TCONS_00005775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005775
Unique NameTCONS_00005775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005775 ID=TCONS_00005775|Name=TCONS_00005775|organism=Clytia hemisphaerica|type=transcript|length=348bp
GGTACATATGGAGGACTTTAAAGGACTCAAAAAATTCCCAAGGTATCATT
GAATAAATGATGAGATGTATCCAAAACAATCCGAACAAGCCAAACCACCA
TTATGTTGCCTTTTCCAGAACCATCAAGgGACACGATTCGATGAGATATA
TCCAAATTAGTCTATACAAGCCAATCCACCATTATGTTGTCTTTTCTACA
GCCATCAAGGTATCATTGAATAAATGATGAGATGTATCCAAAACAATCCG
AACAAGCCAAACCACCATTATGTTGCCTTTTCCAGAACCATCAAGgGACA
ATCGATTCGATGAGATATATCCAAATTAGTCTATACAAGCCAATCCAC
Run BLAST on NCBI

transcript from alignment at sc0000059:509835..519763-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005775 ID=TCONS_00005775|Name=TCONS_00005775|organism=Clytia hemisphaerica|type=transcript|length=9929bp|location=Sequence derived from alignment at sc0000059:509835..519763- (Clytia hemisphaerica)
GGTACATATGGAGGACTTTAAAGGACTCAAAAAATTCCCAAGGTTTGCAC
CTACACCTTAAAAGTCGACGGAATAATGTGTTACCTAGTAATTACCTGGC
GACGTATTAAGTCAAATTATGATCCTCTTCATACTGAACTCTCAACTGCA
CCTAAATTTCGATCACTTTTTGCTCTTGAAAACTTTTCCAGGGTGATCAA
AAATCGTTTCGATACTTGAATATCGAGGCCGTTTTCTTTTCTTTCTTTAT
TTCCGATCCCATCCTATCGCCACTCGACACGGCCTCTCACTCGAGCTAGT
NCGCAAGGCCATCGTCTTTTCTTTACTTCCGATCCCATCCTATCGCCCTT
CTACACGGCCTCTCACTCGAGCTAGTGTGTTTTGGGTTTGTACATAATTT
TCCCTTTTCATCGTTTTCAGGTATCATTGAATAAATGATGAGATGTATCC
AAAACAATCCGAACAAGCCAAACCACCATTATGTTGCCTTTTCCAGAACC
ATCAAGGTATTACGACTGCGATTTTCAGTTTTATGGCAATAAAAAGCATG
TAGACACGAATTTTATAAAGAAATTGTGAGAGGTTCTAATATTTCAAACC
GTTAAAAAGATACTACGAACCTTCAGAATTTCGTTCAACTTTACTTTGTC
AACCATACACCAGCCAGGGTACATATGGATGACTTTAAAGGATTCTAAAA
ATTCCCAAGATTAGCAGCACCTACNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCTGACAAAACAATGCAAATTCATATGTTCA
TTATATTTCCATTTGATCACAGGCTTTTCGGCAGTACATTTATCGCTGAT
TCTTTGCCATTAGCCTCCGTCTCAGAACGCGGTCAGAAAATTTTGCGGAT
AATTTCACAGCGAAAATGCATCTAGTGAAATGTGAGTAATGTATCATAAT
TCAAGTCGACTGACATAATTATCCACATAATACATGTTACAAGTTCTGCC
TACGGATTCACAAGCTCGGCTATAATAAAACTATTACATGTTAGTAGCAG
ACCCGACTGACCAATGTTATGTAGCAGGTTGAAACATGAGTTTCTACTGG
AAAGATGCAGTTTGTTTTCAAGTTAAATCTTCAAAATAAAGCAAAATGTG
TGGGTTTCTTTACTTTCAAACAACCTACCAATAGTTTTGGAACACTCCAT
AATAAAGGAAGATGGCTCTTCTTGTGGATTGGCTTTCTGATACCCCATAT
AAACACGATGTGACATGAAAGTGAAGAGACACGATTTGTTGCTTTTTGTT
TGATTTGTTGACTCATATATCTCATGGCTAGCGGGATAGCAAATGACTTT
TCATGTATTGCTTGGTTCTACATATGACACCTCTAACTTTGAACACCTCC
AGAATGTTGAAAAAAGCATTTCACGAGATAAGTTTCAATTATAATTTTCA
TGGAAATTTTTAATCGACAGATTTGGCTTGGCGTCAGTTTTGTTTGGTTG
ATGTTTGGTATCGTGATCATTAAAAGCAATGAAATGCCACAGTCACTCTA
CACGTGATGCCTCCAGCCATGATTGGTATCAGAATGTTGGAAAAAAACAT
TTTACGAGAAATTGTTGATAGAAATTATATTGACTTGTTTTTACAATTTT
GGCGGTGTGGGTTTTGTTGGTTGATAATGTTTACACCGTGGGATCCTGGG
ATAGTTTTCAAAAAACTGTTATATTGATTGTTGTTTGTTGGAATTGGGTA
CCAAAAAAAAAGAGGACCTTATAAATACTTTATTTTTCTCATGAATCGAA
AAAACCGTGTGGATAGTATGTCTTGTAGTAACCAATGCAGTGTCTGTTTT
CAAATTTTGAAAGCTCTACCTATACCTACTGAATTGAAGCTCTGACTAGC
TCTGAGCCATGTTTTATTCTTTGTTGCTATTAAAGATAGATTTTTAAATT
GTCGTAATGTAAATTTATGGTAAAGTTTTAGTTTTTGAGTTTAGTTTNNN
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CAGGAATGAACTTTCATGACGTTATTTTTAAGCGTTCCTCACTCGTTCCT
CGAACGTTCCTCAGGAAAAGAGATGTTTCAACTTTGTTTCAGCATTCCTC
GTCTATTCCTCGAACGTCCCTGAGGAAAGGACATTTTATGACGTTATTTT
TAACCGTTGCTCACTCGTTCCTCGAACGTTCCTCAGGAATGGAAATATTT
CCTTTTCACTTTATTGTTCCTCATGAGCCGAAAAATCTTTTTTGCAAAAA
TCTGCTTTAGCCATCTTTTACCTAGGCCTCAAAACACCATCTTTTACCTA
CGATAATACCCTACTTTTGTGCAAAAAATCATGATCCAGTCGGGCTCTGT
CATATTTGATGGTTTATAGTCATGCACCTTTGTGCCAATATCAGAAACTT
TGAATGGGTCAATCTTGAGAAAAGCTGGTAACTAACGTTGTCCGTGGGTT
AATTTATAGGACCTCCATCGGGTTAAGTTCAAAAAGCCTGTAGGGATTTC
CAATGAACTTAAAACACAGGGTGAAAAAAAAAAACCCTAGTTGTTTGTGA
GCTTCCGTTACTAATGTGTTCTAAAGGACAAAAGTATTTCTCTAGCCCTT
TCTTTCATAAAAGTTTTTGATATTGAATATCTTATCCTTGAAAATGTATT
AACAGCTCCAAAAGTGTTTTTTCCTGAGAAACAAATGAGGAACTCTTTTA
AATAACGTCATGAAAGCCCATTCTTCAGGAACGTGTGAGGAAAAGATGAT
AAACGATAAAGTGAAGAAGAAATATCTCGCTCGAGTGAGGAGCGCTTAAA
AGTAACGTCATCCATTCCTGAGGAACGTTCGAGGAAGTAGTAAGGAACGC
TTAAAAATAACGTCATGAAAGTCTATTCCTGAGGAACGTTCGAGGAACGA
GTGAGGAACGCTTGAAAATAACGTCATGAAAGTCCGTCAGAAATGTTCAT
TCCTGAGGAACGAGTGAGGAACGCTTGAAAATAACGTCATGAAAGTCTAT
TCCTGAGGAACGTTCGAGGAACGAGTGAGGAACGTTCGAGGAACGAGTGA
GGAACGCTTGAAAATAATGTCATGAAAGTCCATTCCTGAGGAACGTTCGA
GGAACGAGTGAGGAACACCTAAAAATTACGTCAGAAATGTCTATTCCTGA
GGAACGTTCGAGGAATAGATGAGGAATGCTGAAACAAAGTTGAAATNATT
CATGTAATTCCCTCAACGTACCTACTTTTGTCTTCGCTTCGCAGATAGCG
ACGATGTGAGGCTTTTCCTCATGGGCCATGGACTGTAGCTCCTTAATTTT
AAATGAAGTCAACTGATCGGGATTTGTATACAGAACTTTCATATCTTTGA
TTAATTTTTCTTTTTGAGCAAAGTTGGCTTCTGTTGGTCTATGATATTTG
TCTCCGTTAGGTTGTTCGAGAAGGAGACATTCTTCATTGTTGGTGACTGG
TTGGGGGTTGACGGTTTTCTGAGTGGTATCTTCTTGACAGTGAAGCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNACATTTTAAAAAAACCACAAGTAGTTTTTAAGCGCCTT
AACTTAGGTTTGGGAAGTAAAGTTTTATCTCTGAGTTTTAACATAAGACT
TAAGACTGAGGATTGTAAAGCTTGCGAATAGTCCGACTAGGCTGAGAATA
TACCTAATTTTGGACGATCTTTTCTTCGCAAAGGCTTTTCCAGGATGTTA
AAAATCCATTTTGATACTTGAATGTTGCGACACCGTTGTCTTTTCTTTCT
ATTTTTCCCGATTCCATCCTCTATTCACTCAACACGGCCTCTCACTGCAG
CTAGTGTGGGTTGAACTTGTACATAATTTTCCATTCTCAATTTTTTCAGG
GACACGATTCGATGAGATATATCCAAATTAGTCTATACAAGCCAATCCAC
CATTATGTTGTCTTTTCTACAGCCATCAAGGTATTATTTTAATGCCATTT
TCAATTCCACTCAAATAAAAATCTGACAAAACAATGCAAATTCATATATT
CATTATATTTCCATTTTCCATAACAAGCCGATAATTTTAAAAACCATAAA
ACAAAACAAAGTCCGAAAAGATTCATTCTGACATCAAAAATCTTGAAGTA
ACAGACGAAGTGATCTCATGTAAAAATGCTATATTTCGTATTCTATCTAA
TACATCATTCAGGCAAAAAGTAAGTACAAAGAATAAAAGCTACTATTTAT
AAAAGTCATGGTAAAAAAAAATCGTAAAAATGTTATCAATAAAAAGGCAA
TTAAAATGTAAAATTGGCTAAGTATAATGATCCCAAGTGACTAATGATGA
AAAGAAACTAATCTCGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAAATA
TTATTTGACGTCAGAAATTTGATTGTGACGACAATTTTTTTGAAATATGC
AAAAAAGTAAGGGTCAAAAGTGATGTGCCCCCATATAGACGAAGAGTTTT
TTAAGAAGTAGGGAGAGATTGTAATGTTTCAATTTTTCAACAGTTTCTAC
AAACCATGGGAATTTTGGTCAACTTTATTTTGTCAACCATACACCAGCCA
GGGTACATATGGAGGACTTTAAAGGACTCAAAAAATTCCCAAGATTTGCA
CCTACACCTTAAAAGTCGACGGAATAATGTGTTACCTAGCAATTACCTGG
CGACGTAATAAGTCAAATTCTGATCCTCTTCATACTGAACTCTCAACTGC
ACCTAAATTTCGATCACTTTTTGTTCTTGAAAGCTTTTCCAGGGTGATCA
AAAACCGTTTTGATACTTGAATTGCAAGGCCGTTGTCTTTTCTTTCTTTA
TTTCCGATCCCATCCTATCGCCACTCGACACGGCTTCTCACTCGAGCTAG
TGTGTTTTGGGTTTGTACATAATTTTCCCTTTTCGTCGTTTTCAGGTATC
ATTGAATAAATGATGAGATGTATCCAAAACAATCCGAACAAGCCAAACCA
CCATTATGTTGCCTTTTCCAGAACCATCAAGGTATTACGAGTGCGATTTT
CAGTTTTATGGCAATAAAAAGCATGTAGACACAGATTTTATAAAGAAATT
GTGAGAAGTTCTAATGTTTCAAACCCTTAAAAAGTTACTACGAACCTTGG
GAATTTCGTTCAACTTTACTTTGTCAACCATACACCAGCCATGGTACACA
TGGATGACTTTAAAGGATTCTAAAAATTCCCAAGATTAGCAGCACCTACA
ATCAATGGCAGACTATTTGGCACAATAGGAGTTTCCCTCCGCATTTTAAA
AAAACCACAAGTAGTTTTTAAGCGCCTTAACTTAGGTTTGGGAAGTAAAG
TTTTATCTCTGAGTTTTAACATAAGACTGAAGACTGAGGATTGTAAAGCT
TGCGAATAGTCCGACTAGGCTGAGAATATACCTAATTTTGGACGATCTTT
TCTTCGCAAAGGCTTTTCCAGGATGATAAAAATCCATTTTGATACTTGAA
TGTTGCGACACCGTTGTCTTTTCTTTCTATTTTCCCGATTTCATCCTCTA
TTCACTCAACACGGCCTCTCACTGCAGCTTGTGTGGGTTGAACTTGTACA
TAATTTTCCATTCTCAATTTTTTCAGGGACAATCGATTCGATGAGATATA
TCCAAATTAGTCTATACAAGCCAATCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003277XLOC_003277Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005775-exon-sc0000059-1575043694:519722..519763TCONS_00005775-exon-sc0000059-1575043694:519722..519763Clytia hemisphaericaexon
TCONS_00005775-exon-sc0000059-1575043694:519258..519343TCONS_00005775-exon-sc0000059-1575043694:519258..519343Clytia hemisphaericaexon
TCONS_00005775-exon-sc0000059-1575043694:512534..512614TCONS_00005775-exon-sc0000059-1575043694:512534..512614Clytia hemisphaericaexon
TCONS_00005775-exon-sc0000059-1575043694:510483..510568TCONS_00005775-exon-sc0000059-1575043694:510483..510568Clytia hemisphaericaexon
TCONS_00005775-exon-sc0000059-1575043694:509835..509887TCONS_00005775-exon-sc0000059-1575043694:509835..509887Clytia hemisphaericaexon
TCONS_00005775-exon-sc0000059-1510915933:519722..519763TCONS_00005775-exon-sc0000059-1510915933:519722..519763Clytia hemisphaericaexon
TCONS_00005775-exon-sc0000059-1510915933:519258..519343TCONS_00005775-exon-sc0000059-1510915933:519258..519343Clytia hemisphaericaexon
TCONS_00005775-exon-sc0000059-1510915933:512534..512614TCONS_00005775-exon-sc0000059-1510915933:512534..512614Clytia hemisphaericaexon
TCONS_00005775-exon-sc0000059-1510915933:510483..510568TCONS_00005775-exon-sc0000059-1510915933:510483..510568Clytia hemisphaericaexon
TCONS_00005775-exon-sc0000059-1510915933:509835..509887TCONS_00005775-exon-sc0000059-1510915933:509835..509887Clytia hemisphaericaexon
TCONS_00005775-exon-sc0000059-1491911889:519722..519763TCONS_00005775-exon-sc0000059-1491911889:519722..519763Clytia hemisphaericaexon
TCONS_00005775-exon-sc0000059-1491911889:519258..519343TCONS_00005775-exon-sc0000059-1491911889:519258..519343Clytia hemisphaericaexon
TCONS_00005775-exon-sc0000059-1491911889:512534..512614TCONS_00005775-exon-sc0000059-1491911889:512534..512614Clytia hemisphaericaexon
TCONS_00005775-exon-sc0000059-1491911889:510483..510568TCONS_00005775-exon-sc0000059-1491911889:510483..510568Clytia hemisphaericaexon
TCONS_00005775-exon-sc0000059-1491911889:509835..509887TCONS_00005775-exon-sc0000059-1491911889:509835..509887Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:509835..519763 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.2715	11.3693	6.27537	2.39396	1.88275	1.73827	3.60959	2.2212	2.81451	5.54195	5.18739	2.01408	2.5281	3.739	1.44071	2.01402	0	1.15264	0	0.0733873	0.683909	0.132386	1.007	1.65924	17.024	20.4101	0.525635	1.12052	7.23954	7.93294
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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