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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005803 ID=TCONS_00005803|Name=TCONS_00005803|organism=Clytia hemisphaerica|type=transcript|length=863bp
GGAGATCATACATTAAGTCGATATTTGACAAAGATAGCCCAAAAAGCTAG
ACAGTGTTTTTATTGTCTTCACGAATTCCATAGCAAGCCGGATCGGCAAT
CTACGAACTGAAAAGAACATTAACAGGAGTGGAGATTTGGATCGGGAGCC
TCTGGTCTCGAAACATGAGAAACGTTAGTACGGTAGGACTTAAGTTTCTT
CCAAAAGAAGGCCACCTTATAACGAAGAACGGTACTAGTTCTTCCTTAAC
AGGACATCTGGATACCATCTTTTCCCTACAAAATGCTGTACTGGTTGTAA
TACTTATCGCTTCGGTTACCGGTAATTCATACATCATCACCATGACTACC
TGGTCGCGATGGAAAAACAAACGTAAGGGTCGGAAATTAATCGATTATTT
AACGACACATCTTGCTGTAATGGATCTGTTACTGGTTATCATATCTGTAC
CTGAGATGTTGAGCCATAACATTTATTCCACTTTCAAGTTTGGTCCCATT
GGTTGTAAAGTCATTTATCCGTTATCCACTCACGCCGTCATTGCATCCGT
ACTAACGCTTCTTATCATCGCGTACGAACGTTATCAAGCGTCAAAAACAC
AGACTGTTATTATGCGTAGTAAGCATAAAACAATCATTTTATCGGCTGTC
AGTTTCGCTAGTATCGTTCTTGTCTGTCCTTACTCTTGGATCCTTACTTA
TGAGTCTAAATCTACGGTAGACGAAGCATTGTGTTTCGAAAGATGGGGCA
TGTCGTATCGAAGGATGTACACGTTGGTATTGTTTATTGTGCAGTACGCA
TGCCCAGTTCTGCTCATGAGTTATTATTACTACCACACGTGGAAGAATAT
AAAGACGTCTACA Run BLAST on NCBI protein sequence of TCONS_00005803-protein >TCONS_00005803-protein ID=TCONS_00005803-protein|Name=TCONS_00005803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MRNVSTVGLKFLPKEGHLITKNGTSSSLTGHLDTIFSLQNAVLVVILIAS
VTGNSYIITMTTWSRWKNKRKGRKLIDYLTTHLAVMDLLLVIISVPEMLS
HNIYSTFKFGPIGCKVIYPLSTHAVIASVLTLLIIAYERYQASKTQTVIM
RSKHKTIILSAVSFASIVLVCPYSWILTYESKSTVDEALCFERWGMSYRR
MYTLVLFIVQYACPVLLMSYYYYHTWKNIKTST Run BLAST on NCBI transcript from alignment at sc0000059:443312..444174 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005803 ID=TCONS_00005803|Name=TCONS_00005803|organism=Clytia hemisphaerica|type=transcript|length=863bp|location=Sequence derived from alignment at sc0000059:443312..444174 (Clytia hemisphaerica)
TGTAGACGTCTTTATATTCTTCCACGTGTGGTAGTAATAATAACTCATGA
GCAGAACTGGGCATGCGTACTGCACAATAAACAATACCAACGTGTACATC
CTTCGATACGACATGCCCCATCTTTCGAAACACAATGCTTCGTCTACCGT
AGATTTAGACTCATAAGTAAGGATCCAAGAGTAAGGACAGACAAGAACGA
TACTAGCGAAACTGACAGCCGATAAAATGATTGTTTTATGCTTACTACGC
ATAATAACAGTCTGTGTTTTTGACGCTTGATAACGTTCGTACGCGATGAT
AAGAAGCGTTAGTACGGATGCAATGACGGCGTGAGTGGATAACGGATAAA
TGACTTTACAACCAATGGGACCAAACTTGAAAGTGGAATAAATGTTATGG
CTCAACATCTCAGGTACAGATATGATAACCAGTAACAGATCCATTACAGC
AAGATGTGTCGTTAAATAATCGATTAATTTCCGACCCTTACGTTTGTTTT
TCCATCGCGACCAGGTAGTCATGGTGATGATGTATGAATTACCGGTAACC
GAAGCGATAAGTATTACAACCAGTACAGCATTTTGTAGGGAAAAGATGGT
ATCCAGATGTCCTGTTAAGGAAGAACTAGTACCGTTCTTCGTTATAAGGT
GGCCTTCTTTTGGAAGAAACTTAAGTCCTACCGTACTAACGTTTCTCATG
TTTCGAGACCAGAGGCTCCCGATCCAAATCTCCACTCCTGTTAATGTTCT
TTTCAGTTCGTAGATTGCCGATCCGGCTTGCTATGGAATTCGTGAAGACA
ATAAAAACACTGTCTAGCTTTTTGGGCTATCTTTGTCAAATATCGACTTA
ATGTATGATCTCC Coding sequence (CDS) from alignment at sc0000059:443312..444174 >TCONS_00005803 ID=TCONS_00005803|Name=TCONS_00005803|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at sc0000059:443312..444174 (Clytia hemisphaerica)
TGTAGACGTCTTTATATTCTTCCACGTGTGGTAGTAATAATAACTCATGA
GCAGAACTGGGCATGCGTACTGCACAATAAACAATACCAACGTGTACATC
CTTCGATACGACATGCCCCATCTTTCGAAACACAATGCTTCGTCTACCGT
AGATTTAGACTCATAAGTAAGGATCCAAGAGTAAGGACAGACAAGAACGA
TACTAGCGAAACTGACAGCCGATAAAATGATTGTTTTATGCTTACTACGC
ATAATAACAGTCTGTGTTTTTGACGCTTGATAACGTTCGTACGCGATGAT
AAGAAGCGTTAGTACGGATGCAATGACGGCGTGAGTGGATAACGGATAAA
TGACTTTACAACCAATGGGACCAAACTTGAAAGTGGAATAAATGTTATGG
CTCAACATCTCAGGTACAGATATGATAACCAGTAACAGATCCATTACAGC
AAGATGTGTCGTTAAATAATCGATTAATTTCCGACCCTTACGTTTGTTTT
TCCATCGCGACCAGGTAGTCATGGTGATGATGTATGAATTACCGGTAACC
GAAGCGATAAGTATTACAACCAGTACAGCATTTTGTAGGGAAAAGATGGT
ATCCAGATGTCCTGTTAAGGAAGAACTAGTACCGTTCTTCGTTATAAGGT
GGCCTTCTTTTGGAAGAAACTTAAGTCCTACCGTACTAACGTTTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005803-exon-sc0000059-1491911889:443312..444174 | TCONS_00005803-exon-sc0000059-1491911889:443312..444174 | Clytia hemisphaerica | exon |
| TCONS_00005803-exon-sc0000059-1510915933:443312..444174 | TCONS_00005803-exon-sc0000059-1510915933:443312..444174 | Clytia hemisphaerica | exon |
| TCONS_00005803-exon-sc0000059-1575043694:443312..444174 | TCONS_00005803-exon-sc0000059-1575043694:443312..444174 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:443312..444174 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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