TCONS_00005805 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005805
Unique NameTCONS_00005805
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005805 ID=TCONS_00005805|Name=TCONS_00005805|organism=Clytia hemisphaerica|type=transcript|length=463bp
GTTGTACAGCATGCCTTGGGATCGAAAACATTCGGAAAAACGATTGTCCT
TGATACAATGATTTGGTCTCGGGGAATACGGATATCTCATCTTTCTTCTC
GGTGTTTTTTGTTTGTGATTTGGTTGACATGTCGTCTTCGCTGCATCCAC
TGGCCATTTTCTGCTTTCGATGATACCGGTAAAGAAAGaaaacgcattgt
tcattttcctttgaaaaagtgacgtcacaatgaattttcgaCGGACAACT
CTGGGCAGTGTAGACCCGTCGTCAtgcaaaaagaaccaattgcattgcgc
aaaaagctgtgtagcccgcttcgaaaaagtaaccggctAACAATATAGCG
TAATGAATGCTTACTTTCGACGTTTCGGTATactattttttagaattttt
atatcTGTGGACCAAAATTAATTAGAAGAATTGTTGAAAAGTGTTGTTAG
GCAGATATTAGGG
Run BLAST on NCBI

transcript from alignment at sc0000059:450652..451114

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005805 ID=TCONS_00005805|Name=TCONS_00005805|organism=Clytia hemisphaerica|type=transcript|length=463bp|location=Sequence derived from alignment at sc0000059:450652..451114 (Clytia hemisphaerica)
CCCTAATATCTGCCTAACAACACTTTTCAACAATTCTTCTAATTAATTTT
GGTCCACAgatataaaaattctaaaaaatagtATACCGAAACGTCGAAAG
TAAGCATTCATTACGCTATATTGTTagccggttactttttcgaagcgggc
tacacagctttttgcgcaatgcaattggttctttttgcaTGACGACGGGT
CTACACTGCCCAGAGTTGTCCGtcgaaaattcattgtgacgtcacttttt
caaaggaaaatgaacaatgcgttttCTTTCTTTACCGGTATCATCGAAAG
CAGAAAATGGCCAGTGGATGCAGCGAAGACGACATGTCAACCAAATCACA
AACAAAAAACACCGAGAAGAAAGATGAGATATCCGTATTCCCCGAGACCA
AATCATTGTATCAAGGACAATCGTTTTTCCGAATGTTTTCGATCCCAAGG
CATGCTGTACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003303XLOC_003303Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005805-exon-sc0000059-1491911889:450652..451114TCONS_00005805-exon-sc0000059-1491911889:450652..451114Clytia hemisphaericaexon
TCONS_00005805-exon-sc0000059-1510915933:450652..451114TCONS_00005805-exon-sc0000059-1510915933:450652..451114Clytia hemisphaericaexon
TCONS_00005805-exon-sc0000059-1575043694:450652..451114TCONS_00005805-exon-sc0000059-1575043694:450652..451114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:450652..451114 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.32938	1.34221	0.244317	0.164238	0.220124	0	0.380645	0	0.161581	0.120545	0.192102	0.110653	0.289382	0.428911	0.4464	0.113721	0	0.17325	0	0.48516	0	0.538996	0.1945	0.286175	0.533494	0.283922	0.529892	0.661225
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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