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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005742 ID=TCONS_00005742|Name=TCONS_00005742|organism=Clytia hemisphaerica|type=transcript|length=382bp
Gtgataaaaagtttattttctgtttatcttctttattttcaatcttcact
tttgaacttttttttagaTTATTTTCTCAGTAATTATGATGCTTTACAAC
GTTTGGCAAGACGAACTGAAGCATTTGTCGAAAAATGATTTCAATTGGAA
TGCAGGAGCCCCATGGGTTTTCAATGATGGTGTCGGGCGTTGGAAACATC
CGCCACATGCCGTTAACACAATTGAAGATCAAAGGACGCCCTTCTACAAC
AAACCCACGCTGGCAATCTAAAATACACAGTGACCGCCCATTCTCACCAT
GGGTGTAAGAACACACCCAGCGCCCGTTTTGAGGTGTGACTGGTTTTTGG
CATGTATTTGGCGTTCCGAGGAGAAAGGTCCC Run BLAST on NCBI transcript from alignment at sc0000059:647475..650199+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005742 ID=TCONS_00005742|Name=TCONS_00005742|organism=Clytia hemisphaerica|type=transcript|length=2725bp|location=Sequence derived from alignment at sc0000059:647475..650199+ (Clytia hemisphaerica)
Gtgataaaaagtttattttctgtttatcttctttattttcaatcttcact
tttgaacttttttttagaTTATTTTCTCAGTAATTATGATGCTTTACAAC
GTTTGGCAAGACGAACTGAAGCATTTGTCGAAAAATGGTAAGCTAAATAA
AAGGACCCTAACAAGTTATTTTATTCCCAAATGTATTTAATAGTTCTTTT
AGCAATTTACCAATTTTTCTCCATTAGTTAGTTTacagaatttcattttt
agtcTTGTCTTGATAATAATGCAGTAAAGGCTATCGAAACAACGACTTAT
TTTAAGATCATCGTGTTATTCTTTTTCtgatttgaatttcaaattttaaa
gatgcacctttttggaatttgttttcTTCTAAATATTGCACACTTATAGT
GACTATACACCACCATCCCAATCAACAGTGTTCaataaaaaattctgaaa
gagcTGATTTGGGAAAGGTAATTCTCACCAAAAAgtatatcttttttcaa
atctACCTGTAGTATTGGATGTAGATCGGTGTGAAAAAGTCTAGTTTAGA
TAGCTAGCTTTAGTTTAAAAGTTTAGCTAAGAGAACCATTCACCCATTCA
cacaagtgaaaaagcccattcgcTCATTCACGCATACCGTTGGGGGCCCA
ATAAAAGTcgataataaagaaaaaacaaataaaagtgGGTGAAAGTCGAA
AGTTTCTTCTATTTTCGGTGTCAAAAAGATTCGTCGGTCAATTCAGGTGT
CAGGGAGGGGCCCTCTTCACACCCGCGTTATACATAACacctttttttat
gagaacaactatataagaacataaggcttcgatggccaaaatgttaagaa
caagttaagaccATTTTAAGCCTTCGCAGACTCTAACaaacccaatttct
taagaaaagggacaaaaatactcaaaaaatggcgaaaataagaacacgtt
aaagaacattcttaggcttaaaactcaaaaagtctagaaCACTCTAAGGC
AACATTCttttgggtgttcttataaaagaaagtgtaGGTAGACAGTGTAG
TGTTAAACAAGTGGGAATTTCTCTCTCCCCATTCCTTATGGAGAATTAAT
TGGTTTCATCCGTTTCTAAACGCCTTCTTTtctgggaaaaatcaaaatat
aatagccgcattctttttcaccgtccaacaccttcttttcttttgttctt
actTCTATATAATATGAGATAATGAGGCACACTGTTAAGTATGAACATAT
ATacacccttttttataagaacaattctatAAGAACATTGTGGCTCAGGA
TCGttagaaataagaacaatttatatAAGCAATGCCAAAGCCTgacaaca
cccccttctcacagacccattgggaccccttcccactggaaaaattggac
aAAATATCACCCCCGGAGGAAAATTATCCTTCaacttttgtccccactga
aaataattaaagAAACCAATCCtgactgcaaaatattatgttatttttcc
catccccactgaactATCTGACCTAAAAACACAAGAATTGatatccccag
ccataaaacatatgggaatatcaatccccatcagtttcagtccgttagtt
ttatccccactggttgaaaaaatcctaccgggtctgtgagaatgggGTAT
CTGACAGAATTCCAAGCATTATAAGGACTAAACTATTGAAAATCGGGTAT
AAAGCTTAAAAAAACCCAAATGTTACATTAAATAAACAGCATAAGAAGAA
CAGAGCCAAAAAATATGAACAGTCGAGTCTAACCAAAAAAACTCACTATG
GTCCTGATAGAAAAGTGGGAGTTAAAGCAATTTTGAATGATATATACGAG
ATATATATACGCGAGatatatttcaaataaattACTTCTAGGAAATTATA
CAATTGAATAAATCATGACAAAGCTAAAATGAATTTTCTCTCTTGAAAAA
TCGCGTCGTAGAGTGAGAGAGGGTATAGTAATATTGTGATTTTTATGAAt
ttagtgactgaatcaaaccaTTATGTCAAAATTGAATTTAGTACAGCGGT
AATAATTTGGCCAGTCGACAAGGTTGTTCTTTTTAGatatgaaaaattga
ttttgtgtcgtaaaattctttttagaaaattttttcaaatttcttttaga
aaatGACTCTtgattcataatttttttcagaaaattttcaaaaaaacaat
ccTAGGAGATTCATATCTGTATTTTGGCGTTTTTACAAATTAGAGCTCTA
ATCTGAATGCAAGCTGCAAATGTGTTGGTTTTTGCCAGACCCAACAACAT
ATCAGTCTTTTGAATGGGCgaaggaaaaatcaaaatatattttgttacAA
GAAGAGTTTTTCGATATCGTCAAGTGAAACCGTTTTTTCTGATGCTTCTC
TTTTCGGAATTTCAAAGTTACTTTTAGTGCGTGTGTCCAATGATCGTTTA
AAGTCATCCATACTCATTTGTGCTTTGTAGATTTCAATTGGAATGCAGGA
GCCCCATGGGTTTTCAATGATGGTGTCGGGCGTTGGAAACATCCGCCACA
TGCCGTTAACACAATTGAAGATCAAAGGACGCCCTTCTACAACAAACCCA
CGCTGGCAATCTAAAATACACAGTGACCGCCCATTCTCACCATGGGTGTA
AGAACACACCCAGCGCCCGTTTTGAGGTGTGACTGGTTTTTGGCATGTAT
TTGGCGTTCCGAGGAGAAAGGTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005742-exon-sc0000059-1491911889:647475..647611 | TCONS_00005742-exon-sc0000059-1491911889:647475..647611 | Clytia hemisphaerica | exon |
| TCONS_00005742-exon-sc0000059-1510915933:647475..647611 | TCONS_00005742-exon-sc0000059-1510915933:647475..647611 | Clytia hemisphaerica | exon |
| TCONS_00005742-exon-sc0000059-1575043694:647475..647611 | TCONS_00005742-exon-sc0000059-1575043694:647475..647611 | Clytia hemisphaerica | exon |
| TCONS_00005742-exon-sc0000059-1491911889:649955..650199 | TCONS_00005742-exon-sc0000059-1491911889:649955..650199 | Clytia hemisphaerica | exon |
| TCONS_00005742-exon-sc0000059-1510915933:649955..650199 | TCONS_00005742-exon-sc0000059-1510915933:649955..650199 | Clytia hemisphaerica | exon |
| TCONS_00005742-exon-sc0000059-1575043694:649955..650199 | TCONS_00005742-exon-sc0000059-1575043694:649955..650199 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:647475..650199 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000436 | Sushi_SCR_CCP_dom |
Blast
The following BLAST results are available for this feature:
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