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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005802 ID=TCONS_00005802|Name=TCONS_00005802|organism=Clytia hemisphaerica|type=transcript|length=1479bp
ATTTGAATTCTCTTTCGTTTGAAGTTAGTACGCTCCAAGAGAATTGTTAT
TGAATTGTTATAATATTGTGAAAGAAAATTGGAAATACAAGATGGTTGCG
TGTAGCAAACCAATGGTAACAGAATGTTATCTACAGTCAATGCTGGAATT
TCAgaaattggttttcaaaatGGAAAATCTTCATTTCCTGATGAGTTCCG
GTTCAGCTGATTTTGCGATGATCAGTGAAAATATGGATGGAACAGTCGAG
TTCGGAAAAGTGTTCccaaatattttgatgaaagaCATGATCCAATATCG
TATGTATCGTCAACCCAATGTTCCGTTCCTCGTTCAAAACAACTTGAAGA
ACTGTTTGAAACATAATACTCAGCCCTTTTTCACTATGAAGAAACACACT
TCAAACCGATACCACCCTTATCTTGACGAACTTAAAAAACATCGAATGAA
CAGAAACAAATTTCCGAAATCGGACAAGCACTTAGAATCAAAGATGATTA
AACATAAGCCGTATTATGAACCAAAACAGTTCCTTGAGTTTCTGGATGAC
ATGAACGATAATCAAGATTCGGTGTACAAAGGACCTTCGCCTGAGATCGA
TCATTTGTCGTTGGCATTCGGTGGATTGTCGGTGTCTGATGATAAACCAT
CCAATCAAATCTCAGTTACCACTACTGTTAAAGAACGCCCTGGTCTCTCA
AATATATCAAAggtgaaaatgaataaacccTCCGAAGAAAAATCAGTTAC
CACAGCTGTCAAACCACCCTCCGGTCATTCAGTTGTACCAACggtgaaaa
tgaataaaccaCCCGAACAAAAGTCGGTTACCACTCCCGTTAAAGAACCA
GCGGTGAAAATCTGTGAAAGTTAACCTTCTTCTGCTTCTTCGAGAAAAAG
ACTTGTTTCTTGTATAATGATCTATGAAGATGAACTCGTCCCTCGTTCAG
ATACAAGCCGTGAAAGCGTTCCAACCTCGACCGCCGCTTCCGATGAGGAA
ATTCCGATTTCCAATCTTCGACAAGATGCGCAAAAGAAACGAAAATGGGG
AAATCAACCTGAAAAAGAAGATATCAAGAAATGGAAAATGACTGAAGAAA
AAACCAACATAAGTGACCAAAGAATCGTGGTAAGGAAGACCTTTGGCCGA
AAAATGATAATAAAGAGCCAACCCAGTGCACAACGAAAATTGGGTGAATC
CAAAAACACTAATGATCGAAAAGCGGACATCAAAAAGGTTTTCATTAGAA
AGCAAAATGGAAAATACAACAACAAAGGCGAAAACAACCGTGACCGAAAA
AAGAATACAAGAACTAACAACAGTGTGAAAAGACAACGTGACTATCCCGA
GGATGAGCTTGCTTCACCATTCTGGAAGAAATCGCGCAATTCCAACAGAA
CAGACCGATTCCGTTAGATTATCACTAGAAATATCCATTGAATAGAGTCa
ccttttttgtcaatttattttatctaaga Run BLAST on NCBI protein sequence of TCONS_00005802-protein >TCONS_00005802-protein ID=TCONS_00005802-protein|Name=TCONS_00005802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MVACSKPMVTECYLQSMLEFQKLVFKMENLHFLMSSGSADFAMISENMDG
TVEFGKVFPNILMKDMIQYRMYRQPNVPFLVQNNLKNCLKHNTQPFFTMK
KHTSNRYHPYLDELKKHRMNRNKFPKSDKHLESKMIKHKPYYEPKQFLEF
LDDMNDNQDSVYKGPSPEIDHLSLAFGGLSVSDDKPSNQISVTTTVKERP
GLSNISKVKMNKPSEEKSVTTAVKPPSGHSVVPTVKMNKPPEQKSVTTPV
KEPAVKICES Run BLAST on NCBI transcript from alignment at sc0000059:391140..392618 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005802 ID=TCONS_00005802|Name=TCONS_00005802|organism=Clytia hemisphaerica|type=transcript|length=1479bp|location=Sequence derived from alignment at sc0000059:391140..392618 (Clytia hemisphaerica)
tcttagataaaataaattgacaaaaaaggtGACTCTATTCAATGGATATT
TCTAGTGATAATCTAACGGAATCGGTCTGTTCTGTTGGAATTGCGCGATT
TCTTCCAGAATGGTGAAGCAAGCTCATCCTCGGGATAGTCACGTTGTCTT
TTCACACTGTTGTTAGTTCTTGTATTCTTTTTTCGGTCACGGTTGTTTTC
GCCTTTGTTGTTGTATTTTCCATTTTGCTTTCTAATGAAAACCTTTTTGA
TGTCCGCTTTTCGATCATTAGTGTTTTTGGATTCACCCAATTTTCGTTGT
GCACTGGGTTGGCTCTTTATTATCATTTTTCGGCCAAAGGTCTTCCTTAC
CACGATTCTTTGGTCACTTATGTTGGTTTTTTCTTCAGTCATTTTCCATT
TCTTGATATCTTCTTTTTCAGGTTGATTTCCCCATTTTCGTTTCTTTTGC
GCATCTTGTCGAAGATTGGAAATCGGAATTTCCTCATCGGAAGCGGCGGT
CGAGGTTGGAACGCTTTCACGGCTTGTATCTGAACGAGGGACGAGTTCAT
CTTCATAGATCATTATACAAGAAACAAGTCTTTTTCTCGAAGAAGCAGAA
GAAGGTTAACTTTCACAGATTTTCACCGCTGGTTCTTTAACGGGAGTGGT
AACCGACTTTTGTTCGGGtggtttattcattttcaccGTTGGTACAACTG
AATGACCGGAGGGTGGTTTGACAGCTGTGGTAACTGATTTTTCTTCGGAg
ggtttattcattttcaccTTTGATATATTTGAGAGACCAGGGCGTTCTTT
AACAGTAGTGGTAACTGAGATTTGATTGGATGGTTTATCATCAGACACCG
ACAATCCACCGAATGCCAACGACAAATGATCGATCTCAGGCGAAGGTCCT
TTGTACACCGAATCTTGATTATCGTTCATGTCATCCAGAAACTCAAGGAA
CTGTTTTGGTTCATAATACGGCTTATGTTTAATCATCTTTGATTCTAAGT
GCTTGTCCGATTTCGGAAATTTGTTTCTGTTCATTCGATGTTTTTTAAGT
TCGTCAAGATAAGGGTGGTATCGGTTTGAAGTGTGTTTCTTCATAGTGAA
AAAGGGCTGAGTATTATGTTTCAAACAGTTCTTCAAGTTGTTTTGAACGA
GGAACGGAACATTGGGTTGACGATACATACGATATTGGATCATGtctttc
atcaaaatatttggGAACACTTTTCCGAACTCGACTGTTCCATCCATATT
TTCACTGATCATCGCAAAATCAGCTGAACCGGAACTCATCAGGAAATGAA
GATTTTCCattttgaaaaccaatttcTGAAATTCCAGCATTGACTGTAGA
TAACATTCTGTTACCATTGGTTTGCTACACGCAACCATCTTGTATTTCCA
ATTTTCTTTCACAATATTATAACAATTCAATAACAATTCTCTTGGAGCGT
ACTAACTTCAAACGAAAGAGAATTCAAAT Coding sequence (CDS) from alignment at sc0000059:391140..392618 >TCONS_00005802 ID=TCONS_00005802|Name=TCONS_00005802|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at sc0000059:391140..392618 (Clytia hemisphaerica)
TTAACTTTCACAGATTTTCACCGCTGGTTCTTTAACGGGAGTGGTAACCG
ACTTTTGTTCGGGtggtttattcattttcaccGTTGGTACAACTGAATGA
CCGGAGGGTGGTTTGACAGCTGTGGTAACTGATTTTTCTTCGGAgggttt
attcattttcaccTTTGATATATTTGAGAGACCAGGGCGTTCTTTAACAG
TAGTGGTAACTGAGATTTGATTGGATGGTTTATCATCAGACACCGACAAT
CCACCGAATGCCAACGACAAATGATCGATCTCAGGCGAAGGTCCTTTGTA
CACCGAATCTTGATTATCGTTCATGTCATCCAGAAACTCAAGGAACTGTT
TTGGTTCATAATACGGCTTATGTTTAATCATCTTTGATTCTAAGTGCTTG
TCCGATTTCGGAAATTTGTTTCTGTTCATTCGATGTTTTTTAAGTTCGTC
AAGATAAGGGTGGTATCGGTTTGAAGTGTGTTTCTTCATAGTGAAAAAGG
GCTGAGTATTATGTTTCAAACAGTTCTTCAAGTTGTTTTGAACGAGGAAC
GGAACATTGGGTTGACGATACATACGATATTGGATCATGtctttcatcaa
aatatttggGAACACTTTTCCGAACTCGACTGTTCCATCCATATTTTCAC
TGATCATCGCAAAATCAGCTGAACCGGAACTCATCAGGAAATGAAGATTT
TCCattttgaaaaccaatttcTGAAATTCCAGCATTGACTGTAGATAACA
TTCTGTTACCATTGGTTTGCTACACGCAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005802-exon-sc0000059-1491911889:391140..392618 | TCONS_00005802-exon-sc0000059-1491911889:391140..392618 | Clytia hemisphaerica | exon |
| TCONS_00005802-exon-sc0000059-1510915933:391140..392618 | TCONS_00005802-exon-sc0000059-1510915933:391140..392618 | Clytia hemisphaerica | exon |
| TCONS_00005802-exon-sc0000059-1575043694:391140..392618 | TCONS_00005802-exon-sc0000059-1575043694:391140..392618 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:391140..392618 . |
Blast
The following BLAST results are available for this feature:
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