAAGGAGCTATCTATTTCTC
TGTGTTCGTCTTGTAAGTAGTATCAAGGATTTATTGGTTGTATATGTTcg
taaaaggaaaaaaaaaacgataattcagaaattaaaaaaattaaaaaaat
tttagaaaatgaagatgaaaaatgaagaagaaaagattTAGCTTTATAGG
TCTTAAGAGGTTTCCCGTTGGAGTGAAAAGACATCAAAAAAGGGGTTTTC
GACACCAAAGTACTAATTTTAGAGGCTGTAATGATCGATGCAAAAACCCT
AcaaaaaaaagtcttcaaaggCTTCAAAGTACCCCGTGCAAAATGAACAT
TGCTATTTGGGGGAGGGGGACATTTATCCAATGTTTTATCAGTAATTTCA
AGTGGTTTTCTCAAACATATAAGTCCTTGATTGTAGCTTGGTTTTACAAG
ACGAACTGGAGCATTTGTCAAAAAATGTTAAGCTAGATTAAAGAATCCAA
AACAGATTAGTATATCCATTCAACCAGCGTGGTAGCGTACGTGCATCAtg
ataaaaagttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003309XLOC_003309Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005811-exon-sc0000059-1491911889:646813..647423TCONS_00005811-exon-sc0000059-1491911889:646813..647423Clytia hemisphaericaexon
TCONS_00005811-exon-sc0000059-1510915933:646813..647423TCONS_00005811-exon-sc0000059-1510915933:646813..647423Clytia hemisphaericaexon
TCONS_00005811-exon-sc0000059-1575043694:646813..647423TCONS_00005811-exon-sc0000059-1575043694:646813..647423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:646813..647423 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0860607	0	0.0977607	0	0.0940466	0	0.212446	0.148738	0	0	0.235104	1.11519	0.609547	0.350791	0.591568	0	0.135811	0	0	0.0853281	0	0	0	0.0947534	0.0845652	0	0	0.195908	0.0997997
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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