TCONS_00005767 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005767
Unique NameTCONS_00005767
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005767 ID=TCONS_00005767|Name=TCONS_00005767|organism=Clytia hemisphaerica|type=transcript|length=852bp
TTTTAGTAGTTGTTGCGCGTCTATCGCATCTTTACCGCTGTTGAAACACT
AAAAACTGTTGCGATCAAAGATCCTCAGCTTTATCTGATGGTTTTCTTGA
TGTTATTGATCGATGGTATTATTTGTACAGCTTGGTTACTCGTCTCACCT
TATCAAATGACTAGCCTGGAAGTCAGCAGAAGAGTCATCAGCAACTCGAC
AGAATACGTGGAAGTGTACAACAGTTGTGTGGCTATTCATGACACCAAAT
TTGAAGTGGCCATGTTCTTATACAAAGGTCTGGTCATGTTGTTTGGCCTG
TTCATGGCTTGGGAAACCAGAAATGTTAATATCGCCGCTCTTAACGATTC
CAAACAAATAGGCATGTCGATATACGGAGTGGTGGTGATGGGTATATTGG
GTACAATTTGTATGTATGCATTGGAAGGCCACAAATTCGTCAACGTTCGA
TATGCTATTGTCACTTTAGCCATTGTTGTGTCTACATTCTCAACTGTTCT
ATTTGTGTTTTTACCGAAGGTTGTTCTTCTGTACGGCACCGAAGATCGAT
TACGTGAAAAGGAACGAATCAGAACACATTCTAAAGAATCATCCATTCAC
AACAGTTCCAATCTACATACCAACAGTTACCAAAGCAACCTGTCGTCGTC
AAGCAGTGATCGTCATGACAACAACTCATCAGTCGTTGATGCAATGGAAG
AAAACTCGTCACCAGGACAACCAGAAATGACTGGGAACTTGAATGTCATT
TATGAACATGATTGAGTTTTGTTCTACTGTAATAGAATCGCAAGGGATTC
CTCTCGTCTACACATAAGAAGAAATCCAAACAGCCACCGTGATTCATTGG
AT
Run BLAST on NCBI

transcript from alignment at sc0000059:460898..465087-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005767 ID=TCONS_00005767|Name=TCONS_00005767|organism=Clytia hemisphaerica|type=transcript|length=4190bp|location=Sequence derived from alignment at sc0000059:460898..465087- (Clytia hemisphaerica)
TTTTAGTAGTTGTTGCGCGTCTATCGCATCTTTACCGCTGTTGAAACACT
AAAAACTGTTGTAAGTATCGCTAGTTGTTGTAGTTGTTGCGCGTCTATCG
CATCTTTACCGCCGTCGAAGCACTCAAAACTGTTGTAAGTATCGCTAGTT
GTGGTTGTGGCGGTCTGAAGAGAGGCTCGTATGTTTTAGATTTTTCGATG
AGGACTAAATTTCACGGTATATTATTTGTAAATTTTGATACTCCAATTTA
GAAAATATCTTAAAATACCCTATGATTCTAAAACGTGTATTTACTGACTT
TTCTTCCCACCAGGCGATCAAAGATCCTCAGCTTTATCTGATGGTTTTCT
TGATGTTATTGATCGATGGTATTATTTGTACAGCTTGGTTACTCGTCTCA
CCTTATCAAATGACTAGCCTGGAAGTCAGCAGAAGAGTAAGTCAAAAAAT
GCTTTCAAATTTTTATATTGATTAGGGGCTTCAAACTCAATGTGGTGATT
ACGCTTCCCTCCCTCGCTTTCTTTCTCTTCCTCGTAGTACAAAACCCAAA
ATAAATCTAATCAAAGTAAGACATTAAAAAAAAATTCCACGTGACCATTG
TCTAATTCTCTTCGATATCTGGTACACATAGGTGGTTTTAGACCGTGTCG
AAGCTAGCAGGGGAAGAGATTTGCAATTGTAATTTCGTTGTCAATTAACG
AGCGTTGCGCTCCTTCGCATGTTTCTGACGTAATTGCTCTTTTGTCTTAA
ATCCGTCAGTGGCATATAATAAGAATTTGAACTTTAGAAAATGGTCATTT
TTCTGTTGAGCTCTTTTTCTAGATTTTACAAAAATGCACAGTTCTTTATA
TAAGAATCACATAATAAGGCTTGTGTTCCTTTAACAGATGGCCAGTTTGT
TTTCTTCTCCAACATACAGTGTGTCCTAAAAAAGCGGACAAATTTATCAA
ATCCCCTCATAGTTTATGCCAATTTTATGACTTATATACTTAATATTTCA
ATCACAAAAACCTACTTAATCGTCTTGGGAGTTGAGTATCTATTGATAGA
ACAGAATTTTAATCTTATTTCAATTACTCAAAGCCGTTGTCTTTGTATTA
TCAGCTTTTTTATGCTTACTGATTGCGCTGGATAATAAATATTCTCTGGC
GTCTATAAGTAACATAAATAAAGCCTGGAATACATGGTGACGAGGTTGCT
CAATGCCCAGTTAAGATAATGAGTTTTGAGGATTTTATTTTATATGAAAA
TTTAACATTTGTCCGTTTTTTTCGGACACACTGTAGGTCATCAGCAACTC
GACAGAATACGTGGAAGTGTACAACAGTTGTGTGGCTATTCATGACACCA
AATTTGAAGTGGCCATGTTCTTATACAAAGGTCTGGTCATGTTGTTTGGC
CTGTTCATGGCTTGGGAAACCAGAAATGTTAATATCGCCGCTCTTAACGA
TTCCAAACAAATAGGTACGTGGGTTTCAATCTTGCTTTCATTACATCCCT
TTCTCACAGACCCACAAACCCTCCTTTCCTTTCCTTTATGTCCATGAATT
CCACACTGGGCGAATAGACGATATCGGCTTTCCGAATTCTCCCCGAATGA
TTACCCATGATGCATTGCGCAAAAAAGTTCACGGACAATATTGACTCACT
GAATTTTTTTGCGCAATGCATCATGGGTAATCATTCGGGGAGAATTTCGT
TAAGCCGATGTCGTCTATTAAGAGATCCGATCCTGGAAATATCTTGAAAA
TATAATATTTCCATGTACATTTGTATATATGGAAATATGACTTTTCTGTA
TTTCAAAAGTTTAGGAAATATCATATTTCAAAAGTTTAGGAAATATCATA
TTTCAAAAGTTTAGGAAATATCATATTTCAAAAGTTTAGGAAATATCATA
TTTCAAAAGTTTAGGAAATATCATATTTCAAAAGTTTAGGAAATATCATA
TTTCAAAAGTTTAGGAAATATCATATTTCAAAAGTTTAGGAAATATCATA
TTTCAAAAGTTTAGGAAATATCATATTTCAAAAGTTTAGGAAATATCATA
TTTCAAAAGTTTAGGAAATATCATATTTCAAAAGTTTAGGAAATATCATA
TTTCAAAAGTTTAGGAAATATCATATTTCAAAAGTTTAGGAAATATCATA
TTTCAAAAGTTTAGGAAATATCATATTTCAAAAGTTTAGGAAATATCATA
TTTCAAAAGTTTAGGAAATATCATATTTCAAAAGTTTAGGAAATATCATA
TTTCAAAAGTTTAGGAAATATCATATTTCAAAAGTTTAGGAAATATCATT
TTTCATGATGGAAATATTTTGAAAATATGATATTTCAATGAATTTCAGAT
TTGGAAATATCATGAAATATGTTATTTCTTAAACTTTGGAAATATAGACA
AGTCATATTTCCATATTTACTAATGTATATAGAAATATCACATTTTCAAG
ATATTTCCAGGATTGGAAATCTCTTTTCGCCAGGTTTAAACTCCATCGAT
TAGGACCCCAGGTTGATTAATTTTCAGGGTTGAAGTACAGTAGCCCCTAG
TTTGAACTAATTTCAAGTCCCTTTCTAGGAGAAAGTCTCCTTTAGGAAAG
ATTCTCTCTGTTATTCGAACAAATGATATTCCCCCTTCGAGTTCGAATTA
GCGAGAGTAAGCTGTAACATTTTTCTTTAAGGCATGTCGATATACGGAGT
GGTGGTGATGGGTATATTGGGTACAATTTGTATGTATGCATTGGAAGGCC
ACAAATTCGTCAACGTTCGATATGCTATTGTCACTTTAGCCATTGTTGTG
TCTACATTCTCAACTGTTCTATTTGTGTTTTTACCGAAGGTATGTTACGC
ACACATTGTGTTTTCTGTGGAAGACATTTTTTATAAGCAGTCAGGAGCCT
TTGTTTACATGTTTTTTTATAAGCAAGTGCCCCAATATCAGGCTCGCGTT
ATGCTTAGTAATCTATTGTTCTCAAATAATACCCAAAACTACTGAGCCTG
CATATGCTTATAAACGTTATGCTTATAAAAGAAAAAACATGTAGCGGATA
TTATCACTATTTAACAAAAGCTATTTAGATAAGCCATAAGCAGGGTATAA
TATCAGCAAATTTTAAGCAAATCTTTCAGAAAATTAGCTACTTTGCTAAG
CCCCACACTAGGTCTGATCCGAAAAATGGAATTGCTTATAAAAAAATAAA
GTGTAATACTTCAATGGTAAATGATTTGTTGGGCCTCAACCTCGTTCCCT
GCGTATTATCAGCTTTTTTATGCTTACTGATAGCGCTGGCGTCAGTCAAT
AACGTGAATAAAGCCTGGGATACACGGGGACGAGGTTGATTGGGCCTTTT
AAGACCTTTTTTCCGATTTTTTTTCGAGATGAAGTTCCTCTATATCAATT
TTTTCCAAAAGTTGAAATTCAATTTGAGAAACTTAACTACTCAAAATATT
AGTCGGGTCCCAAATGGAATTTTGTTGAGTTGTCTAAAATCGTCTCTAAC
AATAACTTTTTAGCGAATTCTAGTTTTAACCCCTTAGTACGTAACAAACT
TTTCTACGCAATAAAAAATTATACTCGATTTGCGACTGAGAAGCATGTTT
TGTTTAGACCAGGCAATGACTCGTTACGCCACCTTTTGGTAGAAAATGTG
CCATATTGATTTTTGGGTGCGTTTCGGAACCATGTGTGCACCATCCGTGT
CTGATACATTTTCAAGCAAGTCGTTTGTTTCCTCTACGGTGGGGTGGTGT
TTTACCCGTTGTTGTTTTAATAACACCCGACAAGGATTAAAAAAATGCAG
AAATCGTCTGTGGTAGTAACACGGGACAGGCTAAAATATTCTTTACTTTT
TTCGAAGGTTGTTCTTCTGTACGGCACCGAAGATCGATTACGTGAAAAGG
AACGAATCAGAACACATTCTAAAGAATCATCCATTCACAACAGTTCCAAT
CTACATACCAACAGTTACCAAAGCAACCTGTCGTCGTCAAGCAGTGATCG
TCATGACAACAACTCATCAGTCGTTGATGCAATGGAAGAAAACTCGTCAC
CAGGACAACCAGAAATGACTGGGAACTTGAATGTCATTTATGAACATGAT
TGAGTTTTGTTCTACTGTAATAGAATCGCAAGGGATTCCTCTCGTCTACA
CATAAGAAGAAATCCAAACAGCCACCGTGATTCATTGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003275XLOC_003275Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005767-exon-sc0000059-1575043694:465028..465087TCONS_00005767-exon-sc0000059-1575043694:465028..465087Clytia hemisphaericaexon
TCONS_00005767-exon-sc0000059-1575043694:464652..464774TCONS_00005767-exon-sc0000059-1575043694:464652..464774Clytia hemisphaericaexon
TCONS_00005767-exon-sc0000059-1575043694:463624..463801TCONS_00005767-exon-sc0000059-1575043694:463624..463801Clytia hemisphaericaexon
TCONS_00005767-exon-sc0000059-1575043694:462249..462406TCONS_00005767-exon-sc0000059-1575043694:462249..462406Clytia hemisphaericaexon
TCONS_00005767-exon-sc0000059-1575043694:460898..461230TCONS_00005767-exon-sc0000059-1575043694:460898..461230Clytia hemisphaericaexon
TCONS_00005767-exon-sc0000059-1510915933:465028..465087TCONS_00005767-exon-sc0000059-1510915933:465028..465087Clytia hemisphaericaexon
TCONS_00005767-exon-sc0000059-1510915933:464652..464774TCONS_00005767-exon-sc0000059-1510915933:464652..464774Clytia hemisphaericaexon
TCONS_00005767-exon-sc0000059-1510915933:463624..463801TCONS_00005767-exon-sc0000059-1510915933:463624..463801Clytia hemisphaericaexon
TCONS_00005767-exon-sc0000059-1510915933:462249..462406TCONS_00005767-exon-sc0000059-1510915933:462249..462406Clytia hemisphaericaexon
TCONS_00005767-exon-sc0000059-1510915933:460898..461230TCONS_00005767-exon-sc0000059-1510915933:460898..461230Clytia hemisphaericaexon
TCONS_00005767-exon-sc0000059-1491911889:465028..465087TCONS_00005767-exon-sc0000059-1491911889:465028..465087Clytia hemisphaericaexon
TCONS_00005767-exon-sc0000059-1491911889:464652..464774TCONS_00005767-exon-sc0000059-1491911889:464652..464774Clytia hemisphaericaexon
TCONS_00005767-exon-sc0000059-1491911889:463624..463801TCONS_00005767-exon-sc0000059-1491911889:463624..463801Clytia hemisphaericaexon
TCONS_00005767-exon-sc0000059-1491911889:462249..462406TCONS_00005767-exon-sc0000059-1491911889:462249..462406Clytia hemisphaericaexon
TCONS_00005767-exon-sc0000059-1491911889:460898..461230TCONS_00005767-exon-sc0000059-1491911889:460898..461230Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:460898..465087 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.31077	2.00674	0.78572	0.62419	0	0.224104	0	0.308302	1.92955	1.97155	1.26804	1.95289	1.39962	1.93592	3.68955	0.718311	0.561198	0.081188	0.153841	0.128881	0.294163	0.0401375	2.48334	1.80554	0	0.0231245	0.728035	0.392163	1.58669	0.919437
Blast
[Close]
BLAST of TCONS_00005767 vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.234e-22
Identity = 63/155 (40.65%), Postives = 85/155 (54.84%), Query Frame = 1 
Query:   16 RVYRIFTAVETLKTVAIKDPQLYLMVFLMLLIDGIICTAWLLVSPYQMTSLEVSRRVISNSTEYV--EVYNSCVAIHDTKFEVAMFLYKGLVMLFGLFMAWETRNVNIAALNDSKQIGMSIYGVVVMGILGTICMYALEGHKFVNVRYAIVTLAI 474
            RV+ IF  V+  K + IKD +L ++V  MLLID  I   W  V P + T  + S        +     +   C   H T +   ++ YKGL+MLFG F+AWETRNV+I ALNDSK IGMS+Y V +M I+G    +        NV++ IV L I
Sbjct:  577 RVHAIFKNVKMKKKI-IKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSMEPDPAGRDISIRPLLEHCENTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGAAVSFLTRDQP--NVQFCIVALVI 728
The following BLAST results are available for this feature:
BLAST of TCONS_00005767 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GABR23.234e-2240.65Gamma-aminobutyric acid type B receptor subunit 2 ... [more]
back to top