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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005662 ID=TCONS_00005662|Name=TCONS_00005662|organism=Clytia hemisphaerica|type=transcript|length=4322bpRun BLAST on NCBI protein sequence of TCONS_00005662-protein >TCONS_00005662-protein ID=TCONS_00005662-protein|Name=TCONS_00005662-protein|organism=Clytia hemisphaerica|type=polypeptide|length=612bp MKLFLLLIFFTRGVRPCPTECTCMPKESPIAVDCKYRAITEDTLQNVPSSRun BLAST on NCBI transcript from alignment at sc0000054:576203..606971- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005662 ID=TCONS_00005662|Name=TCONS_00005662|organism=Clytia hemisphaerica|type=transcript|length=30769bp|location=Sequence derived from alignment at sc0000054:576203..606971- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000054:576203..606971- >TCONS_00005662 ID=TCONS_00005662|Name=TCONS_00005662|organism=Clytia hemisphaerica|type=CDS|length=25746bp|location=Sequence derived from alignment at sc0000054:576203..606971- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005662 vs. Swiss-Prot (Human)
Match: RTN4R (Reticulon-4 receptor OS=Homo sapiens GN=RTN4R PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 3.066e-19 Identity = 62/241 (25.73%), Postives = 112/241 (46.47%), Query Frame = 2
Query: 101 PCPTECTCMPKESPIAVDCKYRAITEDTLQNVPSSATQLYLTNSNITFVLKRSIFYRLRNLQILYIDN------DPAQTKNVT-----------KVKVFEDGVFQDLKKLQILGLSWIQLETLREQTFQGLTGLQRLFLTGNKLKTIVDGAFKDLGNVYQLLLQENELQTINSGLFIGLKKLDDLNVTKNQLSSI--SGLKEAGELKRIHLSHNKLRSIRTDFFSDLPNLDEVAISFNPFT 766
PCP C C E + C + + + +P+++ +++L + I+ V S F RNL IL++ + D A + +++ + F L +L L L L+ L F+GL LQ L+L N L+ + D F+DLGN+ L L N + ++ F GL LD L + +N+++ + ++ G L ++L N L ++ T+ + L L + ++ NP+
Sbjct: 26 PCPGACVCY-NEPKVTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 263 The following BLAST results are available for this feature:
BLAST of TCONS_00005662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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