TCONS_00005723 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005723
Unique NameTCONS_00005723
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2175

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005723 ID=TCONS_00005723|Name=TCONS_00005723|organism=Clytia hemisphaerica|type=transcript|length=2175bp
aaattcgagccgttactagcaaccctgcggggcccaaggcgccgagtatg
cacccggcacagtgacaagccgttactagcaaccctgacctaagcNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaccctacctaact
gttagttaatcaattccaaacaacaaaacccctggaaaatttaaaatgtc
ggaatgagcaatagacaaccttcttttgagaccttgtaattatccttttc
ctagcactgaaaaaaagatttttttggaatTCTCCAAATTCTtaatttca
gttttttggtGCCTTGTCTTCCAGTCTCTCAATTTAAAGccatttttaaa
gaaaaaagttttttgaaaccTTATATCACAAAGAATCAATGACCCACACT
CATCACGACACTTCAACTCACTTCATAGAAGGCATCAGTAATGATCTTGT
CTTCCTTCTCATTGGCCCCACAATCTTTGTCACATTAGTGatcattgttt
tgaaaatgtttcggTCATCCAGAGATATCCATCCAAGACATTTGGAACTG
GTTCAAGAAATACGGCAACGTGTTTTAGAAGCGAGAGGTGAAACACCTGA
ACAGCATCCCTCGCATCGAAATGCTGATGACAGATGCCCTATTTGTATTG
ATGTGCTGAAATTTGCAGTTGAAACTAATTGCGCACATATCTTTTGTTGT
AGCTGCATAATTTCTTATTGGGAGCATGGATCATCAATGTCGGCAATGCA
ATGTCCTATATGTAGACAAGAGGTTCGAGTGTTGCTTCCAGATTTCACCC
ATGAAGAAGAAATATCAGACAACGTCAATGAGCAAACCAATAAAATCAGA
TTGTATAATCGAAGGTTCTCTGGAGAACCAAGACCGCTACTGGAATATAT
ATTGGATTTCCCTGTTCTCCTTCGCCACATGTTCCGTAATTTCTTTAACG
TTAACGGGCTTGTTGCAATGTTACGAGTCCGAATTGTCGTGTATCTAGCC
ATCGTTGTGTTATATATTCTCTCACCGTTGGACATCATACCAGAATTTGT
GTTCGGTATTTTAGGTTTTCTAGATGATGTTGCCATTGCTGGAATTATAT
TGTTATACTTGACTGTTCTTTTTCGACAAAGTTTAGcgaatcattaaaat
tttagaaaatattttaatattattGTATGATTAGTAGCGGGTCGGCTCTT
AGATTAGTATCTGTGGCACCTTTCGTGGGACGCAACCGCATGTTATTTCG
AAAGTACATAGGATTTTGGATTTTAGTGAGAGGGGACCCGCGAATTAGGA
TTTTTATGGTCAACAGGGCAACGTTTCAGACAAAACTTCTAATCCCTAAG
TAGATAAAAAATAGACTTATAATGGCAATTTTAAGTCCAAAATTCTATTT
GCCACGATCCTAAGGCGGGTTGGCCCCTAACAAGATGAAGTTGTTATCCA
TATAATCTTTAGCGTTCTAACTATTTATTACATTACCCACATCATATATA
ATTCAGTTTTAACAAGACctcataggcggttttagaccatgtcgaactta
tcagaggaagagatttgtaattgtaacttcattgtcttttaacaagtgtt
gcactccttcgcatgtttccgacgtacttgcttcATTGTCTTAAAGCCGC
CATTGAACCTGAAGATAGGATATCGATAAAGAAGCTTTACTTTGATTTGC
ATCTTCTTCTTTACCAGTGAACACTTTTGATCCAAATGCTCCAATACATA
CAATACACcatttcgaccgtagccgccaattgccgcgcgggcattttttt
gtccgttttaccaccctaaaaccgtcccagtcgttttttcgcacctataN
NNNNNNNNNNNNNNNNNNNNNNNgccgccaattgccgcgcgggcattttt
ttgtccgttttaccaccctaaaaccctCCCAGTCTTCTTTTTTTCGCTCC
TATATACAGTAAAAAAAGTTGTCAagaaaggattggatcgaggtTAGGGG
GGGGGTGcctgcgcggcaattggcggctacggtcgaaaaggtgttgGAAG
ACCCCTTTGTTACTTTTACCTCTTCATACAGTTTTTTTAGAAATGCGTGT
AAATAAATTGTCAAATTTTTCTAATATTTAGAATATGTTTTATAACAAAG
TTTTTTAACAAATATGAGTTGATGT
Run BLAST on NCBI

protein sequence of TCONS_00005723-protein

>TCONS_00005723-protein ID=TCONS_00005723-protein|Name=TCONS_00005723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MTHTHHDTSTHFIEGISNDLVFLLIGPTIFVTLVIIVLKMFRSSRDIHPR
HLELVQEIRQRVLEARGETPEQHPSHRNADDRCPICIDVLKFAVETNCAH
IFCCSCIISYWEHGSSMSAMQCPICRQEVRVLLPDFTHEEEISDNVNEQT
NKIRLYNRRFSGEPRPLLEYILDFPVLLRHMFRNFFNVNGLVAMLRVRIV
VYLAIVVLYILSPLDIIPEFVFGILGFLDDVAIAGIILLYLTVLFRQSLA
NH
Run BLAST on NCBI

transcript from alignment at sc0000059:196046..211053+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005723 ID=TCONS_00005723|Name=TCONS_00005723|organism=Clytia hemisphaerica|type=transcript|length=15008bp|location=Sequence derived from alignment at sc0000059:196046..211053+ (Clytia hemisphaerica)
aaattcgagccgttactagcaaccctgcggggcccaaggcgccgagtatg
cacccggcacagtgacaagccgttactagcaaccctgacctaagcNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaccctacctaact
gttagttaatcaattccaaacaacaaaacccctggaaaatttaaaatgtc
ggaatgagcaatagacaaccttcttttgagaccttgtaattatccttttc
ctagcactgaaaaaaagatttttttggaatTCTCCAAATTCTtaatttca
gttttttggtGCCTTGTCTTCCAGTCTCTCAATTTAAAGGTATGTATCGT
TGCAAATTTTCTTTGTACTTTTCAAGTAACCCATATTTCAATTGTCAGAA
CTATATGGAAGGAAACGAATTTGCCATCAATCGTAAAAAAAGGGGTTAAT
TAcaacgacccacggcatggcccgaacatgttcgggcctcttgattaata
ctttttaaaaaatggccCGCGCGTGGCCCGCGCAGGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgg
acccaatatttatattttaaattccttattttagcaaacaaatttaaaaa
tcttcatctttattcaaatatatattgttcaaatataaaagttaatcaac
tattttccaattaagttaggaaaattattaaaagaatgatttgaatctta
aataatatggtcttctttttattctttatcccgttcccttttctcgtggt
cttctcctattcgaagcagaatttttctggatcgttttttgtactgttat
acaactttgcgaatcaaactggtatttggaaccgTGAATCGGATAGAATT
GGAAGGTTATGGGCAAATTGCATCTTCAAGACGAAGCCTACCACCTAACT
AAACCGCAGAACTTGACGAGTGGGGTCTAATTCGCGAgtgtagaaaattt
cattttcaaaagttttttctacgAGGAACAATCTTCGATCGAATACAAGA
AAATCGAGTCACTCGTTTCGGGGTGAAGTGGATAGAATTTGACGGGGTGC
CATTcgtaacataaacaaatacTTTCTATATTCTGTGGTGGAGcaatacc
atttttcaaaaagtacgttTTGCCGaagttttaatttcaatttataCGAT
TTTCACTAACTAATTACTGGTATTCATTAGATGGAGCGTCATAATNCAAT
TTATGCAATTTTCACTACCTAATTATTCATTAGATGGAGCGTCAAAAAAA
TGTAATACCTAAGGGATATCTATTTTGGGTAGTACGTTAAGTATCATTGA
TAATAAAAGTTTAATTAGTGTGCACTATGAAAAGTGTTGGTTGAGGAGCA
CGATAGAAAGTGCGatgtaagaaaatgaaaatctctTTTACCCAAATCAT
AGGGGCTACAGTGGAGAGTGGGTACCTTGGGGTATAGACAGGCAGCTGAC
GACATCTAAAATCTGGACGACTTTGGGACAAACGTcgagttgatttttct
tgttcccatatatctactgatcctaaaaattttactcggcgtccgaaaat
ttatttaacgGACATGCCCGGTAgtaatttgtcaaatgatgacgtcacca
ccaaaagtgaaaatttgatttcagcatATAATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTTTCT
GACTCTCTAAACTATAAAGATTTCTAAATAAGTACTCAATATTTGTCCCT
CGAATTTTCActgattcactttttttgatgtcatcagctgcctgtctagT
AGAGTGACACAGACATTGAACGCAATATAGTAGCGTTTCAAATAAATATG
GGGTTAAGGAGGGGGGAAGGCGAACCAAAATCATTAACGAGGAACAAGTT
GCTGgtttaaaaaaggattggattcaACAACCCTTAgcaggacaaatttg
accaagtttgaacaaatttcgatcttttagggggtagaaagttgaaattt
tcctatttttccgaccctcagtgggactgaaatttaattttctgattttt
ccgacccttagcgggactttggaaatccaaaaaagctacccttttaaggg
cggcacataccgtaccctccattttcCTAAATACCCCCACCCCCGGGTGC
AGAAAGCACGCTGAGAGAACGCACAGTTGGAAATTAGATAAGCGAGACAA
GAAAGATTTATATTATTATAACTCAGAATCTTTTATAATCAATCGAATTT
GTTGATCTATAACTTGACAACCGTAACTCGGCCCtattgaagaaagaaga
aaagtttcaatttcgattttggaTGTAAGTATCAGTTCAAATATGATAGT
ATCGGTTCAAATATGATAGtatctttttaaatgagatagtaggcttttaa
acgaagatagtatcgttttaaaaagatagtatgtttttaaacgaagatag
tattgtttttaaacgaagatagtatttttttaaaaagatagtatgttttt
aaacgtagatagtattgttttaaaaagataatatcgttttaaacaagata
gtattgttttaaacgagatgctattgttttaaacgagatgctatcgtttt
aaacgagatagtatcgttttaaatNaaagatagtattgttttaaacaaga
tagtattgttttaaacgagatgctattgttttaaacgagatgctatcgtt
ttaaacgagatagtatcgttttaaactaaagatagtattgttttaaacga
gatggtgttgttttaaaaagatcgTATTTAATGGTGCTTCCGTGCGCCAT
AGCCTCAAGCCCACACTAGTTATATAAGAAGAGGTGAAGGCTGCTCAAGA
GTATCATACTTTTTTCCCTAAAATCCCAAATCCCAGaatcgggccatgcc
gtgggtcgtccTTTTCCAGTCTGGCTGATGGAATTCAATGTTATGTTTAC
CGTAAGCCGTCCGCGTGTTCAAAAACCTGCCGCatcaagttgtcattatt
tgccattttctcgaaaagttgtcattatttttcctcCCACTTGAGCAGAG
AACAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNACTTGAgcagagaacaaaaattttcgaagtt
gatatcaaaacaaacggcccgtgGCTTTTTTAGATTGTTAACAACCCGAA
CGGCCCTCTAGTAGTCTTTACTgtgtgaatttaattttgtcatattgtgg
agataaaattatataattctctagcgggaagaaaaagatttatctcttta
agctttaatcaataaaaacacgaGGATTGTGTATCTAtaaggaaaaacga
aaaatctggtaaaaataaatgtttatgggaaaataatgaataatgaataa
tgaaaacttggccGCATTGAATTCTGAAAATCGTTATTACGGTAAACATA
TCATTAATTTCCATCAGcctctgggaaatcctctcaaattgcacgcttat
gttccgaggccgtaagcgcgcaattgcacggttatcaaaatggcagaatt
tttaagcgtgtaattacacgcttatcaAAATTGTTCTGAAACAGGCGGTA
AgcggtaagcgtgcaattgcacccTTTGTTATTCTGACACGgaattcctt
ccgaaagctctgttgaatttcaaaagcctagggcagttttactcaaaatt
tatcgtagaacaagattccgtaaaaatggattgcccgttaaaccatgcct
tcgcccgaattagagaattctgaaccccttgaaatccctaagcaatttca
accgggcaggagcgggcgtaaattataaccatgcaattgcgcacttacgc
cctcggaacataagcgtgcaattgagaggatttcccagactgttttcgcc
tttccatccgccatattgaattgtatgcaaaaattatggtggccgaattg
ccgtggtgaaattcccttagaaagtatgcaaaacatatgcaaaaagaaag
tattaatatgaaacttacatgcataatttgcattatattaaagtgtaatc
ttgtagaagaaagattaaatttgcttctcttgaaaactaaaaacaattat
attcattcatctcttagaacacgcacttcaaaagaccataatattagaca
taaactcaaactgaaatcacccgcgaaggtaaaaaataatccttattcgg
ctgacggtaaattattctcctgggaatagagccgccaaatgatcaaatca
aaacattgatgatGTGTGACATCATAATTACTGCtagggtagggcgtcaa
cagccatttttggggcaaagtcaaaaaaatcaagatgtagtgttttttta
tgaaaatttaacctattgtgaggcattctgcacaatttttaaggtcagaa
gtctaaaattgaccgaacccccctgggggtactgattcgcactacaggca
aaaattggaaaaaatggcattttctggacttttcaggcctgtaaatttgt
caaaactatttcaaatcttatttttttcatttgctgtactaaattttatg
aagaaacaacaaaataatcatattgtgttgaaaattgtgcccattggaac
cctaaacgagccgttttaagccaattttgggttttgggtagcaaaatgct
ttttaaggccaattttgcaagtacataaactttaaactgattaattcaca
tgtctgaaattttcagagatggaagtctccaataaagtctttaagcaaaa
tgaatttcaagtttttcacttttttcaaaaattcataatggcgttttcaa
aaatcactttttagcaaaaacaaattatatttatcaaaaaatagcatttt
ttaaggcaagcttctacaaactgagtttaaatgaagactgaatttttttt
ttgcagtgatagtattctggagatactccaggaaaatcaaaatcatttgg
gtctgggatgcgtctatgtccgccattttggaaataaaatccctgNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNt
tttttcttcataaaatttagtacagcaaatgaaaaaaataagatttgaaa
tagttttgacaaatttacaggcctgaaaaggccagaaaatgccatttttt
ccaatatttgcCTGTAGTGCAAATCAGTACCCctaggggggttcggccaa
ttttggacttctgaccttaaaaattgcgcagaatgcctcacaataggtta
aattttcataaaaaaacactacatcttgaattttctgactttgacatttg
acgccccaccctattactgctttcagtttgcgtgttttgaaagtttgatg
tgtggagttttttaatggcatgaaaacaacATATGCtgtgtctttaagaa
caaatttctaaaaggcttttgttattctgtaaatatttctttttggatta
aaaaattccatcttttattcttctaatgattataatattcatttataaga
tgctttgctgtctttttaatctttgtgtaaacttgcatatgttttgcata
ctttccaactaaatccaaccacaacattaaaaggtctattcccgagttaa
aaaaggaaaaataacttGGATAGTTTATATATAAAGGAAGCACAATTTCC
GGAgttatgaaatgtaaaatgacCTGTAACTtgggataactcggtttttc
cGTAACTCGGTTTTCTAACTCGGAAagaataactcgggaatttccGGGTC
TCTataatttttataattcgaatgtttttgttcgaaaattttgttaaatt
caaacgttagattcgaacaaaaacattcgacaagttcccgccaaaaatat
gcacatcaaaataaagaaatattttttcaatccagaagcttcaaaatgca
ggagatttttcagagatgtgaaatTATTATATATACATTACAgttaggag
catttggcgagttTATGTACACGGccgcaataaaaaaaatcataacatca
ctCATTAAAAAGTGGCGTTTGTgtctttttgcactttttttagcctagac
gatgtagcaaacatagtaagtataagcacactgtgcttttaattggctga
aatttttttttgcgtcggaaaaactttttcaaactttcagcaatgattga
ccaaactttaacaataaaaattatccagcgcattttttatcttcttacct
tctttaTTTTAAATGAAGCACTGCAATTTTACTGaaggtaagcacataag
atattcttataattaatgatattcattaaAACACGCTTCGTTGTGCGCTA
CGGTGGAGTCCATGACGTAACTCGCATggtaactaactcgccttctgttg
gaagatcatattgggcgttttggcgttaccaccctcgaagcagcaGACGC
CCTTGTCTTttcgcaactctttccaccattttagatggccttaacaatag
atccaaaagggcgccataatcttggaagataatttgttttggtctctggc
tttgggaagtagcaatgtttttggttgttttcgatggaaaatggtaagaa
acttaagtttaaaagtgtcatttagtttttactggcttatagaatggcag
gatcctggatggtttccctaactgcaTTATATATatacacagaaaaagaa
gatatattgtattttttcgattgagaagaaattcttcatcattgcgtttc
tctatcagattgataacacttttcgaTGTTTTCATTTCGATGCATGGATG
AGAGAAAATGCATACTGGTTTAAATAGCTATAAATggtctgaaacaacat
ttttgcaacaaaaactaattCGGAAACTTCTAGAAACTTCTTGACTTTCA
ACTATCGTCAAGCTGTAAACGTGTCGAATTTTCGAAATAAGTAGTGAAGT
TATTGTTAaagaattgatgctgaaaagtcaaagacacCGTTTTGTGGAGG
ATTGGGAGAGACATGagagaccttttacaaaaattcctCGTTACCTGGTT
TATAtaatcaaagacattgaatttcccttgttttttaAGAATCAACCAAC
TTTTCATTCTAATAAATTGATTTAATATGCataacactatttatttgatc
tttaacgTCCAGAAAGCATgctaaataaacaaactttttgaggACACTGT
CAACAAGAAGGTACAAATCATGCACCATgccaaaaaatggctaaaaatag
tttttgcaatatcttgcccaaattatataaaaaattagGGAAAATCTCAG
AAAACCTCTATATTAACATTAGAAAGGATAAGAGATGGTTAAAATCACTC
TATGGGGTTAAATGGTCCAAATATTGCTAATTTGTTGTCCAGACAAAAAG
ATTGTCCTGAAAAGGGCCATTTAAGCTTAGTCTATACCAAACCTAGTTTA
AACTAAAGCTGAATGGTTGTTTTAACTCCTGATAGTAAAATGGCCCACTT
TTTACGTTCTTGGCTCCCAAAATAAGACAATAAAGTTGTCCTTAATTTTA
ACCgtgatattttacaaaaaagacaatttatAATAACCAAAATCTGCTAC
CTGAAAATTAATTGTGAACCATTCATACagttttgtgcaaaattttagct
taaaTAAGCTGATAGTTTTGGCACTATTttggaaaagataaaaatggTTG
AATCAGGTTGAATCCTCAGCGTTAAAGCACAAAAAGTGGTTAATTAAAAT
ACATTTGCCTTTAGGACAACAAATTGTCCACGAGAAGGGCCGTTCAACTA
TTTTAATTATATAATTATCTTATGTTTGAGGTATTTCGAGCCTGATTTGT
AAGAATCTTGAAtgaattttagttttaaaattgattttcatgACAATTAA
TTGCCCATACTTTACAACATTTTAGGACAATTTACTGTCCATTTTTGGAC
CTTTTTACGAGATTTTATAATTGGAATCTTGTTGTAGGATAAGGTTCTTC
ATGTGTACCAAATTTTGCACCCTATCAAGACTTATTGATCTTGGATAACT
CTTTTATAACAATAAAACAATATAACAATTCATTGTCCTTTTTAGGACAG
TAGTTCAAAAGCTTATATCTCTTTAAGTATACCTTTTACAGTTACGGGAC
CAGCATGGCTCTGAAGACAGACCTTTTAACTTAACCACAGGTATCAATGT
ATGGCCTAGTAGACATTTATGAGCAGTCTGTAATNGACCAGCATGGGTCT
GAAGACAGACCTTTTAACTTAACCACAGGTATCAATGTAGGGCCTAGTAG
ACATTTATGAGTctgtaattttcaaaaccaGTCAGGGGTGTAAAGATGGT
GCAAAAACAGCCAATTTTTGTACCTTCTTATTGACAGTGTCCTTGAAGAA
AGAAATGAGTTGCTATTAGTTACAAAAAGCTTtactttgtgatttttttt
tcttttaagaatcAAGTAACTTTTCATTCTAATAAATTGATTTAATATGC
ataacactatttatttgatctttaacgTCCAGAAAGCATgctaaataaac
aaactttttgaagagtgTTATAGGAACGATGTAACAGTTTGAATGAGTCA
TGAGTAAAGGTTTTTAAGAAGAAAGTTTCATCTGTTATCTATTTAGTTCT
TATGAAAGAAAATGCGGACGGGtgatgacgaaaaaaaatttcactcggtc
ggtggaccggaaactttttttcttttagggtCGGCCTAAAATAAGAGCCC
ATCAgaatatatagttttttttcgttttccctttatttattccgagagtt
cagttcttcttggctgttttgtttttctcacACTGCTCACACTGCTTACC
CAAATGTTagtcaatttttatttaaagtcgtccTAAAGCCTCATAACAAC
ACCCCCTCTCATTGCATTCTTGATAAATTTTCCGATCCATCGACCATTTC
CAAACTcctaaatgtttttgtttttttttcgatggaaaatggtaacaAAC
TTtggtttacaagtgtcatttagtttttgctgcctgATAGAATTAGTAGT
TTGTGATTTATGAATTAtttgttagcccccaggacttttgaccctagaca
ctttcaaaaaattgatctagtaaaaaagggttttccaatgtaaattgcgt
tcaTTTCTAAGTTtaggataaaatattttgcacactttctataaaaatat
tgtgcCGCATgcaaaaatttttcagattcatgagcttcaatttgagtaat
tgaagccaactattataagctgaattattttaacCCCCAtgttaagtgat
gagattttaggtCCTCCATAGGTCCCCCAAAAGAGTGGTGGTCcagcccc
ctccttttttggGATGATTTTAGggtgtaccccccccccccaaccagTAG
GGCGGGCTGACGCTATGTTatttgttatttatttgttaTGATCTTTATCT
TAAAAAAGCATACCACATAAATAAAAATAGCctgtttggaaaaaaaaatt
ttacctaGATTTTATTGATCAGACCATAATGTACtctttttcagccattt
ttaaagaaaaaagttttttgaaaccTTATATCACAAAGAATCAATGACCC
ACACTCATCACGACACTTCAACTCACTTCATAGAAGGCATCAGTAATGAT
CTTGTCTTCCTTCTCATTGGCCCCACAATCTTTGTCACATTAGTGatcat
tgttttgaaaatgtttcggTCATCCAGAGATATCCATCCAAGACATTTGG
AACTGGTTCAAGAAATACGGCAACGTGTTTTAGAAGCGAGAGGTGAAACA
CCTGAACAGCATCCCTCGCATCGAAATGCTGATGACAGATGCCCTATTTG
TATTGATGTGCTGAAATTTGCAGTTGAAACTAATTGCGCACATATCTTTT
GTTGTAAGTTTTATTTAAATGTcgatatatttttgataattaatttttta
ttcattatattttgattttgattctaTTGTTCTTCTGTGTGGATTATTTA
AGCCTCGTACCAATAGAAGATGATACTATTATGAACTATTTTTAAGAGAA
TTATTAACATTGTTCTTCAAGTGACAACCTTTGAtccaaaaatgtttcaa
attatattatattatatttgttCAGGTAGCTGCATAATTTCTTATTGGGA
GCATGGATCATCAATGTCGGCAATGCAATGTCCTATATGTAGACAAGAGG
TAAACTGGCGTCAACTATGTTTAGTCTCAGGCCCGGCGGAATAACCGTGA
AAGCAGGGCGACTggtcaaaatgagatgaaatttgctagaaatttgagaa
agaaatctcatttgctcaaaagtggagaggctgaagtctccTCAGTCTCC
CCGATTCAGCTGGGCCTGAGTCACAGCTGCACTATTTTCAAGGATTTTCA
GTATATACTGGGGGAGGGgatattaaaaatttaaattgagAATGAGAATT
ACCATATATTTCCAACCACTTATTGATTGCTCCATCGAGCCTATCAAAAA
GTGGACCTGGGGCTAGGATTTAGGAAGAAGGCTAGTGCAATCATATGGTC
AAGATccattgagaatttagcttatttcctcgttttttgaaatttggagt
tcgggcgagaaagtcacttttgggctaattgataaatttattcgagtatt
tcaattcgggaggggttcatagacttccaggctatattcagAGCCCTATT
GGaacattcttgaacttttggatccttagatcctaagctcctatgcctaa
tttagagcgcttctgAATcatttgtggttataagatctcctagggatttc
ccttttttctcaaatattacgaccgtGATTGTAAATagaaattgaaagtt
tttataATGACGTTTTACTGCCATATTCAACAGGTTCGAGTGTTGCTTCC
AGATTTCACCCATGAAGAAGAAATATCAGACAACGTCAATGAGCAAACCA
ATAAAATCAGATTGTATAATCGAAGGTTCTCTGGAGAACCAAGACCGGTA
AGTGGGAGAAAATATAAAAGGAAGTTTATctataatgggcttttccagaa
aaaatttgaatatggggggtggaggatataacattttttagaaatttacc
cctccccctcccggacattgtgaattttgaccccccTGGACAGTAGGTCT
GACcgcctggacaagcatcagttgacccccgtgaacattcaaaataaccc
tcaaaccgagcaaaattacccccaaacagagcaagtttaccccctggaca
gggcatactttttagatttttccctcccccccccccggacactatTTCCT
CCACCCCTCCATGTtaggacattttctggaagagcccaatcgtGCACTCC
ACACTCTGAGTGTTACAAGTCTCATTGAAGTATATAAAGAGGCTTTTTCG
TCTCAAGATTCTGCATAACAAACAGACACAATAAACAGTCACTTTGATTG
AATTCCTCAATGATTTCCCAAGTCTTTGAGAATTGAAGATATAAGAGGAA
GTTTGTATATCGTACAGTGGGTACTTTGAGATCCGAGTTTGAAATAAAAG
TTCTCCCGTCTCAGACGAAATTTCGTCTCAGAGAAGTATACAAAGAGGAT
TTTTttcgtctcaaaattctgcaatTTTATTTTCCATATGATTAGAATTT
TATACATACATCGTTTCAtgagtttttgacttttctttgaattttggATT
GGATTAAACAAAGCTCAATAAAATTTGTTGAATTGTGTTTAGAaactaat
tttcactttcatattTTAGCTACTGGAATATATATTGGATTTCCCTGTTC
TCCTTCGCCACATGTTCCGTAATTTCTTTAACGTTAACGGGCTTGTTGCA
ATGTTACGAGTCCGAATTGTCGTGTATCTAGCCATCGTTGTGTTATATAT
TCTCTCACCGTTGGACATCATACCAGAATTTGTGTTCGGTATTTTAGGTT
TTCTAGATGATGTTGCCATTGCTGGAATTATATTGTTATACTTGACTGTT
CTTTTTCGACAAAGTTTAGcgaatcattaaaattttagaaaatattttaa
tattattGTATGATTAGTAGCGGGTCGGCTCTTAGATTAGTATCTGTGGC
ACCTTTCGTGGGACGCAACCGCATGTTATTTCGAAAGTACATAGGATTTT
GGATTTTAGTGAGAGGGGACCCGCGAATTAGGATTTTTATGGTCAACAGG
GCAACGTTTCAGACAAAACTTCTAATCCCTAAGTAGATAAAAAATAGACT
TATAATGGCAATTTTAAGTCCAAAATTCTATTTGCCACGATCCTAAGGCG
GGTTGGCCCCTAACAAGATGAAGTTGTTATCCATATAATCTTTAGCGTTC
TAACTATTTATTACATTACCCACATCATATATAATTCAGTTTTAACAAGA
Cctcataggcggttttagaccatgtcgaacttatcagaggaagagatttg
taattgtaacttcattgtcttttaacaagtgttgcactccttcgcatgtt
tccgacgtacttgcttcATTGTCTTAAAGCCGCCATTGAACCTGAAGATA
GGATATCGATAAAGAAGCTTTACTTTGATTTGCATCTTCTTCTTTACCAG
TGAACACTTTTGATCCAAATGCTCCAATACATACAATACACcatttcgac
cgtagccgccaattgccgcgcgggcatttttttgtccgttttaccaccct
aaaaccgtcccagtcgttttttcgcacctataNNNNNNNNNNNNNNNNNN
NNNNNNgccgccaattgccgcgcgggcatttttttgtccgttttaccacc
ctaaaaccctCCCAGTCTTCTTTTTTTCGCTCCTATATACAGTAAAAAAA
GTTGTCAagaaaggattggatcgaggtTAGGGGGGGGGTGcctgcgcggc
aattggcggctacggtcgaaaaggtgttgGAAGACCCCTTTGTTACTTTT
ACCTCTTCATACAGTTTTTTTAGAAATGCGTGTAAATAAATTGTCAAATT
TTTCTAATATTTAGAATATGTTTTATAACAAAGTTTTTTAACAAATATGA
GTTGATGT

Coding sequence (CDS) from alignment at sc0000059:196046..211053+

>TCONS_00005723 ID=TCONS_00005723|Name=TCONS_00005723|organism=Clytia hemisphaerica|type=CDS|length=3036bp|location=Sequence derived from alignment at sc0000059:196046..211053+ (Clytia hemisphaerica)
ATGACCCACACTCATCACGACACTTCAACTCACTTCATAGAAGGCATCAG
TAATGATCTTGTCTTCCTTCTCATTGGCCCCACAATCTTTGTCACATTAG
TGatcattgttttgaaaatgtttcggTCATCCAGAGATATCCATCCAAGA
CATTTGGAACTGGTTCAAGAAATACGGCAACGTGTTTTAGAAGCGAGAGG
TGAAACACCTGAACAGCATCCCTCGCATCGAAATGCTGATGACAGATGCC
CTATTTGTATTGATGTGCTGAAATTTGCAGTTGAAACTAATTGCGCACAT
ATCTTTTGTTGTAGCTGCATAATTTCTTATTGGGAGCATGGATCATCAAT
GTCGGCAATGCAATGTCCTATATGTAGACAAGAGGTTCGAGTGTTGCTTC
CAGATTTCACCCATGAAGAAGAAATATCAGACAACGTCAATGAGCAAACC
AATAAAATCAGATTGTATAATCGAAGGTTCTCTGGAGAACCAAGACCGCT
ACTGGAATATATATTGGATTTCCCTGTTCTCCTTCGCCACATGTTCCGTA
ATTTCTTTAACGTTAACGGGCTTGTTGCAATGTTACGAGTCCGAATTGTC
GTGTATCTAGCCATCGTTGTGTTATATATTCTCTCACCGTTGGACATCAT
ACCAGAATTTGTGTTCGGTATTTTAGGTTTTCTAGATGATGTTGCCATTG
CTGGAATTATATTGTTATACTTGACTGTTCTTTTTCGACAAAGTTTAGcg
aatcattaaATGACCCACACTCATCACGACACTTCAACTCACTTCATAGA
AGGCATCAGTAATGATCTTGTCTTCCTTCTCATTGGCCCCACAATCTTTG
TCACATTAGTGatcattgttttgaaaatgtttcggTCATCCAGAGATATC
CATCCAAGACATTTGGAACTGGTTCAAGAAATACGGCAACGTGTTTTAGA
AGCGAGAGGTGAAACACCTGAACAGCATCCCTCGCATCGAAATGCTGATG
ACAGATGCCCTATTTGTATTGATGTGCTGAAATTTGCAGTTGAAACTAAT
TGCGCACATATCTTTTGTTGTAGCTGCATAATTTCTTATTGGGAGCATGG
ATCATCAATGTCGGCAATGCAATGTCCTATATGTAGACAAGAGGTTCGAG
TGTTGCTTCCAGATTTCACCCATGAAGAAGAAATATCAGACAACGTCAAT
GAGCAAACCAATAAAATCAGATTGTATAATCGAAGGTTCTCTGGAGAACC
AAGACCGCTACTGGAATATATATTGGATTTCCCTGTTCTCCTTCGCCACA
TGTTCCGTAATTTCTTTAACGTTAACGGGCTTGTTGCAATGTTACGAGTC
CGAATTGTCGTGTATCTAGCCATCGTTGTGTTATATATTCTCTCACCGTT
GGACATCATACCAGAATTTGTGTTCGGTATTTTAGGTTTTCTAGATGATG
TTGCCATTGCTGGAATTATATTGTTATACTTGACTGTTCTTTTTCGACAA
AGTTTAGcgaatcattaaATGACCCACACTCATCACGACACTTCAACTCA
CTTCATAGAAGGCATCAGTAATGATCTTGTCTTCCTTCTCATTGGCCCCA
CAATCTTTGTCACATTAGTGatcattgttttgaaaatgtttcggTCATCC
AGAGATATCCATCCAAGACATTTGGAACTGGTTCAAGAAATACGGCAACG
TGTTTTAGAAGCGAGAGGTGAAACACCTGAACAGCATCCCTCGCATCGAA
ATGCTGATGACAGATGCCCTATTTGTATTGATGTGCTGAAATTTGCAGTT
GAAACTAATTGCGCACATATCTTTTGTTGTAGCTGCATAATTTCTTATTG
GGAGCATGGATCATCAATGTCGGCAATGCAATGTCCTATATGTAGACAAG
AGGTTCGAGTGTTGCTTCCAGATTTCACCCATGAAGAAGAAATATCAGAC
AACGTCAATGAGCAAACCAATAAAATCAGATTGTATAATCGAAGGTTCTC
TGGAGAACCAAGACCGCTACTGGAATATATATTGGATTTCCCTGTTCTCC
TTCGCCACATGTTCCGTAATTTCTTTAACGTTAACGGGCTTGTTGCAATG
TTACGAGTCCGAATTGTCGTGTATCTAGCCATCGTTGTGTTATATATTCT
CTCACCGTTGGACATCATACCAGAATTTGTGTTCGGTATTTTAGGTTTTC
TAGATGATGTTGCCATTGCTGGAATTATATTGTTATACTTGACTGTTCTT
TTTCGACAAAGTTTAGcgaatcattaaATGACCCACACTCATCACGACAC
TTCAACTCACTTCATAGAAGGCATCAGTAATGATCTTGTCTTCCTTCTCA
TTGGCCCCACAATCTTTGTCACATTAGTGatcattgttttgaaaatgttt
cggTCATCCAGAGATATCCATCCAAGACATTTGGAACTGGTTCAAGAAAT
ACGGCAACGTGTTTTAGAAGCGAGAGGTGAAACACCTGAACAGCATCCCT
CGCATCGAAATGCTGATGACAGATGCCCTATTTGTATTGATGTGCTGAAA
TTTGCAGTTGAAACTAATTGCGCACATATCTTTTGTTGTAGCTGCATAAT
TTCTTATTGGGAGCATGGATCATCAATGTCGGCAATGCAATGTCCTATAT
GTAGACAAGAGGTTCGAGTGTTGCTTCCAGATTTCACCCATGAAGAAGAA
ATATCAGACAACGTCAATGAGCAAACCAATAAAATCAGATTGTATAATCG
AAGGTTCTCTGGAGAACCAAGACCGCTACTGGAATATATATTGGATTTCC
CTGTTCTCCTTCGCCACATGTTCCGTAATTTCTTTAACGTTAACGGGCTT
GTTGCAATGTTACGAGTCCGAATTGTCGTGTATCTAGCCATCGTTGTGTT
ATATATTCTCTCACCGTTGGACATCATACCAGAATTTGTGTTCGGTATTT
TAGGTTTTCTAGATGATGTTGCCATTGCTGGAATTATATTGTTATACTTG
ACTGTTCTTTTTCGACAAAGTTTAGcgaatcattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003247XLOC_003247Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005723-exon-sc0000059-1491911889:196046..196384TCONS_00005723-exon-sc0000059-1491911889:196046..196384Clytia hemisphaericaexon
TCONS_00005723-exon-sc0000059-1510915933:196046..196384TCONS_00005723-exon-sc0000059-1510915933:196046..196384Clytia hemisphaericaexon
TCONS_00005723-exon-sc0000059-1575043694:196046..196384TCONS_00005723-exon-sc0000059-1575043694:196046..196384Clytia hemisphaericaexon
TCONS_00005723-exon-sc0000059-1491911889:207540..207898TCONS_00005723-exon-sc0000059-1491911889:207540..207898Clytia hemisphaericaexon
TCONS_00005723-exon-sc0000059-1510915933:207540..207898TCONS_00005723-exon-sc0000059-1510915933:207540..207898Clytia hemisphaericaexon
TCONS_00005723-exon-sc0000059-1575043694:207540..207898TCONS_00005723-exon-sc0000059-1575043694:207540..207898Clytia hemisphaericaexon
TCONS_00005723-exon-sc0000059-1491911889:208121..208194TCONS_00005723-exon-sc0000059-1491911889:208121..208194Clytia hemisphaericaexon
TCONS_00005723-exon-sc0000059-1510915933:208121..208194TCONS_00005723-exon-sc0000059-1510915933:208121..208194Clytia hemisphaericaexon
TCONS_00005723-exon-sc0000059-1575043694:208121..208194TCONS_00005723-exon-sc0000059-1575043694:208121..208194Clytia hemisphaericaexon
TCONS_00005723-exon-sc0000059-1491911889:208879..208992TCONS_00005723-exon-sc0000059-1491911889:208879..208992Clytia hemisphaericaexon
TCONS_00005723-exon-sc0000059-1510915933:208879..208992TCONS_00005723-exon-sc0000059-1510915933:208879..208992Clytia hemisphaericaexon
TCONS_00005723-exon-sc0000059-1575043694:208879..208992TCONS_00005723-exon-sc0000059-1575043694:208879..208992Clytia hemisphaericaexon
TCONS_00005723-exon-sc0000059-1491911889:209765..211053TCONS_00005723-exon-sc0000059-1491911889:209765..211053Clytia hemisphaericaexon
TCONS_00005723-exon-sc0000059-1510915933:209765..211053TCONS_00005723-exon-sc0000059-1510915933:209765..211053Clytia hemisphaericaexon
TCONS_00005723-exon-sc0000059-1575043694:209765..211053TCONS_00005723-exon-sc0000059-1575043694:209765..211053Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005723-proteinTCONS_00005723-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:196046..211053 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.41075	4.16876	14.0843	14.9699	7.88557	6.30203	8.54126	7.9072	6.44961	6.17536	4.93823	3.94977	4.20227	4.10949	5.3368	5.69724	6.43758	6.14494	4.34939	6.13724	4.63546	3.99299	7.52005	6.83553	4.99139	5.41893	4.91266	3.92884	7.25796	7.36768
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR010652DUF1232
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Blast
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BLAST of TCONS_00005723 vs. Swiss-Prot (Human)
Match: RN170 (E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 7.725e-53
Identity = 99/240 (41.25%), Postives = 153/240 (63.75%), Query Frame = 2 
Query:  425 IEGISNDLVFLLIGPTIFVTLVIIVLKMFRS-SRDIHPRHLELVQEIRQRVLEARGETPEQHPSHRNADDRCPICIDVLKFAVETNCAHIFCCSCIISYWEHGSSMSAMQCPICRQEVRVLLPDFTHEEEISDNVNEQTNKIRLYNRRFSGEPRPLLEYILDFPVLLRHMFRNFFNVNGLVAMXXXXXXXXXXXXXXXXXSPLDIIPEFVFGILGFLDDVAIAGIILLYLTVLFRQSLAN 1141
            IEG+S+ ++  ++    F  +  +V  +FR+  ++IHP + ELV+ +R++ L+   + P         D  CPIC+    F VETNC H+FC +CII+YW +GS + A+ CPICRQ V +LL  F  +++ S +V      I  YNRRFSG+PR ++E I+D P LLRH FR  F+V GL  M R+RI++ L     Y++SPLD +PE +FGILGFLDD  +  ++L+Y+++++R+ +  
Sbjct:   19 IEGVSDQVLVAVV--VSFALIATLVYALFRNVHQNIHPENQELVRVLREQ-LQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQ-SQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQ 254
The following BLAST results are available for this feature:
BLAST of TCONS_00005723 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1707.725e-5341.25E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens... [more]
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