TCONS_00005773 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005773
Unique NameTCONS_00005773
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length242

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005773 ID=TCONS_00005773|Name=TCONS_00005773|organism=Clytia hemisphaerica|type=transcript|length=242bp
GTGTTTTGGGTTTGTACATAATTTTCCCTTTTCATCGTTTTCAGGTATCA
TTGAATAAATGATGAGATGTATCCAAAACAATCCGAACAAGCCAAACCAC
CATTATGTTGCCTTTTCCAGAACCATCAAGgGACACGATTCGATGAGATA
TATCCAAATTAGTCTATACAAGCCAATCCACCATTATGTTGTCTTTTCTA
CAGCCATCAAGGTATCATTGAATAAATGATGAGATGTATCCA
Run BLAST on NCBI

transcript from alignment at sc0000059:508925..519387-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005773 ID=TCONS_00005773|Name=TCONS_00005773|organism=Clytia hemisphaerica|type=transcript|length=10463bp|location=Sequence derived from alignment at sc0000059:508925..519387- (Clytia hemisphaerica)
GTGTTTTGGGTTTGTACATAATTTTCCCTTTTCATCGTTTTCAGGTATCA
TTGAATAAATGATGAGATGTATCCAAAACAATCCGAACAAGCCAAACCAC
CATTATGTTGCCTTTTCCAGAACCATCAAGGTATTACGACTGCGATTTTC
AGTTTTATGGCAATAAAAAGCATGTAGACACGAATTTTATAAAGAAATTG
TGAGAGGTTCTAATATTTCAAACCGTTAAAAAGATACTACGAACCTTCAG
AATTTCGTTCAACTTTACTTTGTCAACCATACACCAGCCAGGGTACATAT
GGATGACTTTAAAGGATTCTAAAAATTCCCAAGATTAGCAGCACCTACNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACA
AAACAATGCAAATTCATATGTTCATTATATTTCCATTTGATCACAGGCTT
TTCGGCAGTACATTTATCGCTGATTCTTTGCCATTAGCCTCCGTCTCAGA
ACGCGGTCAGAAAATTTTGCGGATAATTTCACAGCGAAAATGCATCTAGT
GAAATGTGAGTAATGTATCATAATTCAAGTCGACTGACATAATTATCCAC
ATAATACATGTTACAAGTTCTGCCTACGGATTCACAAGCTCGGCTATAAT
AAAACTATTACATGTTAGTAGCAGACCCGACTGACCAATGTTATGTAGCA
GGTTGAAACATGAGTTTCTACTGGAAAGATGCAGTTTGTTTTCAAGTTAA
ATCTTCAAAATAAAGCAAAATGTGTGGGTTTCTTTACTTTCAAACAACCT
ACCAATAGTTTTGGAACACTCCATAATAAAGGAAGATGGCTCTTCTTGTG
GATTGGCTTTCTGATACCCCATATAAACACGATGTGACATGAAAGTGAAG
AGACACGATTTGTTGCTTTTTGTTTGATTTGTTGACTCATATATCTCATG
GCTAGCGGGATAGCAAATGACTTTTCATGTATTGCTTGGTTCTACATATG
ACACCTCTAACTTTGAACACCTCCAGAATGTTGAAAAAAGCATTTCACGA
GATAAGTTTCAATTATAATTTTCATGGAAATTTTTAATCGACAGATTTGG
CTTGGCGTCAGTTTTGTTTGGTTGATGTTTGGTATCGTGATCATTAAAAG
CAATGAAATGCCACAGTCACTCTACACGTGATGCCTCCAGCCATGATTGG
TATCAGAATGTTGGAAAAAAACATTTTACGAGAAATTGTTGATAGAAATT
ATATTGACTTGTTTTTACAATTTTGGCGGTGTGGGTTTTGTTGGTTGATA
ATGTTTACACCGTGGGATCCTGGGATAGTTTTCAAAAAACTGTTATATTG
ATTGTTGTTTGTTGGAATTGGGTACCAAAAAAAAAGAGGACCTTATAAAT
ACTTTATTTTTCTCATGAATCGAAAAAACCGTGTGGATAGTATGTCTTGT
AGTAACCAATGCAGTGTCTGTTTTCAAATTTTGAAAGCTCTACCTATACC
TACTGAATTGAAGCTCTGACTAGCTCTGAGCCATGTTTTATTCTTTGTTG
CTATTAAAGATAGATTTTTAAATTGTCGTAATGTAAATTTATGGTAAAGT
TTTAGTTTTTGAGTTTAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNTTCCCCGAACGTTCCTCAGGAATGAACTTTCATGACGTTATT
TTTAAGCGTTCCTCACTCGTTCCTCGAACGTTCCTCAGGAAAAGAGATGT
TTCAACTTTGTTTCAGCATTCCTCGTCTATTCCTCGAACGTCCCTGAGGA
AAGGACATTTTATGACGTTATTTTTAACCGTTGCTCACTCGTTCCTCGAA
CGTTCCTCAGGAATGGAAATATTTCCTTTTCACTTTATTGTTCCTCATGA
GCCGAAAAATCTTTTTTGCAAAAATCTGCTTTAGCCATCTTTTACCTAGG
CCTCAAAACACCATCTTTTACCTACGATAATACCCTACTTTTGTGCAAAA
AATCATGATCCAGTCGGGCTCTGTCATATTTGATGGTTTATAGTCATGCA
CCTTTGTGCCAATATCAGAAACTTTGAATGGGTCAATCTTGAGAAAAGCT
GGTAACTAACGTTGTCCGTGGGTTAATTTATAGGACCTCCATCGGGTTAA
GTTCAAAAAGCCTGTAGGGATTTCCAATGAACTTAAAACACAGGGTGAAA
AAAAAAAACCCTAGTTGTTTGTGAGCTTCCGTTACTAATGTGTTCTAAAG
GACAAAAGTATTTCTCTAGCCCTTTCTTTCATAAAAGTTTTTGATATTGA
ATATCTTATCCTTGAAAATGTATTAACAGCTCCAAAAGTGTTTTTTCCTG
AGAAACAAATGAGGAACTCTTTTAAATAACGTCATGAAAGCCCATTCTTC
AGGAACGTGTGAGGAAAAGATGATAAACGATAAAGTGAAGAAGAAATATC
TCGCTCGAGTGAGGAGCGCTTAAAAGTAACGTCATCCATTCCTGAGGAAC
GTTCGAGGAAGTAGTAAGGAACGCTTAAAAATAACGTCATGAAAGTCTAT
TCCTGAGGAACGTTCGAGGAACGAGTGAGGAACGCTTGAAAATAACGTCA
TGAAAGTCCGTCAGAAATGTTCATTCCTGAGGAACGAGTGAGGAACGCTT
GAAAATAACGTCATGAAAGTCTATTCCTGAGGAACGTTCGAGGAACGAGT
GAGGAACGTTCGAGGAACGAGTGAGGAACGCTTGAAAATAATGTCATGAA
AGTCCATTCCTGAGGAACGTTCGAGGAACGAGTGAGGAACACCTAAAAAT
TACGTCAGAAATGTCTATTCCTGAGGAACGTTCGAGGAATAGATGAGGAA
TGCTGAAACAAAGTTGAAATNATTCATGTAATTCCCTCAACGTACCTACT
TTTGTCTTCGCTTCGCAGATAGCGACGATGTGAGGCTTTTCCTCATGGGC
CATGGACTGTAGCTCCTTAATTTTAAATGAAGTCAACTGATCGGGATTTG
TATACAGAACTTTCATATCTTTGATTAATTTTTCTTTTTGAGCAAAGTTG
GCTTCTGTTGGTCTATGATATTTGTCTCCGTTAGGTTGTTCGAGAAGGAG
ACATTCTTCATTGTTGGTGACTGGTTGGGGGTTGACGGTTTTCTGAGTGG
TATCTTCTTGACAGTGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTTTAAAAAAA
CCACAAGTAGTTTTTAAGCGCCTTAACTTAGGTTTGGGAAGTAAAGTTTT
ATCTCTGAGTTTTAACATAAGACTTAAGACTGAGGATTGTAAAGCTTGCG
AATAGTCCGACTAGGCTGAGAATATACCTAATTTTGGACGATCTTTTCTT
CGCAAAGGCTTTTCCAGGATGTTAAAAATCCATTTTGATACTTGAATGTT
GCGACACCGTTGTCTTTTCTTTCTATTTTTCCCGATTCCATCCTCTATTC
ACTCAACACGGCCTCTCACTGCAGCTAGTGTGGGTTGAACTTGTACATAA
TTTTCCATTCTCAATTTTTTCAGGGACACGATTCGATGAGATATATCCAA
ATTAGTCTATACAAGCCAATCCACCATTATGTTGTCTTTTCTACAGCCAT
CAAGGTATTATTTTAATGCCATTTTCAATTCCACTCAAATAAAAATCTGA
CAAAACAATGCAAATTCATATATTCATTATATTTCCATTTTCCATAACAA
GCCGATAATTTTAAAAACCATAAAACAAAACAAAGTCCGAAAAGATTCAT
TCTGACATCAAAAATCTTGAAGTAACAGACGAAGTGATCTCATGTAAAAA
TGCTATATTTCGTATTCTATCTAATACATCATTCAGGCAAAAAGTAAGTA
CAAAGAATAAAAGCTACTATTTATAAAAGTCATGGTAAAAAAAAATCGTA
AAAATGTTATCAATAAAAAGGCAATTAAAATGTAAAATTGGCTAAGTATA
ATGATCCCAAGTGACTAATGATGAAAAGAAACTAATCTCGAGANNNNNNN
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NNNNNNNNNNNNNNNNGAAAAATATTATTTGACGTCAGAAATTTGATTGT
GACGACAATTTTTTTGAAATATGCAAAAAAGTAAGGGTCAAAAGTGATGT
GCCCCCATATAGACGAAGAGTTTTTTAAGAAGTAGGGAGAGATTGTAATG
TTTCAATTTTTCAACAGTTTCTACAAACCATGGGAATTTTGGTCAACTTT
ATTTTGTCAACCATACACCAGCCAGGGTACATATGGAGGACTTTAAAGGA
CTCAAAAAATTCCCAAGATTTGCACCTACACCTTAAAAGTCGACGGAATA
ATGTGTTACCTAGCAATTACCTGGCGACGTAATAAGTCAAATTCTGATCC
TCTTCATACTGAACTCTCAACTGCACCTAAATTTCGATCACTTTTTGTTC
TTGAAAGCTTTTCCAGGGTGATCAAAAACCGTTTTGATACTTGAATTGCA
AGGCCGTTGTCTTTTCTTTCTTTATTTCCGATCCCATCCTATCGCCACTC
GACACGGCTTCTCACTCGAGCTAGTGTGTTTTGGGTTTGTACATAATTTT
CCCTTTTCGTCGTTTTCAGGTATCATTGAATAAATGATGAGATGTATCCA
AAACAATCCGAACAAGCCAAACCACCATTATGTTGCCTTTTCCAGAACCA
TCAAGGTATTACGAGTGCGATTTTCAGTTTTATGGCAATAAAAAGCATGT
AGACACAGATTTTATAAAGAAATTGTGAGAAGTTCTAATGTTTCAAACCC
TTAAAAAGTTACTACGAACCTTGGGAATTTCGTTCAACTTTACTTTGTCA
ACCATACACCAGCCATGGTACACATGGATGACTTTAAAGGATTCTAAAAA
TTCCCAAGATTAGCAGCACCTACAATCAATGGCAGACTATTTGGCACAAT
AGGAGTTTCCCTCCGCATTTTAAAAAAACCACAAGTAGTTTTTAAGCGCC
TTAACTTAGGTTTGGGAAGTAAAGTTTTATCTCTGAGTTTTAACATAAGA
CTGAAGACTGAGGATTGTAAAGCTTGCGAATAGTCCGACTAGGCTGAGAA
TATACCTAATTTTGGACGATCTTTTCTTCGCAAAGGCTTTTCCAGGATGA
TAAAAATCCATTTTGATACTTGAATGTTGCGACACCGTTGTCTTTTCTTT
CTATTTTCCCGATTTCATCCTCTATTCACTCAACACGGCCTCTCACTGCA
GCTTGTGTGGGTTGAACTTGTACATAATTTTCCATTCTCAATTTTTTCAG
GGACAATCGATTCGATGAGATATATCCAAATTAGTCTATACAAGCCAATC
CACCATTATGTTGTCTTTTCTACATCCATCAAGGTATTATTAATGCCATT
TTCAATTCCTCTTACAAAACAGTGCAAATTCATATCCATTTGATCACAGG
CTTTTCGGCAGTTCATTTGTCGTGGATTCTTTGCGATTTCTCTTCATTTA
ATTCTTACAGGTCGAGTCCTGTAGCACCTTTTCTCTAAAAGAGAGCATTT
CTTATTGAAAAATATCGTAACATACTCACTTTGTGTCAAGATTCTTCAAA
TGCGCCCGACACACCAGCCGTGTGGTCCGAGTTTCTTTTTTTAATGCTGA
TTTTTTTACGTTTTTATTTATTTTCTAAGTTGAAAAATATTATTGGACGT
CAGAAATTTGAATATGACTTCACTTTTTTTTGAATTATGCAAAAAAGCGA
GGGTCAAAAGTTATGTGCCCCCATATAGACGAAAAATTTTTTAAGAAGTA
GTGATAGATTGTAATATTTCAATTTTCAACAGTTTACTACAAACCATTGG
AATTTTGGTCAACTTTATTTTGTCAACCATACACCAGCCAGGGTACATAT
GGAGGACTTTAAAGGACTCTAAAAATATCCAAGATTTGCACCTTCACCTT
AAAAGTCGACGGAATAATTTTACCTAGTAATTACCTAGCGACCTAATAGT
CAAATTATGATCTTCTTCATACTGAACTTTCAATTGCACCTAAATGTCGA
TCACTTTTTGTTCTTAAAAGCTTTTCCAGGGTTGATAAAAACCATTTCGA
TACTTGAATCGCAAGGCCGTTGTATTTTCTTTCTTTATTTCCGATCCCAT
CCTATCGCCACTCGACACGGCTTCTCACTCCAGCTAGTGTGTTTTGGGTT
TGTACATAATTTTCCCTTTTCATCTTTTTCAGGTATCATTGAATAAATGA
TGAGATGTATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003277XLOC_003277Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005773-exon-sc0000059-1575043694:519258..519387TCONS_00005773-exon-sc0000059-1575043694:519258..519387Clytia hemisphaericaexon
TCONS_00005773-exon-sc0000059-1575043694:512534..512614TCONS_00005773-exon-sc0000059-1575043694:512534..512614Clytia hemisphaericaexon
TCONS_00005773-exon-sc0000059-1575043694:508925..508955TCONS_00005773-exon-sc0000059-1575043694:508925..508955Clytia hemisphaericaexon
TCONS_00005773-exon-sc0000059-1510915933:519258..519387TCONS_00005773-exon-sc0000059-1510915933:519258..519387Clytia hemisphaericaexon
TCONS_00005773-exon-sc0000059-1510915933:512534..512614TCONS_00005773-exon-sc0000059-1510915933:512534..512614Clytia hemisphaericaexon
TCONS_00005773-exon-sc0000059-1510915933:508925..508955TCONS_00005773-exon-sc0000059-1510915933:508925..508955Clytia hemisphaericaexon
TCONS_00005773-exon-sc0000059-1491911889:519258..519387TCONS_00005773-exon-sc0000059-1491911889:519258..519387Clytia hemisphaericaexon
TCONS_00005773-exon-sc0000059-1491911889:512534..512614TCONS_00005773-exon-sc0000059-1491911889:512534..512614Clytia hemisphaericaexon
TCONS_00005773-exon-sc0000059-1491911889:508925..508955TCONS_00005773-exon-sc0000059-1491911889:508925..508955Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:508925..519387 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.79756	5.09946	2.85606	0	1.17457	1.2911	0	5.00019	0	0.0885887	0	1.55029	3.94357	2.71775	0	0	1.6619	0	0	1.56587	0	0	0	1.63656	2.60912	11.0492	3.58288	0	5.15899	4.19184
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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