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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005710 ID=TCONS_00005710|Name=TCONS_00005710|organism=Clytia hemisphaerica|type=transcript|length=2183bp
aaGTACTGAAGCTCAAAAAGGCAGGAAAGTATAGCAACAGACACAAAGGA
TCCTGCAACCGATGCAACTCCAGCCATCAGTCAGGGAGATGCCCAGTAAA
TGGCAAAGAATGCTTCACATGTGGTGGGAAGAACCATTTTGCCAGGACTC
CAATTTGTCCTGGAAAGAAGACAGTCAAAAGAATCAACTCAGATTACTTT
ACAACATTGAAGCGAAATGAATCGAACCAAGAACCTACTGTACTTACTGC
CATAAAAAGAAGGTGACTAAGCCAGCAGACAAATGGGTCGACGTCAAGAT
AGGCGGCACAAAGCATACCCTCTTTGCAGACACAGGTAGCCAGCACACCA
TCATCACACCTGAACACTACAGCAACGCCATGGGACCCCTGGAAGAGCCG
GACATCATACTCAGGGCATGAGGATCTTCAAACAATCTCAACATCACCGG
AATGGTTCACACTGTGATCGAGAATGCCAAAGGAAGCAAGATCAATAGCA
AAGTATATGTTGTGGACGGTTTTCAACCAGAACCGCTATTCGGAGACAAC
GACGCAGAACACCTAGGATTCATCACCttcaaaaaggaagaaaagaGTCC
CCGAACACAAGACACAAGTGTAATCAAGAGAATTCCCCAACTCATCAGAG
ATAACCTTGGGATACAAGTCGAAACACGTCCTGACAGCAACGAAGCAGAC
CCAACAGAGATCGAAAAGATAATGAAACTCGTCGACGGATACCGAGGTCT
AGTCTTCGACGACAACAAAATTGGATGCATCAGAACCAAGCCCATCCACC
TCGACTATGAAGGAGAATTCGAGCCAAAACAACCACCATTTCACAACGTT
CCAATCCACTATCTAGGCGAAGTCAGCAAACTCATTGAATTTCTGAGAAC
ACAGGGAGTGATAACGGATGTGGACCCACGAGAAAGCTATGACTGCGTGA
TGAACGTGGTGATAACAGATAAAAGCAATGGTCAAATCAGGATGAACATA
GACAACACACCACGCAATGCGGGAATGAAGCGCACTCGATTCCACGTCCA
AACACcagattttcattgaaatgGACATGGGCTGGGGTTACCATCAGCTT
CAGCTAGACAAAGAATCCAAAGACAAGAGCATCTTTCAAACACACGAGGG
CCTCTACACAGCTCCACAGAATGGAGAGGCTGTATTTTGGACCCACATCC
TCAAGCGGCGTCTTCCACAACGAGATACGGAAAGCATTTGTTGGCGTCCA
AGGCGTCACTACATTGCACGACAACATCCTAGTCTACGTTGAGACTATAA
GGAACATTACATAAACCTCGCAGCATTCCTGGATCGTTGTAAAGAGAATG
GCACAATCCTCAAACCGTCCAAATTGACGTTCGGACAGACAAGAATCAAA
TGGTTTGGTCGGACGTTCCATTCCAATGGCGTGACAGCGGACCCAAAGAA
GATTCAAAACATCAAAGACGGTGGCACACCTGAAAACACAGGGGATGTTC
GCTCTTTGTTGATGGCTTGCCAGTAGAATGCGAAGTTCACATTCGACAAC
AAACTACACACAACATATGAAGACACTACCGCACCGCTTCGCAAGTTGTT
GAAAAAGGGGGAGAAATTCCGCTGGCAGGGAGAAGAAGAAACTGCATACC
AGACGCTGATGCAAATCCTGGACGATCCAGCGACTCTACAAGCGTACGAT
CCCAATGAAAAGACTCATGTGGTGTCGGACTCATCAGAGGTAGGAATCCA
AGCAAGCATCTACCAGGAGAGGGGAGAAGGTATGTGGGTTCTGATAGACC
ATAATAGCAGAGCTCTAACCGATGTTGAACAACGATACAGTCCAATTGAA
AGAGAAATTCTTGGTCTCTGTTTCGCAATGGAGCAGTTTCGCTACTACGT
TGTCGGAAGCCAATTCACTGCATGGACAGACCATGAACCTCTCATTCCAA
TCTACAACAACCGACAGAAACCAGCATCATGCAAAATCAGCAATCACAGA
GACCAGGTTCAAGATCTCCAATTCGATCTTCACTACCTGAAGGGGAAAAA
ATGCCATGTCACTATGGTAGCAGACACCCAAACCCGATATCCCACCTCAC
AGAAATGGAACAAGACGATCTAGGCTTCGATATTGGAACAACCATTCTAG
TACACAAAATCAACCTCAACAACACAACACCGG Run BLAST on NCBI protein sequence of TCONS_00005710-protein >TCONS_00005710-protein ID=TCONS_00005710-protein|Name=TCONS_00005710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MVHTVIENAKGSKINSKVYVVDGFQPEPLFGDNDAEHLGFITFKKEEKSP
RTQDTSVIKRIPQLIRDNLGIQVETRPDSNEADPTEIEKIMKLVDGYRGL
VFDDNKIGCIRTKPIHLDYEGEFEPKQPPFHNVPIHYLGEVSKLIEFLRT
QGVITDVDPRESYDCVMNVVITDKSNGQIRMNIDNTPRNAGMKRTRFHVQ
TPDFH Run BLAST on NCBI transcript from alignment at sc0000054:743518..745700 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005710 ID=TCONS_00005710|Name=TCONS_00005710|organism=Clytia hemisphaerica|type=transcript|length=2183bp|location=Sequence derived from alignment at sc0000054:743518..745700 (Clytia hemisphaerica)
CCGGTGTTGTGTTGTTGAGGTTGATTTTGTGTACTAGAATGGTTGTTCCA
ATATCGAAGCCTAGATCGTCTTGTTCCATTTCTGTGAGGTGGGATATCGG
GTTTGGGTGTCTGCTACCATAGTGACATGGCATTTTTTCCCCTTCAGGTA
GTGAAGATCGAATTGGAGATCTTGAACCTGGTCTCTGTGATTGCTGATTT
TGCATGATGCTGGTTTCTGTCGGTTGTTGTAGATTGGAATGAGAGGTTCA
TGGTCTGTCCATGCAGTGAATTGGCTTCCGACAACGTAGTAGCGAAACTG
CTCCATTGCGAAACAGAGACCAAGAATTTCTCTTTCAATTGGACTGTATC
GTTGTTCAACATCGGTTAGAGCTCTGCTATTATGGTCTATCAGAACCCAC
ATACCTTCTCCCCTCTCCTGGTAGATGCTTGCTTGGATTCCTACCTCTGA
TGAGTCCGACACCACATGAGTCTTTTCATTGGGATCGTACGCTTGTAGAG
TCGCTGGATCGTCCAGGATTTGCATCAGCGTCTGGTATGCAGTTTCTTCT
TCTCCCTGCCAGCGGAATTTCTCCCCCTTTTTCAACAACTTGCGAAGCGG
TGCGGTAGTGTCTTCATATGTTGTGTGTAGTTTGTTGTCGAATGTGAACT
TCGCATTCTACTGGCAAGCCATCAACAAAGAGCGAACATCCCCTGTGTTT
TCAGGTGTGCCACCGTCTTTGATGTTTTGAATCTTCTTTGGGTCCGCTGT
CACGCCATTGGAATGGAACGTCCGACCAAACCATTTGATTCTTGTCTGTC
CGAACGTCAATTTGGACGGTTTGAGGATTGTGCCATTCTCTTTACAACGA
TCCAGGAATGCTGCGAGGTTTATGTAATGTTCCTTATAGTCTCAACGTAG
ACTAGGATGTTGTCGTGCAATGTAGTGACGCCTTGGACGCCAACAAATGC
TTTCCGTATCTCGTTGTGGAAGACGCCGCTTGAGGATGTGGGTCCAAAAT
ACAGCCTCTCCATTCTGTGGAGCTGTGTAGAGGCCCTCGTGTGTTTGAAA
GATGCTCTTGTCTTTGGATTCTTTGTCTAGCTGAAGCTGATGGTAACCCC
AGCCCATGTCcatttcaatgaaaatctgGTGTTTGGACGTGGAATCGAGT
GCGCTTCATTCCCGCATTGCGTGGTGTGTTGTCTATGTTCATCCTGATTT
GACCATTGCTTTTATCTGTTATCACCACGTTCATCACGCAGTCATAGCTT
TCTCGTGGGTCCACATCCGTTATCACTCCCTGTGTTCTCAGAAATTCAAT
GAGTTTGCTGACTTCGCCTAGATAGTGGATTGGAACGTTGTGAAATGGTG
GTTGTTTTGGCTCGAATTCTCCTTCATAGTCGAGGTGGATGGGCTTGGTT
CTGATGCATCCAATTTTGTTGTCGTCGAAGACTAGACCTCGGTATCCGTC
GACGAGTTTCATTATCTTTTCGATCTCTGTTGGGTCTGCTTCGTTGCTGT
CAGGACGTGTTTCGACTTGTATCCCAAGGTTATCTCTGATGAGTTGGGGA
ATTCTCTTGATTACACTTGTGTCTTGTGTTCGGGGACtcttttcttcctt
tttgaaGGTGATGAATCCTAGGTGTTCTGCGTCGTTGTCTCCGAATAGCG
GTTCTGGTTGAAAACCGTCCACAACATATACTTTGCTATTGATCTTGCTT
CCTTTGGCATTCTCGATCACAGTGTGAACCATTCCGGTGATGTTGAGATT
GTTTGAAGATCCTCATGCCCTGAGTATGATGTCCGGCTCTTCCAGGGGTC
CCATGGCGTTGCTGTAGTGTTCAGGTGTGATGATGGTGTGCTGGCTACCT
GTGTCTGCAAAGAGGGTATGCTTTGTGCCGCCTATCTTGACGTCGACCCA
TTTGTCTGCTGGCTTAGTCACCTTCTTTTTATGGCAGTAAGTACAGTAGG
TTCTTGGTTCGATTCATTTCGCTTCAATGTTGTAAAGTAATCTGAGTTGA
TTCTTTTGACTGTCTTCTTTCCAGGACAAATTGGAGTCCTGGCAAAATGG
TTCTTCCCACCACATGTGAAGCATTCTTTGCCATTTACTGGGCATCTCCC
TGACTGATGGCTGGAGTTGCATCGGTTGCAGGATCCTTTGTGTCTGTTGC
TATACTTTCCTGCCTTTTTGAGCTTCAGTACtt Coding sequence (CDS) from alignment at sc0000054:743518..745700 >TCONS_00005710 ID=TCONS_00005710|Name=TCONS_00005710|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at sc0000054:743518..745700 (Clytia hemisphaerica)
tcaatgaaaatctgGTGTTTGGACGTGGAATCGAGTGCGCTTCATTCCCG
CATTGCGTGGTGTGTTGTCTATGTTCATCCTGATTTGACCATTGCTTTTA
TCTGTTATCACCACGTTCATCACGCAGTCATAGCTTTCTCGTGGGTCCAC
ATCCGTTATCACTCCCTGTGTTCTCAGAAATTCAATGAGTTTGCTGACTT
CGCCTAGATAGTGGATTGGAACGTTGTGAAATGGTGGTTGTTTTGGCTCG
AATTCTCCTTCATAGTCGAGGTGGATGGGCTTGGTTCTGATGCATCCAAT
TTTGTTGTCGTCGAAGACTAGACCTCGGTATCCGTCGACGAGTTTCATTA
TCTTTTCGATCTCTGTTGGGTCTGCTTCGTTGCTGTCAGGACGTGTTTCG
ACTTGTATCCCAAGGTTATCTCTGATGAGTTGGGGAATTCTCTTGATTAC
ACTTGTGTCTTGTGTTCGGGGACtcttttcttcctttttgaaGGTGATGA
ATCCTAGGTGTTCTGCGTCGTTGTCTCCGAATAGCGGTTCTGGTTGAAAA
CCGTCCACAACATATACTTTGCTATTGATCTTGCTTCCTTTGGCATTCTC
GATCACAGTGTGAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005710-exon-sc0000054-1491911889:743518..745700 | TCONS_00005710-exon-sc0000054-1491911889:743518..745700 | Clytia hemisphaerica | exon |
| TCONS_00005710-exon-sc0000054-1510915933:743518..745700 | TCONS_00005710-exon-sc0000054-1510915933:743518..745700 | Clytia hemisphaerica | exon |
| TCONS_00005710-exon-sc0000054-1575043694:743518..745700 | TCONS_00005710-exon-sc0000054-1575043694:743518..745700 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:743518..745700 . |
Blast
The following BLAST results are available for this feature:
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