TCONS_00005668 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005668
Unique NameTCONS_00005668
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005668 ID=TCONS_00005668|Name=TCONS_00005668|organism=Clytia hemisphaerica|type=transcript|length=329bp
GATATGGTTCGGCATTACGTggctctcccagtgtcgttcgagaGTCATGG
TATACggccatggcttggcagctcgcgtctgtcagtgccgtgattcctac
tcccATCCCGAATGCATTGTGATGGCTCATATCTATCAATCAAGAATTAT
GCAGAATGAGTTGTGTCTTATGACAAGCAAGAGAGCTTCAGTGAAGAAAG
ACCAGCTGTTAATTTGAAGATAAAAGGACCTTAGAGGATGCACAATATGT
TCATCCACGATTGTAGAAGGCTATTTTATCGACGTTGAACGCAATAAAAG
TGAATCGGAGCTCACTCAGGAAAACACAG
Run BLAST on NCBI

transcript from alignment at sc0000054:681341..682188-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005668 ID=TCONS_00005668|Name=TCONS_00005668|organism=Clytia hemisphaerica|type=transcript|length=848bp|location=Sequence derived from alignment at sc0000054:681341..682188- (Clytia hemisphaerica)
GATATGGTTCGGCATTACGTGGCTCTCCCAGTGTCGTTCGAGAGTCATGG
TATACGGCCATGGCTTGGCAGCTCGCGTCTGTCAGTGCCGTGATTCCTAC
TCCCATCCCGAATGCATTGTGATGGCTCATATCTATCAATCAAGAATTAT
GCAGAATGAGTTGTGTCTTATGACAAGCAAGAGAGCTTCAGTGAAGAAAG
ACCAGCTGTTAATTTGAAGATAAAAGGTTTGATCATATTAGTCTGTATTA
GCAACGATAAAAATTTAAATAAGCTGCATAGGTATTTAAATGATGCTGGC
TTCTTCTTTTTTTACATATTTGAGTTATTCTGAATGGAGGTTATTTTATA
CCCTAACGTGTTCTTCAAAAAATTCTTTTTATCGAATAATAAAAGTACTG
TACACTTATTTTTATGAAAACAAAATATATAACAACATAAGGCTTCGATG
GCCAAATTGTTAAGAACAAGATAAGAACATTTTAAGGCTTATTAGACCCT
AGAACACTCAATTTCTTAGAAAAATGGACAAAAATACTCAAAAAATGGTG
AAAATAAGAACATTATTAAGAACATTTTTAGGCTTGAAACTCTAAAAGTT
AAGAACATTGGAAGGCTTTAAAAAATCTGGATGTTCTTTTTAAAAGAAAA
TATGTAAAATATTACTTTAGATTCCTTCTGAGGATTGTTTGAATAAGACA
TGAAACTGTCAGTATTGATACAATAATCGTGTTATTTCTTTTAAGGACCT
TAGAGGATGCACAATATGTTCATCCACGATTGTAGAAGGCTATTTTATCG
ACGTTGAACGCAATAAAAGTGAATCGGAGCTCACTCAGGAAAACACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003204XLOC_003204Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005668-exon-sc0000054-1575043694:681963..682188TCONS_00005668-exon-sc0000054-1575043694:681963..682188Clytia hemisphaericaexon
TCONS_00005668-exon-sc0000054-1575043694:681341..681443TCONS_00005668-exon-sc0000054-1575043694:681341..681443Clytia hemisphaericaexon
TCONS_00005668-exon-sc0000054-1510915933:681963..682188TCONS_00005668-exon-sc0000054-1510915933:681963..682188Clytia hemisphaericaexon
TCONS_00005668-exon-sc0000054-1510915933:681341..681443TCONS_00005668-exon-sc0000054-1510915933:681341..681443Clytia hemisphaericaexon
TCONS_00005668-exon-sc0000054-1491911889:681963..682188TCONS_00005668-exon-sc0000054-1491911889:681963..682188Clytia hemisphaericaexon
TCONS_00005668-exon-sc0000054-1491911889:681341..681443TCONS_00005668-exon-sc0000054-1491911889:681341..681443Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:681341..682188 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.864879	0.334736	0.327487	1.19605	1.57522	1.52035	0.711668	0.498256	0.925755	0.59904	1.57514	0.393238	1.02095	0.335745	0.720612	0	0.45495	0.628538	0.32886	0.285839	0.418267	0	0.616349	0.634825	1.98298	0.405377	0	0.656269	0.334317
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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