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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005633 ID=TCONS_00005633|Name=TCONS_00005633|organism=Clytia hemisphaerica|type=transcript|length=1724bp
ctataaagccttccttgaaaactcggatcccccccccttaaaaaaggggg
gggggttcatactatgaaagtccctgaaaagtcccatttttcgagatttc
aaattggcataacttgagttaagaaaataaatacaccgaaaaatttagaa
agttttCCTAAAGTCCTAGAGGCTAgctgcaggcaaaatatctcagacca
tctgattatccctttaaggcAGGTATCAAAATatactttattttatttta
gaacaaaaaataatgGATTATACCAAAGAAGAAAGTGATTTTGAAAAAAC
GCGCAAAGAAAATATCAAGAGAAATGAAGAAgaatttcaaaagctttttc
cgGCTATGCTGCTTAAACCCTTCAAAGATTCACCACGTACCACTGAAGTT
CGTCGTGCACGACGCAATAACTTACACAGTATTGTTCAAACAATCACTCC
TAGGGAATCTTTGAGAAGGTCATGTAAAAGGGAAAGAGAACCCAGTTTGG
ATACTTTTTCTGATTCTGACGATGGAGGAGATGACGAGGTAAGCAATGGT
AGTTCTGGATCTGCTGTTGTCGTCAAGTTTGGACAGTGGAATAAGAAGTT
CAAATCGCTCAGATATCAAGATGATGTTAAGGATAAAGATTTCATCTACG
ATGGAGATTCAATTTCTGATGACGAGCACCAAGAGGAAGGGAAGAAGAGG
AAGAGTAAAACTCCTCGTGTGAAGCCTCAATCACGTGTTAAAGCAGCACG
TGTTTTGCGTCCTTTCGATGCAGTAACTGAGGAGGATTTGATTCTAGTGG
CTGATCGAACGAGCGATAAACGTTATGATCAAGTGGATGGTACGAGTTGT
CATCAATGCCGTCAAAAGACGGACGACTTAAAAACAGTATGTCGTAGTGG
GCACTGTGTCGGTATACGAGGCCAGTTCTGTGGGCCATGTTTAAAGAATC
GTTATGGTGAGTGTGCAAAAGAAGCCATCATGAATGCCACGTGGCAATGT
CCGCCATGTCGTGGTATTTGTAATTGCAGCTTTTGTATGAAGAAACGAGG
ACGTCGTGCTACAGGTATTATGATCCATGCTGCAAAACAAAGTGGGTATA
CTGATGTCTCCTCTTTTCTTGGATTGAAAGAGAAAGTCGTCGAATGACGT
TGATACTTTATTAACGTTTTCTTCAATCATGTTGGTTGTTTATATGAGAT
AGACTGAATTTTTCATCCCTTGAACAATAACTGCTTTGCAATCCTACCTT
TGATCTATCTTAGATTTCTTTATTAATTCAGTAGCAAAGAATTTCAACGT
TATTACTTTCAAATGATATTTTCAGTATAATTTTCCAAACAATTGGAAAA
GTTTTTAAGTATTTCATTTACATTTTATTTGTATATAACAAAAATCCgtg
tattttttcattaaagcCCAACTTGCCATGTAAACCCTTAATAGATATCC
TCCCAGCGTAGAGGACTATCCGTACCCTTTGCATTTTTTGTCTGTTCCCT
AAGTTCTCCTTTTATCCATTTGCATTATACCCCCTTGCTGTGTTTCCCCC
TTTCAATATCAACCTTTTCCGAACCTCTGTTCCACGTACTTTCGTACCTT
TTAAAGTATTTCTCATTGgtcaatttcaaagaaaaatcttgAGGCATATT
ATATTCAATGGTATGTTATTCTCTTTCTaggaaaagatatttttaaaaat
ttttaatttagtaTTACGTTCCcg Run BLAST on NCBI transcript from alignment at sc0000054:318372..320095- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005633 ID=TCONS_00005633|Name=TCONS_00005633|organism=Clytia hemisphaerica|type=transcript|length=1724bp|location=Sequence derived from alignment at sc0000054:318372..320095- (Clytia hemisphaerica)
CTATAAAGCCTTCCTTGAAAACTCGGATCCCCCCCCCTTAAAAAAGGGGG
GGGGGTTCATACTATGAAAGTCCCTGAAAAGTCCCATTTTTCGAGATTTC
AAATTGGCATAACTTGAGTTAAGAAAATAAATACACCGAAAAATTTAGAA
AGTTTTCCTAAAGTCCTAGAGGCTAGCTGCAGGCAAAATATCTCAGACCA
TCTGATTATCCCTTTAAGGCAGGTATCAAAATATACTTTATTTTATTTTA
GAACAAAAAATAATGGATTATACCAAAGAAGAAAGTGATTTTGAAAAAAC
GCGCAAAGAAAATATCAAGAGAAATGAAGAAGAATTTCAAAAGCTTTTTC
CGGCTATGCTGCTTAAACCCTTCAAAGATTCACCACGTACCACTGAAGTT
CGTCGTGCACGACGCAATAACTTACACAGTATTGTTCAAACAATCACTCC
TAGGGAATCTTTGAGAAGGTCATGTAAAAGGGAAAGAGAACCCAGTTTGG
ATACTTTTTCTGATTCTGACGATGGAGGAGATGACGAGGTAAGCAATGGT
AGTTCTGGATCTGCTGTTGTCGTCAAGTTTGGACAGTGGAATAAGAAGTT
CAAATCGCTCAGATATCAAGATGATGTTAAGGATAAAGATTTCATCTACG
ATGGAGATTCAATTTCTGATGACGAGCACCAAGAGGAAGGGAAGAAGAGG
AAGAGTAAAACTCCTCGTGTGAAGCCTCAATCACGTGTTAAAGCAGCACG
TGTTTTGCGTCCTTTCGATGCAGTAACTGAGGAGGATTTGATTCTAGTGG
CTGATCGAACGAGCGATAAACGTTATGATCAAGTGGATGGTACGAGTTGT
CATCAATGCCGTCAAAAGACGGACGACTTAAAAACAGTATGTCGTAGTGG
GCACTGTGTCGGTATACGAGGCCAGTTCTGTGGGCCATGTTTAAAGAATC
GTTATGGTGAGTGTGCAAAAGAAGCCATCATGAATGCCACGTGGCAATGT
CCGCCATGTCGTGGTATTTGTAATTGCAGCTTTTGTATGAAGAAACGAGG
ACGTCGTGCTACAGGTATTATGATCCATGCTGCAAAACAAAGTGGGTATA
CTGATGTCTCCTCTTTTCTTGGATTGAAAGAGAAAGTCGTCGAATGACGT
TGATACTTTATTAACGTTTTCTTCAATCATGTTGGTTGTTTATATGAGAT
AGACTGAATTTTTCATCCCTTGAACAATAACTGCTTTGCAATCCTACCTT
TGATCTATCTTAGATTTCTTTATTAATTCAGTAGCAAAGAATTTCAACGT
TATTACTTTCAAATGATATTTTCAGTATAATTTTCCAAACAATTGGAAAA
GTTTTTAAGTATTTCATTTACATTTTATTTGTATATAACAAAAATCCGTG
TATTTTTTCATTAAAGCCCAACTTGCCATGTAAACCCTTAATAGATATCC
TCCCAGCGTAGAGGACTATCCGTACCCTTTGCATTTTTTGTCTGTTCCCT
AAGTTCTCCTTTTATCCATTTGCATTATACCCCCTTGCTGTGTTTCCCCC
TTTCAATATCAACCTTTTCCGAACCTCTGTTCCACGTACTTTCGTACCTT
TTAAAGTATTTCTCATTGGTCAATTTCAAAGAAAAATCTTGAGGCATATT
ATATTCAATGGTATGTTATTCTCTTTCTAGGAAAAGATATTTTTAAAAAT
TTTTAATTTAGTATTACGTTCCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005633-exon-sc0000054-1575043694:318372..320095 | TCONS_00005633-exon-sc0000054-1575043694:318372..320095 | Clytia hemisphaerica | exon |
| TCONS_00005633-exon-sc0000054-1510915933:318372..320095 | TCONS_00005633-exon-sc0000054-1510915933:318372..320095 | Clytia hemisphaerica | exon |
| TCONS_00005633-exon-sc0000054-1491911889:318372..320095 | TCONS_00005633-exon-sc0000054-1491911889:318372..320095 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:318372..320095 - |
Blast
BLAST of TCONS_00005633 vs. Swiss-Prot (Human)
Match: CDA7L (Cell division cycle-associated 7-like protein OS=Homo sapiens GN=CDCA7L PE=1 SV=2) HSP 1 Score: 169.859 bits (429), Expect = 5.239e-46 Identity = 77/131 (58.78%), Postives = 97/131 (74.05%), Query Frame = 2
Query: 755 LRPFDAVTEEDLILVADRTSDKRYDQVDGTSCHQCRQKTDDLKTVCRSGHCVGIRGQFCGPCLKNRYGECAKEAIMNATWQCPPCRGICNCSFCMKKRGRRATGIMIHAAKQSGYTDVSSFL-GLKEKVVE 1144
RP + +TEEDL VA DK YD+V G +CHQCRQKT D KTVCR+ C G+RGQFCGPCL+NRYGE + A+++ W CPPCRGICNCS+C K+ GR ATGI+IH AK GY +V +L L++++VE
Sbjct: 322 FRPVEDITEEDLENVAITVRDKIYDKVLGNTCHQCRQKTIDTKTVCRNQGCCGVRGQFCGPCLRNRYGEDVRSALLDPDWVCPPCRGICNCSYCRKRDGRCATGILIHLAKFYGYDNVKEYLESLQKELVE 452
The following BLAST results are available for this feature:
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