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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005758 ID=TCONS_00005758|Name=TCONS_00005758|organism=Clytia hemisphaerica|type=transcript|length=1149bp
TTAGTTTTCAGTGTATTAAAAAATGGCTTGTTATTACAAACATGGGTTCG
GTGTCTCTTTTGTCTTACTCTTACTGTCTTTGGTTGGCTCACTAGCCTGT
GTTTTCACGACCAATTGGATTTATGATGGTGAAAAGGGGCTATTCAAAGG
GTTGATTGCTTTCAAAGGAGATTGTGATGGTTGTGTGGAGTGGGAACCAA
GAGATTCACTCTTCAAGTTCAAAAACAGGAGAACTCGTGTTTTGGACATA
GCTCTGATCCTTTACTCCATCGCTTCCATTTGCTGCTTCTTTTCGGTCGT
GATACACATTCTTATCTTGATTCGAAGTCCGTATAAAACCTTGACCGGAT
ACGTAACGTCCGTCTTCACTTCCACTTTTGTTGCCGCTATTTGTGCCATC
ACCGCATTAGTATACGGATCAGTGGCCGAAGACCGGATTTTCGATGCAAC
GGGCGCTTCTATCAACAAAATCTACACTTTCTATGTAGCCTGTGTGACAT
GTTTTTGTTTGGGTGTAGCCTGTATTCTCATCCTCTGTACGCGATGTATG
CGAAGAACCAGTATAACATTAATCGTTTGAACGTGTTTggaaacccagct
ggcacacaacgttgtttcaatgttcacctTACGTTCACAaagtccatata
acgttagatgaacgttgaaacaacgcgtTTTTGTCAGCTGGATATAGAGA
CACTTCTTTCGTTCAATTTTTGTATCCCAATCAATATAAAATCTCAGAAG
CTGCTTTATAACCCAAAATTCTTTGGCCTTTAGATCACGCGACACCCggc
tggcacacgacgttgtttcaacgtccatctaacgtttaCAACGTCatatt
agatgaacgttgaaacaacgctgtgtgccaGCTTGGTTTCTTATAGATCA
TCGAGTACCGACGTGTCTTTAATAAAAGCGATTTGAAAATCGGACTTGAA
GCAAGTTTGGTTACAAATGGGAGTGGTTGGAGATACAGCGAATGGGACAA
ACGCATAATTCAATGCATTTTACACCTAGAATCACAATAGATGATATTTC
ATCAAATCTATCCTTcattaattttgtaaaatatatgttgttatttttgt
ataaaaCTAGTGTTCTTTGTTCTTACTTCCTTAACCCTTAAGAATATTC Run BLAST on NCBI protein sequence of TCONS_00005758-protein >TCONS_00005758-protein ID=TCONS_00005758-protein|Name=TCONS_00005758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MACYYKHGFGVSFVLLLLSLVGSLACVFTTNWIYDGEKGLFKGLIAFKGD
CDGCVEWEPRDSLFKFKNRRTRVLDIALILYSIASICCFFSVVIHILILI
RSPYKTLTGYVTSVFTSTFVAAICAITALVYGSVAEDRIFDATGASINKI
YTFYVACVTCFCLGVACILILCTRCMRRTSITLIV Run BLAST on NCBI transcript from alignment at sc0000059:261847..263812- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005758 ID=TCONS_00005758|Name=TCONS_00005758|organism=Clytia hemisphaerica|type=transcript|length=1966bp|location=Sequence derived from alignment at sc0000059:261847..263812- (Clytia hemisphaerica)
TTAGTTTTCAGTGTATTAAAAAATGGCTTGTTATTACAAACATGGGTTCG
GTGTCTCTTTTGTCTTACTCTTACTGTCTTTGGTTGGCTCACTAGCCTGT
GTTTTCACGACCAATTGGATTTATGATGGTGAAAAGGGGCTATTCAAAGG
GTTGATTGCTTTCAAAGGAGATTGTGATGGTTGTGTGGAGTGGGAACCAA
GAGATTCACTCTTCAAGTTCAAAAACAGGAGAAGTAAGTTGCACCCACAT
TCCATCTAATAAAATCCGAAATTTCATCCCATAAAGTATCTAACAAAACC
TAATATTTCACTTTCTTTGAGGTGATGTCATCTATGTGGGGACTGATTTT
GTTTTAGTTACTTACATTATCTTTTTATGATTTCCTGACTGTGTGTATAT
AGTTACACACCACGAGAAACTGTAGTAACTAACTCTAGGCCACCCCTAAA
CTACACAGAGCTTGAAAATTTTTCAGGCTTCGTGTAGTTTAGGGGAGGTC
ACATTTTCTCGCAGTGTATAACTACATACATACAGTCCCTTTCGACGTAT
GAAAATAATGTCATAACCATAACGTGTCTGAAAATATAATTCCTTATGTG
CATTTATCTTTGTATTCAGCTCGTGTTTTGGACATAGCTCTGATCCTTTA
CTCCATCGCTTCCATTTGCTGCTTCTTTTCGGTCGTGATACACATTCTTA
TCTTGATTCGAAGTCCGTATAAAACCTTGACCGGATACGTAACGTCCGTC
TTCACTTCCACTTTTGTTGCCGGTATGTATCTTTCTTCACCTCAAAGTAC
AAGCAAGCTAAACTGAGGCAAATTTTGTATTGAATTGACAAATTTTTGGT
TGCAATGAATTAAAATTTTTGAAAGCCCCAGCTACATATGACACAGTTAT
GTATCAAAAATAAGTGACGGCTCCTAAGCTCGCTTGCCATGCTTAACCCA
AACCCTAACCCTGTTTTGAATATATAACTTATAGGTTACTGTTTCGCATT
TTGTTGGTTCTACATTATAAAATTTGTCCCATATAAGGTTCCTAGCAACC
TCGTTCCCGTGTATCCCAGGCTTTATTTACGTTACTGATTGACGCCGATT
ATCTAGCGCTATCAGTGAAGCGTCAAAGCGATGATAATACACATGGAACG
AGGCTGGGTTCCTAGAAACAATAACTTTTAAATTATTTTTGTTCTATTTT
TAGCTATTTGTGCCATCACCGCATTAGTATACGGATCAGTGGCCGAAGAC
CGGATTTTCGATGCAACGGGCGCTTCTATCAACAAAATCTACACTTTCTA
TGTAGCCTGTGTGACATGTTTTTGTTTGGGTGTAGCCTGTATTCTCATCC
TCTGTACGCGATGTATGCGAAGAACCAGTATAACATTAATCGTTTGAACG
TGTTTGGAAACCCAGCTGGCACACAACGTTGTTTCAATGTTCACCTTACG
TTCACAAAGTCCATATAACGTTAGATGAACGTTGAAACAACGCGTTTTTG
TCAGCTGGATATAGAGACACTTCTTTCGTTCAATTTTTGTATCCCAATCA
ATATAAAATCTCAGAAGCTGCTTTATAACCCAAAATTCTTTGGCCTTTAG
ATCACGCGACACCCGGCTGGCACACGACGTTGTTTCAACGTCCATCTAAC
GTTTACAACGTCATATTAGATGAACGTTGAAACAACGCTGTGTGCCAGCT
TGGTTTCTTATAGATCATCGAGTACCGACGTGTCTTTAATAAAAGCGATT
TGAAAATCGGACTTGAAGCAAGTTTGGTTACAAATGGGAGTGGTTGGAGA
TACAGCGAATGGGACAAACGCATAATTCAATGCATTTTACACCTAGAATC
ACAATAGATGATATTTCATCAAATCTATCCTTCATTAATTTTGTAAAATA
TATGTTGTTATTTTTGTATAAAACTAGTGTTCTTTGTTCTTACTTCCTTA
ACCCTTAAGAATATTC Coding sequence (CDS) from alignment at sc0000059:261847..263812- >TCONS_00005758 ID=TCONS_00005758|Name=TCONS_00005758|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at sc0000059:261847..263812- (Clytia hemisphaerica)
CTATTTGTGCCATCACCGCATTAGTATACGGATCAGTGGCCGAAGACCGG
ATTTTCGATGCAACGGGCGCTTCTATCAACAAAATCTACACTTTCTATGT
AGCCTGTGTGACATGTTTTTGTTTGGGTGTAGCCTGTATTCTCATCCTCT
GTACGCGATGTATGCGAAGAACCAGTATAACATTAATCGTTTGACTCGTG
TTTTGGACATAGCTCTGATCCTTTACTCCATCGCTTCCATTTGCTGCTTC
TTTTCGGTCGTGATACACATTCTTATCTTGATTCGAAGTCCGTATAAAAC
CTTGACCGGATACGTAACGTCCGTCTTCACTTCCACTTTTGTTGCCGATG
GCTTGTTATTACAAACATGGGTTCGGTGTCTCTTTTGTCTTACTCTTACT
GTCTTTGGTTGGCTCACTAGCCTGTGTTTTCACGACCAATTGGATTTATG
ATGGTGAAAAGGGGCTATTCAAAGGGTTGATTGCTTTCAAAGGAGATTGT
GATGGTTGTGTGGAGTGGGAACCAAGAGATTCACTCTTCAAGTTCAAAAA
CAGGAGAACTATTTGTGCCATCACCGCATTAGTATACGGATCAGTGGCCG
AAGACCGGATTTTCGATGCAACGGGCGCTTCTATCAACAAAATCTACACT
TTCTATGTAGCCTGTGTGACATGTTTTTGTTTGGGTGTAGCCTGTATTCT
CATCCTCTGTACGCGATGTATGCGAAGAACCAGTATAACATTAATCGTTT
GACTCGTGTTTTGGACATAGCTCTGATCCTTTACTCCATCGCTTCCATTT
GCTGCTTCTTTTCGGTCGTGATACACATTCTTATCTTGATTCGAAGTCCG
TATAAAACCTTGACCGGATACGTAACGTCCGTCTTCACTTCCACTTTTGT
TGCCGATGGCTTGTTATTACAAACATGGGTTCGGTGTCTCTTTTGTCTTA
CTCTTACTGTCTTTGGTTGGCTCACTAGCCTGTGTTTTCACGACCAATTG
GATTTATGATGGTGAAAAGGGGCTATTCAAAGGGTTGATTGCTTTCAAAG
GAGATTGTGATGGTTGTGTGGAGTGGGAACCAAGAGATTCACTCTTCAAG
TTCAAAAACAGGAGAACTATTTGTGCCATCACCGCATTAGTATACGGATC
AGTGGCCGAAGACCGGATTTTCGATGCAACGGGCGCTTCTATCAACAAAA
TCTACACTTTCTATGTAGCCTGTGTGACATGTTTTTGTTTGGGTGTAGCC
TGTATTCTCATCCTCTGTACGCGATGTATGCGAAGAACCAGTATAACATT
AATCGTTTGACTCGTGTTTTGGACATAGCTCTGATCCTTTACTCCATCGC
TTCCATTTGCTGCTTCTTTTCGGTCGTGATACACATTCTTATCTTGATTC
GAAGTCCGTATAAAACCTTGACCGGATACGTAACGTCCGTCTTCACTTCC
ACTTTTGTTGCCGATGGCTTGTTATTACAAACATGGGTTCGGTGTCTCTT
TTGTCTTACTCTTACTGTCTTTGGTTGGCTCACTAGCCTGTGTTTTCACG
ACCAATTGGATTTATGATGGTGAAAAGGGGCTATTCAAAGGGTTGATTGC
TTTCAAAGGAGATTGTGATGGTTGTGTGGAGTGGGAACCAAGAGATTCAC
TCTTCAAGTTCAAAAACAGGAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005758-exon-sc0000059-1575043694:263580..263812 | TCONS_00005758-exon-sc0000059-1575043694:263580..263812 | Clytia hemisphaerica | exon |
| TCONS_00005758-exon-sc0000059-1575043694:263041..263193 | TCONS_00005758-exon-sc0000059-1575043694:263041..263193 | Clytia hemisphaerica | exon |
| TCONS_00005758-exon-sc0000059-1575043694:261847..262609 | TCONS_00005758-exon-sc0000059-1575043694:261847..262609 | Clytia hemisphaerica | exon |
| TCONS_00005758-exon-sc0000059-1510915933:263580..263812 | TCONS_00005758-exon-sc0000059-1510915933:263580..263812 | Clytia hemisphaerica | exon |
| TCONS_00005758-exon-sc0000059-1510915933:263041..263193 | TCONS_00005758-exon-sc0000059-1510915933:263041..263193 | Clytia hemisphaerica | exon |
| TCONS_00005758-exon-sc0000059-1510915933:261847..262609 | TCONS_00005758-exon-sc0000059-1510915933:261847..262609 | Clytia hemisphaerica | exon |
| TCONS_00005758-exon-sc0000059-1491911889:263580..263812 | TCONS_00005758-exon-sc0000059-1491911889:263580..263812 | Clytia hemisphaerica | exon |
| TCONS_00005758-exon-sc0000059-1491911889:263041..263193 | TCONS_00005758-exon-sc0000059-1491911889:263041..263193 | Clytia hemisphaerica | exon |
| TCONS_00005758-exon-sc0000059-1491911889:261847..262609 | TCONS_00005758-exon-sc0000059-1491911889:261847..262609 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:261847..263812 - |
Blast
The following BLAST results are available for this feature:
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