TCONS_00005766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005766
Unique NameTCONS_00005766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005766 ID=TCONS_00005766|Name=TCONS_00005766|organism=Clytia hemisphaerica|type=transcript|length=301bp
TTCAGCAAAGAAATGGTCGTAAAAACACCTTGGCAATTCGGTGATCGCTC
GTCACGTGATCaacctgatgacgtcactctCCCCATGCTCCGTGTGGAAC
ATCCAGCATCTCGTATTGGTGACCCAGCATCTTTGAAGCTTCGCGGCGTT
TCAAGATTATCTTCTAGAGGCAGTCACAAAGATGATATTATGCTATTACC
AGACATTCCATCgcatgctgacgtcatcattggtGAAGATCGAAGTCAAA
TCAGAATTCCAATCTTTGGAAATGCAGCTAACATGAGTGTTCGTAGTGAA
A
Run BLAST on NCBI

transcript from alignment at sc0000059:433814..438958-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005766 ID=TCONS_00005766|Name=TCONS_00005766|organism=Clytia hemisphaerica|type=transcript|length=5145bp|location=Sequence derived from alignment at sc0000059:433814..438958- (Clytia hemisphaerica)
TTCAGCAAAGAAATGGTCGTAAAAACACCTTGGCAATTCGGTGATCGCTC
GTCACGTGATCAACCTGATGACGTCACTCTCCCCATGCTCCGTGTGGAAC
ATCCAGCATCTCGTATTGGTGACCCAGCATCTTTGAAGCTTCGCGGCGTT
TCAAGATTATCTTCTAGGTGAGAAATTTAAAGTCGGTTTGTAAGATACAC
AACCAGCGCATCAGGTGGCAACAGATACACCCTGCACGCCCAAACTGTTA
ACATACTCTAAGAATGAACTCTATTAGGCTATCCGGGCTATTCATATGAA
ATTGCTTTATATTGTTGTAGCCCCGCCCCTTTTTTTTGCAAAAAAAAAGA
GAGAGAGAGAAAGAGAGGGTGAGAGAAAAAAGACTTGGCTACGTTCAACA
ATGAAGCCAAAACGGTTTAACAATCTTTCTTTGCTCCATATCCATAAAAA
TATAACAGATAAACTTGATTTAGATGAAGTTGGTAGGGGGTGTACGGTAT
TTCTGAATTGCGGAAATTTACCCTTTTTTCTTCGAAATTGCAGAAATCGA
CCCTTCTTTCTTTGGAATTTCGGAAATCGGGCAAAATTCCTTCGGTATTT
CGGAATGCTGAAATAGTTTCGGTATCGGAAATCCATGAATTTTTGTTTCG
GAATTTTGGTATTATAAAGTTTCTATCCCTCTTTTTCGGAATTCATACAT
GAAAAATCAAATTTGATGAAAAATTAGTCAAAACGAGGAAAAATACCCTA
AGAAATCGGAATCGGAATCGCAAGTATTTTTTTACGGAATCTCGGAAATT
TTAGCAAAATTATATGGTATTTCTGAAATCGCAAACCCCGTACCCTTGGT
AGAGAGTTTGTGTCGACTCGAGAGCATCGCTTCAATTACTTAATTACAAT
TTTAATTTTTATTACTGTATATGCTTACTGTCTGTTAAAGCATACTCTCA
ATCTACTTTTACTTATGAATTTTGAGCATGTAAAAGTCCGCTTTATTTAC
TGATAGGTTTAATTTGGTTAATATATCTAGTAGTATATTCTTTGGTGATT
ATCAGTATAAAAAAAGCCTAACTTTTTTTTTGATTTTTTCATTCAAATAA
CTTCATAAAAATTTAATTTAGACCACTTCTAGGCCAATGTAGAGTACCAT
AATGTCAAAAATTTTCCGACCCGTTGGCCCCAACCTTGGTGGCCGCCTTA
GTCACTATATCATTTAGCCACATCGTTCCTATAAAACTGTTCTTATAAAA
GAAGAATAGTGTAATCATCTCAACATTTCAGAGGCAGTCACAAAGATGAT
ATTATGCTATTACCAGACATTCCATCGCATGCTGACGTCATCATTGGTGA
AGATCGAAGTCAAATCAGAATTCCAATCTTTGGTAAAAAGAGTCTTTTTA
TAATTAGTCTTAAAGTGTTCCTACTTTGTTCGCCGACAGTTTTCTCTTTC
AAAAGTATGAGGGAGCTTTGTTCTTAGATTTGTGTTCTTATATTAAAAAC
CATGTAGTTCAGGTCAAACAACTTACAAATATCAATTGGGTAGGGATTTT
AATTCATCTAACTTTTTTCGCCCTTTCCGGTACATGTTTTTCTATAAGAA
CATCCAAAATCTTTGAAGCCTTCGTATGTTATTAACTTTTTGAGTTTTAA
ACCTAAAATTGTTTTTAACATGCTCTTATTTTCACCATTTTGAGAGTACT
TTTGTCCATTTTTCGAAGAAAATAGGTGTTTAGGGTCAAAAAAGCCTTAA
ACTGCTCTTAACTTGTTCTTAACATTTTAGCAATCGAAGTCTTACGTTCT
AATATAGTTTGTTCTTATAAAAAAAACGTGTAGTTTCATTGTAAGGTCTA
TTTTCAGCTGATGATTGCTAAATGTTTTTCTGAATTTTCTGTATCTTCCG
AACTTTCTAGTTTCGTTTCAAGATGGGAATTCTAACATCTTGGAAGTTAA
TCATTATTTTTTCTACTTTTCCACTTTTTGCTAGAGAGTAGGTTTATAAG
CTCTTTAGGAAGTAGAAGATTTAAGTAAAAGGTTATTAGGAAACATGTCT
TCCTCAATGTTATGTTCACGTGTATTATATCTACGTTCGGGTGTGTGCGA
GCAAAAACTCTTTTTATAAGAACCAATACAGGATGGATCTTCTCTCCAAT
TTTGGGCCTCAAATTGAACCTATAATGTTCTCAATTTTGATAGTTGAGCC
TTGAATTGTTTGAATTTGAGAAATTCCAGGCTTAGCTCTGTTCTTAAGTT
TTTTTTATCGCAATCTCATCTTCTTTTCTTCAAAACATTGTTCTCATTAC
ACCTTCTATGCTCAAGCAATCCCTCTCTATTCATTTTCAAGCAGCCCAAT
CTGCTCCAAGAACACTTTCTCAGCTCTTCCTTAAGCAGCACTGACTTCAA
ATATTTTTTTTTTTTTAACAAACCTACTACTGGTAATTAGATTGATATAG
CTTACCCGTCTGCTTTCAGGGTTTCTGTGTCGTGGGATAGATCTTCCCAC
GCTACCGAAACCCTGGACAGCATAATAGTTTTGAGCCTCATTGTTCTTAT
AAAAAAAGATTGTACCTTTTCACAACTTTTGAAAAAACTTGAAATCACGG
ATATAAGAAATCTCTAACCTCAATGGCTCACAATTTACGGATAATTTGAA
CCAAAATTTGCTATCTATTCTAGTCGACCAGAATTCTGGAAAAATCTATC
TAAGAGTCCCAAAAAAACGTTGTTTACAACACATCGAGCTGCTGTTGAAG
ATTATTTCAATGCTTTCAAAATGGACTCATCAATTTTAATTCACGACCTT
TTCCACATTATTTTTATCTATTTTTATCATTAAAGGTTAGGATAAATGGA
AAATCCGTTTAATTGAGCGAGTATGTCCAAGCCAAATAAGAAAAATCAAT
CGAAGTTTTGTAGAAACAAACCGGCCGGTTTAATAAGATATGTAGCTCTG
TTAAGTCTGCACTTGTCTTTTGGCAGCACATGGCTACAACTTGTTTCCAC
ACTAACTTGTCAATGTTACAGTAATCATTCTATGGTTTTGTAGAAACAAA
CGGGCCGCTTTAATAAGATAGCCCAGTAGTCTGCACTTGTCCTTTGGCAG
CACATGGCTACAACTTGTTTCCACACTAACTTGTCAATGTTACAGTAATC
TTTCTATGGTTTTGTAGAAACAAACGGGCCGCTTTAATAAGATAGCCCAG
TAGTCTGCACTTGTCCTTTGGCAGCACATGGCTACAACTTGTTTCCACAC
TAACTTGTCAATGTTACAGTAATCTTTCTATGGTTTTGTAGAAACAAACG
GGCCGCTTTAATAAGATAGCCCAGTAGTCTGCACTTGTCCTTTGGCAGCA
CATGGCTACAAATTGTTTCCACACTAACTTGTCAATGTTACAGTAATCTT
TCTATGGTTTTGTAGAAACAAACGGGCCGCTTTAATAAGATAGCCCAGTA
GTCTGCACTTGTCTTTTGGCAGCACATGACTACAAATTGTTTCCACGCTA
ACTTGCCAATATCACAGTAATCTTTCTATTTCTATGATTTTGTAGAAACA
AACGGGCTGCTTTAAGAAGATAGCCTGGTAGTCTGCACTTGTCCTTTGGC
AGCACATGGCTACAAATTGTTTCCACACTAACTTGTCAATGTTACAGTAA
TCTTTCTATGGTTTTGTAGAAACAAACGGGCCGCTTTAATAAGATAGCCC
TGTAGTCTGCACTTGTCCTTTGGCAGCACATGACTACAAATTGTTTCCAC
ACTAACTTGCCAATGTTACAGTAATCTTTCTATGGTTTTGTAGAAGCAAA
CGGGCCGCTTCAATAAGATAGCCCAGTAGTCTGCACTTGTCTTTTGGCAG
CACATGGCTACAAATTGTTTCCACACTAACTTGTCAATGTTACAGTAATC
TTTCTATGGTTTTGTAGAAGCAAACGGGCCGCTTCAATAAGATAGCCCAG
TAGTCTGCACTTGTCTTTTGGCAGCACATGGCTACAACTTGTTTCCACAC
TAACTTGCCAATATCACAGTAATCTTTCTATGGTTTTGTAGAAACAAACA
GGCCGCTTTAATAAGATAGCCCTGTAGTCTGCACTTGTCCTTTGGCAGCA
CATGGCTACAACTTGTTTCCACACTAACTTGTCAATGTTACAGTAATCTT
TCTATGGTTTTGTAGAAGCAAACGGGCCGCTTCAATAAGATAGCCCAGTA
GTCTGCACTTGTCTTTTGGCAGCACATGGCTACAACTTGTTTCCACACTA
ACTTGTCAATGTTACAGTAATCTTTCTATGGTTTTGTAGAAGCAAACGGG
CCGCTTCAATAAGATAGCCCAGTAGTCTGCACTTGTCTTTTGGCAGCACA
TGGCTACAACTTGTTTCCACACTAACTTGCCAATGTCACAGTAATCTTTC
TATGGTTTTGTAGAAGCAAACGGGCCGCTTCAATAAGATAGCCCAGTAGT
CTGCACTTGTCCTTTGGCAGCACATGACTACAAATCGTTTCCACACTAAC
TTGCCAATATCACAGTAATCTTTCTATGGTTTTGTAGAAACAAACGGGCC
GCTTTAATAAGATAGCCCTGTAGTCTGCACTTGTCCTTTGGCAGCACATG
ACTACAAATTGTTTCCACACTAACTTGCCAATGTTACAGTAATCTTTCTA
TGGTTTTGTAGAAGCAAACGGGCCGCTTCAATAAGATAGCCCAGTAGTCT
GCACTTGTCTTTTGGCAGCACATGGCTACAAATTGTTTCCACACTAACTT
GCCAATGTTACAGTAATCTTTCTATGGTTTTGTAGAAGCAAACGGGCCGC
TTCAATAAGATAGCCCAGTAGTCTGCACTTGTCTTTTGGCAGCACATGGC
TACAAATTGTTTCCACACTAACTTGCCAATGTCACAGTAATCATTCCATT
TCTATGGTTTTGTAGAAACAAACGGGCCGCTTTAATAAGATAGCCTGGTA
GTCTGCACTTGTCTTTTGGCAGCACATGACTACAAATTGTTTCCACACTA
ACTTGCCAATGTCATAATATCTATCAACCCTTACACACTACAATCGTCTT
TCGTGAAACTGATAGCAAGAGGCTCGATATGTGTATATTTCATTTTCAAT
CATCTTTCTTAGGAAATGCAGCTAACATGAGTGTTCGTAGTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003274XLOC_003274Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005766-exon-sc0000059-1575043694:438792..438958TCONS_00005766-exon-sc0000059-1575043694:438792..438958Clytia hemisphaericaexon
TCONS_00005766-exon-sc0000059-1575043694:437577..437677TCONS_00005766-exon-sc0000059-1575043694:437577..437677Clytia hemisphaericaexon
TCONS_00005766-exon-sc0000059-1575043694:433814..433846TCONS_00005766-exon-sc0000059-1575043694:433814..433846Clytia hemisphaericaexon
TCONS_00005766-exon-sc0000059-1510915933:438792..438958TCONS_00005766-exon-sc0000059-1510915933:438792..438958Clytia hemisphaericaexon
TCONS_00005766-exon-sc0000059-1510915933:437577..437677TCONS_00005766-exon-sc0000059-1510915933:437577..437677Clytia hemisphaericaexon
TCONS_00005766-exon-sc0000059-1510915933:433814..433846TCONS_00005766-exon-sc0000059-1510915933:433814..433846Clytia hemisphaericaexon
TCONS_00005766-exon-sc0000059-1491911889:438792..438958TCONS_00005766-exon-sc0000059-1491911889:438792..438958Clytia hemisphaericaexon
TCONS_00005766-exon-sc0000059-1491911889:437577..437677TCONS_00005766-exon-sc0000059-1491911889:437577..437677Clytia hemisphaericaexon
TCONS_00005766-exon-sc0000059-1491911889:433814..433846TCONS_00005766-exon-sc0000059-1491911889:433814..433846Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:433814..438958 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.18306	9.12944	5.30151	3.1762	118.821	81.0671	36.1205	40.3125	49.98	87.5361	59.2357	57.1565	3.9807	3.90272	0.378581	1.78663	0.826603	1.19809	0	0.241776	5.23871	4.89909	20.5313	10.7515	0.22696	1.20796	51.0994	53.5649	8.09107	10.8608
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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