TCONS_00005723-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005723-protein
Unique NameTCONS_00005723-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005723-protein ID=TCONS_00005723-protein|Name=TCONS_00005723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MTHTHHDTSTHFIEGISNDLVFLLIGPTIFVTLVIIVLKMFRSSRDIHPR
HLELVQEIRQRVLEARGETPEQHPSHRNADDRCPICIDVLKFAVETNCAH
IFCCSCIISYWEHGSSMSAMQCPICRQEVRVLLPDFTHEEEISDNVNEQT
NKIRLYNRRFSGEPRPLLEYILDFPVLLRHMFRNFFNVNGLVAMLRVRIV
VYLAIVVLYILSPLDIIPEFVFGILGFLDDVAIAGIILLYLTVLFRQSLA
NH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003247XLOC_003247Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005723TCONS_00005723Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR010652DUF1232
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 83..125
e-value: 1.0E-5
score: 35.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 83..126
score: 12.489
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 83..129
e-value: 2.68063E-9
score: 50.522
IPR010652Protein of unknown function DUF1232PFAMPF06803DUF1232coord: 201..234
e-value: 4.5E-8
score: 32.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 53..167
e-value: 5.4E-16
score: 58.2
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 82..125
e-value: 1.2E-6
score: 28.1
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 78..133
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 98..107

Blast
[Close]
BLAST of TCONS_00005723-protein vs. Swiss-Prot (Human)
Match: RN170 (E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 7.530e-65
Identity = 99/240 (41.25%), Postives = 153/240 (63.75%), Query Frame = 0 
Query:   13 IEGISNDLVFLLIGPTIFVTLVIIVLKMFRS-SRDIHPRHLELVQEIRQRVLEARGETPEQHPSHRNADDRCPICIDVLKFAVETNCAHIFCCSCIISYWEHGSSMSAMQCPICRQEVRVLLPDFTHEEEISDNVNEQTNKIRLYNRRFSGEPRPLLEYILDFPVLLRHMFRNFFNVNGLVAMLRVRIVVYLAIVVLYILSPLDIIPEFVFGILGFLDDVAIAGIILLYLTVLFRQSLAN 251
            IEG+S+ ++  ++    F  +  +V  +FR+  ++IHP + ELV+ +R++ L+   + P         D  CPIC+    F VETNC H+FC +CII+YW +GS + A+ CPICRQ V +LL  F  +++ S +V      I  YNRRFSG+PR ++E I+D P LLRH FR  F+V GL  M R+RI++ L     Y++SPLD +PE +FGILGFLDD  +  ++L+Y+++++R+ +  
Sbjct:   19 IEGVSDQVLVAVV--VSFALIATLVYALFRNVHQNIHPENQELVRVLREQ-LQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQ-SQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQ 254
The following BLAST results are available for this feature:
BLAST of TCONS_00005723-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1707.530e-6541.25E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens... [more]
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