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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005715 ID=TCONS_00005715|Name=TCONS_00005715|organism=Clytia hemisphaerica|type=transcript|length=961bp
GTTTATAACCAAAAACCATGAAATAGCACGCCACACGATTAGCCATGAGC
ATTTGCAATTGTACCTGATAATAATACGTGTGATCTCGCTTTAGGTAATA
TTTTTCATCAGATTCATTGAACATCATACAGAATTTTGTATCAGTTTTTG
CTAGGTCTGTAGGAGATTTTTCTTTACATTTGATAGGGCATTTTATTTCA
ATAACATAGCTTTCTTTACAACATGAGCAATCCAGTAATCCATCTGGTGA
AGCACCGAGAAATGGAAATTCACTACTTCTAATTAATCCAGATTCTGTAA
TCTTTGCGTCTCTATGCTCATGGTTAAGATAAACTTCCAGATAGGAGAGG
GCAACTTTTTCATTATCACAGCCATAAGTTGTTGCATTGCTTGTGAATTT
ATGCATTTCGATTTGCGGATAACAAATTTGCATGATTAGGCTTTTCGATG
GCTGTGATACATCTGAATGACAGGCTTGTCTAAATTTACTTGCAGTAATG
ACACCAGCACGTGCTTCGAACCAAAGGTTTGATTTAGCCTGTTCTCTAGT
GTGTTGTTCAATAAGGTTTACATCTTCTTCGGTGATGCTCAAAGATATAT
ACTTTGTAACTGATTCTTGGATTAGCTTAtgatatttaaaattattttca
tcattgTATTTCTTATCATAGAATTTGTTAAACAGAACCCTTTTTATCTT
TGATTTTACCGATATACATTTGTCATTATATGGAGGTATGAGTCTCAAAA
TAGCAATGCTTTGCCCTGTTTCggcaatatttttaaaaaaagagtcTTTC
TCTTCCATTGTTGGTTTTGAAGCCTGATGCTTGGGATACTTTGGAGGTGG
GGGCTTGTTTTCGTTGTTCTGGGAAAAGtcagtttcaaaaaatttcctct
tAGGATCTTTAAAGTTAATCTCTCTCAACGTAGCAAATGGTACTTCTGTA
GCACTAGGGGG Run BLAST on NCBI protein sequence of TCONS_00005715-protein >TCONS_00005715-protein ID=TCONS_00005715-protein|Name=TCONS_00005715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
PPSATEVPFATLREINFKDPKRKFFETDFSQNNENKPPPPKYPKHQASKP
TMEEKDSFFKNIAETGQSIAILRLIPPYNDKCISVKSKIKRVLFNKFYDK
KYNDENNFKYHKLIQESVTKYISLSITEEDVNLIEQHTREQAKSNLWFEA
RAGVITASKFRQACHSDVSQPSKSLIMQICYPQIEMHKFTSNATTYGCDN
EKVALSYLEVYLNHEHRDAKITESGLIRSSEFPFLGASPDGLLDCSCCKE
SYVIEIKCPIKCKEKSPTDLAKTDTKFCMMFNESDEKYYLKRDHTYYYQV
QLQMLMANRVACYFMVFGYK Run BLAST on NCBI transcript from alignment at sc0000054:805457..806417 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005715 ID=TCONS_00005715|Name=TCONS_00005715|organism=Clytia hemisphaerica|type=transcript|length=961bp|location=Sequence derived from alignment at sc0000054:805457..806417 (Clytia hemisphaerica)
CCCCCTAGTGCTACAGAAGTACCATTTGCTACGTTGAGAGAGATTAACTT
TAAAGATCCTaagaggaaattttttgaaactgaCTTTTCCCAGAACAACG
AAAACAAGCCCCCACCTCCAAAGTATCCCAAGCATCAGGCTTCAAAACCA
ACAATGGAAGAGAAAgactctttttttaaaaatattgccGAAACAGGGCA
AAGCATTGCTATTTTGAGACTCATACCTCCATATAATGACAAATGTATAT
CGGTAAAATCAAAGATAAAAAGGGTTCTGTTTAACAAATTCTATGATAAG
AAATAcaatgatgaaaataattttaaatatcaTAAGCTAATCCAAGAATC
AGTTACAAAGTATATATCTTTGAGCATCACCGAAGAAGATGTAAACCTTA
TTGAACAACACACTAGAGAACAGGCTAAATCAAACCTTTGGTTCGAAGCA
CGTGCTGGTGTCATTACTGCAAGTAAATTTAGACAAGCCTGTCATTCAGA
TGTATCACAGCCATCGAAAAGCCTAATCATGCAAATTTGTTATCCGCAAA
TCGAAATGCATAAATTCACAAGCAATGCAACAACTTATGGCTGTGATAAT
GAAAAAGTTGCCCTCTCCTATCTGGAAGTTTATCTTAACCATGAGCATAG
AGACGCAAAGATTACAGAATCTGGATTAATTAGAAGTAGTGAATTTCCAT
TTCTCGGTGCTTCACCAGATGGATTACTGGATTGCTCATGTTGTAAAGAA
AGCTATGTTATTGAAATAAAATGCCCTATCAAATGTAAAGAAAAATCTCC
TACAGACCTAGCAAAAACTGATACAAAATTCTGTATGATGTTCAATGAAT
CTGATGAAAAATATTACCTAAAGCGAGATCACACGTATTATTATCAGGTA
CAATTGCAAATGCTCATGGCTAATCGTGTGGCGTGCTATTTCATGGTTTT
TGGTTATAAAC Coding sequence (CDS) from alignment at sc0000054:805457..806417 >TCONS_00005715 ID=TCONS_00005715|Name=TCONS_00005715|organism=Clytia hemisphaerica|type=CDS|length=960bp|location=Sequence derived from alignment at sc0000054:805457..806417 (Clytia hemisphaerica)
CCCCCTAGTGCTACAGAAGTACCATTTGCTACGTTGAGAGAGATTAACTT
TAAAGATCCTaagaggaaattttttgaaactgaCTTTTCCCAGAACAACG
AAAACAAGCCCCCACCTCCAAAGTATCCCAAGCATCAGGCTTCAAAACCA
ACAATGGAAGAGAAAgactctttttttaaaaatattgccGAAACAGGGCA
AAGCATTGCTATTTTGAGACTCATACCTCCATATAATGACAAATGTATAT
CGGTAAAATCAAAGATAAAAAGGGTTCTGTTTAACAAATTCTATGATAAG
AAATAcaatgatgaaaataattttaaatatcaTAAGCTAATCCAAGAATC
AGTTACAAAGTATATATCTTTGAGCATCACCGAAGAAGATGTAAACCTTA
TTGAACAACACACTAGAGAACAGGCTAAATCAAACCTTTGGTTCGAAGCA
CGTGCTGGTGTCATTACTGCAAGTAAATTTAGACAAGCCTGTCATTCAGA
TGTATCACAGCCATCGAAAAGCCTAATCATGCAAATTTGTTATCCGCAAA
TCGAAATGCATAAATTCACAAGCAATGCAACAACTTATGGCTGTGATAAT
GAAAAAGTTGCCCTCTCCTATCTGGAAGTTTATCTTAACCATGAGCATAG
AGACGCAAAGATTACAGAATCTGGATTAATTAGAAGTAGTGAATTTCCAT
TTCTCGGTGCTTCACCAGATGGATTACTGGATTGCTCATGTTGTAAAGAA
AGCTATGTTATTGAAATAAAATGCCCTATCAAATGTAAAGAAAAATCTCC
TACAGACCTAGCAAAAACTGATACAAAATTCTGTATGATGTTCAATGAAT
CTGATGAAAAATATTACCTAAAGCGAGATCACACGTATTATTATCAGGTA
CAATTGCAAATGCTCATGGCTAATCGTGTGGCGTGCTATTTCATGGTTTT
TGGTTATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005715-exon-sc0000054-1491911889:805457..806417 | TCONS_00005715-exon-sc0000054-1491911889:805457..806417 | Clytia hemisphaerica | exon |
| TCONS_00005715-exon-sc0000054-1510915933:805457..806417 | TCONS_00005715-exon-sc0000054-1510915933:805457..806417 | Clytia hemisphaerica | exon |
| TCONS_00005715-exon-sc0000054-1575043694:805457..806417 | TCONS_00005715-exon-sc0000054-1575043694:805457..806417 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:805457..806417 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004518 | nuclease activity |
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0004518 |
nuclease activity |
Blast
The following BLAST results are available for this feature:
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