TCONS_00005802 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005802
Unique NameTCONS_00005802
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005802 ID=TCONS_00005802|Name=TCONS_00005802|organism=Clytia hemisphaerica|type=transcript|length=1479bp
ATTTGAATTCTCTTTCGTTTGAAGTTAGTACGCTCCAAGAGAATTGTTAT
TGAATTGTTATAATATTGTGAAAGAAAATTGGAAATACAAGATGGTTGCG
TGTAGCAAACCAATGGTAACAGAATGTTATCTACAGTCAATGCTGGAATT
TCAgaaattggttttcaaaatGGAAAATCTTCATTTCCTGATGAGTTCCG
GTTCAGCTGATTTTGCGATGATCAGTGAAAATATGGATGGAACAGTCGAG
TTCGGAAAAGTGTTCccaaatattttgatgaaagaCATGATCCAATATCG
TATGTATCGTCAACCCAATGTTCCGTTCCTCGTTCAAAACAACTTGAAGA
ACTGTTTGAAACATAATACTCAGCCCTTTTTCACTATGAAGAAACACACT
TCAAACCGATACCACCCTTATCTTGACGAACTTAAAAAACATCGAATGAA
CAGAAACAAATTTCCGAAATCGGACAAGCACTTAGAATCAAAGATGATTA
AACATAAGCCGTATTATGAACCAAAACAGTTCCTTGAGTTTCTGGATGAC
ATGAACGATAATCAAGATTCGGTGTACAAAGGACCTTCGCCTGAGATCGA
TCATTTGTCGTTGGCATTCGGTGGATTGTCGGTGTCTGATGATAAACCAT
CCAATCAAATCTCAGTTACCACTACTGTTAAAGAACGCCCTGGTCTCTCA
AATATATCAAAggtgaaaatgaataaacccTCCGAAGAAAAATCAGTTAC
CACAGCTGTCAAACCACCCTCCGGTCATTCAGTTGTACCAACggtgaaaa
tgaataaaccaCCCGAACAAAAGTCGGTTACCACTCCCGTTAAAGAACCA
GCGGTGAAAATCTGTGAAAGTTAACCTTCTTCTGCTTCTTCGAGAAAAAG
ACTTGTTTCTTGTATAATGATCTATGAAGATGAACTCGTCCCTCGTTCAG
ATACAAGCCGTGAAAGCGTTCCAACCTCGACCGCCGCTTCCGATGAGGAA
ATTCCGATTTCCAATCTTCGACAAGATGCGCAAAAGAAACGAAAATGGGG
AAATCAACCTGAAAAAGAAGATATCAAGAAATGGAAAATGACTGAAGAAA
AAACCAACATAAGTGACCAAAGAATCGTGGTAAGGAAGACCTTTGGCCGA
AAAATGATAATAAAGAGCCAACCCAGTGCACAACGAAAATTGGGTGAATC
CAAAAACACTAATGATCGAAAAGCGGACATCAAAAAGGTTTTCATTAGAA
AGCAAAATGGAAAATACAACAACAAAGGCGAAAACAACCGTGACCGAAAA
AAGAATACAAGAACTAACAACAGTGTGAAAAGACAACGTGACTATCCCGA
GGATGAGCTTGCTTCACCATTCTGGAAGAAATCGCGCAATTCCAACAGAA
CAGACCGATTCCGTTAGATTATCACTAGAAATATCCATTGAATAGAGTCa
ccttttttgtcaatttattttatctaaga
Run BLAST on NCBI

protein sequence of TCONS_00005802-protein

>TCONS_00005802-protein ID=TCONS_00005802-protein|Name=TCONS_00005802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MVACSKPMVTECYLQSMLEFQKLVFKMENLHFLMSSGSADFAMISENMDG
TVEFGKVFPNILMKDMIQYRMYRQPNVPFLVQNNLKNCLKHNTQPFFTMK
KHTSNRYHPYLDELKKHRMNRNKFPKSDKHLESKMIKHKPYYEPKQFLEF
LDDMNDNQDSVYKGPSPEIDHLSLAFGGLSVSDDKPSNQISVTTTVKERP
GLSNISKVKMNKPSEEKSVTTAVKPPSGHSVVPTVKMNKPPEQKSVTTPV
KEPAVKICES
Run BLAST on NCBI

transcript from alignment at sc0000059:391140..392618

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005802 ID=TCONS_00005802|Name=TCONS_00005802|organism=Clytia hemisphaerica|type=transcript|length=1479bp|location=Sequence derived from alignment at sc0000059:391140..392618 (Clytia hemisphaerica)
tcttagataaaataaattgacaaaaaaggtGACTCTATTCAATGGATATT TCTAGTGATAATCTAACGGAATCGGTCTGTTCTGTTGGAATTGCGCGATT TCTTCCAGAATGGTGAAGCAAGCTCATCCTCGGGATAGTCACGTTGTCTT TTCACACTGTTGTTAGTTCTTGTATTCTTTTTTCGGTCACGGTTGTTTTC GCCTTTGTTGTTGTATTTTCCATTTTGCTTTCTAATGAAAACCTTTTTGA TGTCCGCTTTTCGATCATTAGTGTTTTTGGATTCACCCAATTTTCGTTGT GCACTGGGTTGGCTCTTTATTATCATTTTTCGGCCAAAGGTCTTCCTTAC CACGATTCTTTGGTCACTTATGTTGGTTTTTTCTTCAGTCATTTTCCATT TCTTGATATCTTCTTTTTCAGGTTGATTTCCCCATTTTCGTTTCTTTTGC GCATCTTGTCGAAGATTGGAAATCGGAATTTCCTCATCGGAAGCGGCGGT CGAGGTTGGAACGCTTTCACGGCTTGTATCTGAACGAGGGACGAGTTCAT CTTCATAGATCATTATACAAGAAACAAGTCTTTTTCTCGAAGAAGCAGAA GAAGGTTAACTTTCACAGATTTTCACCGCTGGTTCTTTAACGGGAGTGGT AACCGACTTTTGTTCGGGtggtttattcattttcaccGTTGGTACAACTG AATGACCGGAGGGTGGTTTGACAGCTGTGGTAACTGATTTTTCTTCGGAg ggtttattcattttcaccTTTGATATATTTGAGAGACCAGGGCGTTCTTT AACAGTAGTGGTAACTGAGATTTGATTGGATGGTTTATCATCAGACACCG ACAATCCACCGAATGCCAACGACAAATGATCGATCTCAGGCGAAGGTCCT TTGTACACCGAATCTTGATTATCGTTCATGTCATCCAGAAACTCAAGGAA CTGTTTTGGTTCATAATACGGCTTATGTTTAATCATCTTTGATTCTAAGT GCTTGTCCGATTTCGGAAATTTGTTTCTGTTCATTCGATGTTTTTTAAGT TCGTCAAGATAAGGGTGGTATCGGTTTGAAGTGTGTTTCTTCATAGTGAA AAAGGGCTGAGTATTATGTTTCAAACAGTTCTTCAAGTTGTTTTGAACGA GGAACGGAACATTGGGTTGACGATACATACGATATTGGATCATGtctttc atcaaaatatttggGAACACTTTTCCGAACTCGACTGTTCCATCCATATT TTCACTGATCATCGCAAAATCAGCTGAACCGGAACTCATCAGGAAATGAA GATTTTCCattttgaaaaccaatttcTGAAATTCCAGCATTGACTGTAGA TAACATTCTGTTACCATTGGTTTGCTACACGCAACCATCTTGTATTTCCA ATTTTCTTTCACAATATTATAACAATTCAATAACAATTCTCTTGGAGCGT ACTAACTTCAAACGAAAGAGAATTCAAAT

Coding sequence (CDS) from alignment at sc0000059:391140..392618

>TCONS_00005802 ID=TCONS_00005802|Name=TCONS_00005802|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at sc0000059:391140..392618 (Clytia hemisphaerica)
TTAACTTTCACAGATTTTCACCGCTGGTTCTTTAACGGGAGTGGTAACCG
ACTTTTGTTCGGGtggtttattcattttcaccGTTGGTACAACTGAATGA
CCGGAGGGTGGTTTGACAGCTGTGGTAACTGATTTTTCTTCGGAgggttt
attcattttcaccTTTGATATATTTGAGAGACCAGGGCGTTCTTTAACAG
TAGTGGTAACTGAGATTTGATTGGATGGTTTATCATCAGACACCGACAAT
CCACCGAATGCCAACGACAAATGATCGATCTCAGGCGAAGGTCCTTTGTA
CACCGAATCTTGATTATCGTTCATGTCATCCAGAAACTCAAGGAACTGTT
TTGGTTCATAATACGGCTTATGTTTAATCATCTTTGATTCTAAGTGCTTG
TCCGATTTCGGAAATTTGTTTCTGTTCATTCGATGTTTTTTAAGTTCGTC
AAGATAAGGGTGGTATCGGTTTGAAGTGTGTTTCTTCATAGTGAAAAAGG
GCTGAGTATTATGTTTCAAACAGTTCTTCAAGTTGTTTTGAACGAGGAAC
GGAACATTGGGTTGACGATACATACGATATTGGATCATGtctttcatcaa
aatatttggGAACACTTTTCCGAACTCGACTGTTCCATCCATATTTTCAC
TGATCATCGCAAAATCAGCTGAACCGGAACTCATCAGGAAATGAAGATTT
TCCattttgaaaaccaatttcTGAAATTCCAGCATTGACTGTAGATAACA
TTCTGTTACCATTGGTTTGCTACACGCAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003300XLOC_003300Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005802-proteinTCONS_00005802-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005802-exon-sc0000059-1491911889:391140..392618TCONS_00005802-exon-sc0000059-1491911889:391140..392618Clytia hemisphaericaexon
TCONS_00005802-exon-sc0000059-1510915933:391140..392618TCONS_00005802-exon-sc0000059-1510915933:391140..392618Clytia hemisphaericaexon
TCONS_00005802-exon-sc0000059-1575043694:391140..392618TCONS_00005802-exon-sc0000059-1575043694:391140..392618Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:391140..392618 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.307288 0.108965 0.379556 0.58795 0.33905 0.0595382 0.107745 0.10087 0 0.116635 0 0.0186047 0.0185788 0.0578829 0 0 0.0419417 0.0644834 0 0 0.0270094 0.0395227 0 0.0582398 0.0299928 0.160607 0 0 0 0.0315901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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