TCONS_00005724 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005724
Unique NameTCONS_00005724
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length290

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005724 ID=TCONS_00005724|Name=TCONS_00005724|organism=Clytia hemisphaerica|type=transcript|length=290bp
TATGTAAAACCTTCTTCAAATGCACTAATGGAAGAATGGAGCTGGAACGA
GCAAATAAAGAATGGTTGACGTTcattcaaaaatggttgaacaCACTGAA
AAAGAAACATGTTCTTTCGTTAAACGTACTTCAACAATTCGAAGATAAAT
CTCCGTTATTAGAAACTCACTTGAAGGCAATTTCATCTTGGCTTAAGAAT
AATGGCATCAAAGAAGCAACTAAATGTTTACCAACTGTCGGAAAATTATT
AGCTGGATTATCCAAGATTTGTCTCGTCCTCGCTAAAGGT
Run BLAST on NCBI

transcript from alignment at sc0000059:211528..212352+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005724 ID=TCONS_00005724|Name=TCONS_00005724|organism=Clytia hemisphaerica|type=transcript|length=825bp|location=Sequence derived from alignment at sc0000059:211528..212352+ (Clytia hemisphaerica)
TATGTAAAACCTTCTTCAAATGCACTAATGGAAGAATGGAGCTGGAACGA
GCAAATAAAGAATGGTTGACGTTcattcaaaaatggttgaacaCACTGAA
AAAGAAACATGTTCTTTCGTTAAACGTACTTCAACAATTCGAAGATAAAT
CTCCGTTATTAGAAACTCACTTGAAGGCAATTTCATCTTGGCTTAAGAAT
AATGTAAGAATTTCATgctttcatttcaatttcattcaacatttgttccc
ttctttcaaattttcagctttgaaaaatgtaaaaactgcAAATGCAATGC
AAtataaatttttctaaaaatgagttTTATTGGCTTTTTTTAGAATTCCT
TCTTTCATGGTCTCTTGCTAAATgtccaaaatttttagaaaatagtaaga
aaaaagtttttctcggGACAGGCAATGTTCTATGTGTCAAAGTGGCAGAT
TATTATAGCATTTTTACACTTCTGTGTCAcggacccgctgggaccccgcc
ccattgggaaattgaccttgatttcatccccattggaaATTCAAGGGAAA
AATTGCACTCTTAAACCATCCCCATTAGACTTTTCACAATCGAATTGAGA
TTCTGATAGATATAAAAATTAATCCCCACTGTAGAAATCATTCTCAGCGG
GGATGTGATACAGGGGTATATTTCTTCCTGAAAACTAACAAAAAATAGAG
AAGTTTAAAATGTTGTAGCAACTTTGGTTAATTTTTAGGGCATCAAAGAA
GCAACTAAATGTTTACCAACTGTCGGAAAATTATTAGCTGGATTATCCAA
GATTTGTCTCGTCCTCGCTAAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003248XLOC_003248Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005724-exon-sc0000059-1491911889:211528..211730TCONS_00005724-exon-sc0000059-1491911889:211528..211730Clytia hemisphaericaexon
TCONS_00005724-exon-sc0000059-1510915933:211528..211730TCONS_00005724-exon-sc0000059-1510915933:211528..211730Clytia hemisphaericaexon
TCONS_00005724-exon-sc0000059-1575043694:211528..211730TCONS_00005724-exon-sc0000059-1575043694:211528..211730Clytia hemisphaericaexon
TCONS_00005724-exon-sc0000059-1491911889:212266..212352TCONS_00005724-exon-sc0000059-1491911889:212266..212352Clytia hemisphaericaexon
TCONS_00005724-exon-sc0000059-1510915933:212266..212352TCONS_00005724-exon-sc0000059-1510915933:212266..212352Clytia hemisphaericaexon
TCONS_00005724-exon-sc0000059-1575043694:212266..212352TCONS_00005724-exon-sc0000059-1575043694:212266..212352Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:211528..212352 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.000992881	0	28.9935	12.3539	13.4811	9.53431	15.2266	8.08726	7.28536	0.883918	3.19579	2.03086	0	7.67888	10.633	9.49681	9.73392	5.10094	9.21978	5.90481	0	13.0045	12.2777	10.3039	13.376	4.1871	1.91511	7.26272	11.346
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005724 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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