TCONS_00005628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005628
Unique NameTCONS_00005628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length868

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005628 ID=TCONS_00005628|Name=TCONS_00005628|organism=Clytia hemisphaerica|type=transcript|length=868bp
cattttttcaaaaattgagttatgaccataccgatgctttacaccccatt
ttttatcgaatttttggcttaaatccatcaaaaaccaacctaaagtgNTC
GTATGATGTTTCACGTCTCAACTCTCTTGCCCATGGAAGAGCATGATGAC
CAGAAGCTCCAAAGGAAAAGACATATTGGGAATGATATTGTTTGTATAAT
TTTCCTTGCACCTGGCGCTCGTTTCGACCCAAACTCGATCAAATCAAATT
TCCTTCATGTTTTCATCATAATTCAACCGCAGATTTTACATGGAGAACTA
TTTTACAAGGTCGATGTTGCTTCGAGAGATTTTGTCCAAAATTATGGACC
GCCACTTCCCAAGAATAAACTGTTCAAAAATGTAcgtttggctttaaatt
tcacAGCCTCTCCCGCTGTTCACGTTCTTTGTTCCTAAAATTTGTTGTAA
GATTATTTGACAAGTTCACCTCCCTCttgtaaaaatcttttcaaaggtTC
CTTTAATATTGTATTGATGTAGGTAATATTTTGAGCAAAGTCTCTTCCTT
TTCTTGGAGGCTCATCAAGAAGGAAATACTGCTTCCAGCGTTAGCCTTAG
ATCCTGAGGATCATTTTTTTTAGGATTCATCTTTCCAACGATGGCTGTAT
GCGAAGATAATCAATGGTGAAAGAGCGAGTTACCGTTCACCCAAGTTCGC
TTCCATGCAGGAACGTACTCGTCGGCAACTTTTAGAAGAGTTAGTGCATG
ATCAAGCTTGTAAGGAAGTTCAGCCGTCCCTCAAattttcgaagaatcct
tttCAACGGCTTCTTCCCCTTAGACACAGTTTCACTCGATCGTCGCCACA
TACTCCGTCCTTGCAAAG
Run BLAST on NCBI

transcript from alignment at sc0000054:236849..240197-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005628 ID=TCONS_00005628|Name=TCONS_00005628|organism=Clytia hemisphaerica|type=transcript|length=3349bp|location=Sequence derived from alignment at sc0000054:236849..240197- (Clytia hemisphaerica)
CATTTTTTCAAAAATTGAGTTATGACCATACCGATGCTTTACACCCCATT
TTTTATCGAATTTTTGGCTTAAATCCATCAAAAACCAACCTAAAGTGNTC
GTATGATGTTTCACGTCTCAACTCTCTTGCCCATGGAAGAGCATGATGAC
CAGAAGGTAATATATTAAGATTGAATTCGATTAAAAACCCAGCTTCTGTG
GATTGAGTCGTCAATAAGACAGTTTTTTGGTTCTATGTCTTCACTTCAGA
ATTGCCTACAAAATTTCTTAAATTTTTGAACTAAAGAGATTTTAATGAAC
TTTAGAGATTTTAATGAACTTTTTAATGAATGAATTTCTGAATGTTGTTA
ACAAAGGTGTATGGGTAGAGATTTCAATTAATTTTCTTTTAGACATTCAT
AGCTCTTTGCTAATCAAAAGTACTAATCAATAAGACAGTATTACCAAAGT
ATGAAATTCCAACCAAAGCCTTGTTATGTTGTGTTTAGTCACGTCGAAAA
AAAGTTTGGCAGACATGTGAAGTATATTTCATTTCCTTCCAAAGGAAAAT
GATTGATATTATTTGAACAGGATACCTAGCGAAGGAAATTGTTTAGAAAT
TTTAATATGATATTGCCATTTCATTTACTATACATTACGAGCAATAAAAG
GTAGTCTGACTTTCTCTTTGACTAATTTTGCAGTCTCAAAGTTTTTAAAA
ATAGTTAAGATTTACTCGTTGTCATGGTTCCATACTTGAGACAACCAGTT
CTTTTTCTGTCTTACTTCCTGTGTTTTGAGGCATTTCTCCTTATTGTATA
TTGGTGTTTTGAATTTCCACAACAGCAGAATTCTTAAAATCCTTGATGTT
GGTGACATCACTAATACCCATTCACCAGACTTCCTTTTTAAAAACTAGCC
ATTTCATCTCGAGTAGGAAGAATTCTCAAGGGTTTTTCTTTGTTTTCGAC
AGTCATTTTCTTTTTGACACGTAAAATAGCTGCTATGTCAACTCCAGTTA
TATAGCTTAAAAGTTTTTAGTACTTTTGAGAGCACGCTGAAGAAAAATAT
CAATATCAAATATCCCTTGTCAATTTAACAACAGCTTCAGTTTCTGAGTT
TGTTGAGTATCTTATGGTTAAGAAGAAGGAAGTAGACGAAAGAGGAATCA
GATATGTGAGGTTTCCATGATTCATTTATATCACTGAGAAAAATTTGTCT
GCTCTTGTACGTGGTTTATAGTTCAACCATACAATGATTAAGTTTGTTGA
TTGCTTTGTGTGCTCAGATAATTAACATACATGTACTGTGCCACATGCCA
AGACATGCTGTTTGATGATTGCAAAAAATGCCATCAAGAGAAGAAAAAAA
TCATCATTTTTCATCATAATTGCAGTGATTGAGTGCTCATGACTTTTTTA
AGAGTTAATTGATTGGTTAGCTTGTTTCGAAAAAGAATAACCTGTTTATC
TATACATTTTAATCATTGTCTTTTGACAAATTGCCTTTTGTGCGTTGATC
TATTTATTTTTGTAAAAGTAATTATGCAAACACTGCAATAATGTTTCTAA
AATCATTTATCTGTGGTGATTAGCTCTTTTAAACGACCACATTAGTGAGT
TTTGAACCTAGGAAATATCAAGTGGCGTGCAGTGATTTTCCTGTATACAA
ACTCCTAACCATTTCAATCTGTCAAAGATCACTTTCTATGATTCTCTTCA
GTAATTCGAACATTCAAATTATATTTCTAGTTCGACTTTAACAAAAAACA
TAGTATTCTAAAGACCAATGAAAATAATCCTTTCAATAGTCTAATTGAGA
TCCATTTATTGATTTTACAGTTTCTTATCTACATACTAGCCCTGTTTCTA
AATTGTTGAAAGTTCGTATTTTCCAAGAAAACCTTAACAAAAGCCATTTC
GTTTTTTCTGTTCACCAGCTCCAAAGGAAAAGACATATTGGGAATGATAT
TGTTTGTATAATTTTCCTTGCACCTGGCGCTCGTTTCGACCCAAACTCGA
TCAAATCAAATTTCCTTCATGTTTTCATCATAATTCAACCGCAGATTTTA
CATGGAGAACTATTTTACAAGGTATCAATGTTATTTTCTTTTCACTCTTT
ATTAAAGACATTAGATGGTAAGGTGGACCGATTGCTTGTCGTTTATTCAC
CTCATCACTCTGTAGTAGAAGGAGCTATTCGAAATGTACTTTTACTTATA
TATAAATTCGAATGTACACTGTACAATTGAATTCTTGAAACATGAAACAA
TTCACTGATATTTCTTTCACTCTCAGGTCGATGTTGCTTCGAGAGATTTT
GTCCAAAATTATGGACCGCCACTTCCCAAGAATAAACTGTTCAAAAATGT
ACGTTTGGCTTTAAATTTCACAGCCTCTCCCGCTGTTCACGTTCTTTGTT
CCTAAAATTTGTTGTAAGATTATTTGACAAGTTCACCTCCCTCTTGTAAA
AATCTTTTCAAAGGTTCCTTTAATATTGTATTGATGTAGGTAATATTTTG
AGCAAAGTCTCTTCCTTTTCTTGGAGGCTCATCAAGAAGGAAATACTGCT
TCCAGCGTTAGCCTTAGATCCTGAGGATCATTTTTTTTAGGATTCATCTT
TCCAACGATGGCTGTATGCGAAGATAATCAATGGTGAAAGAGCGAGTTAC
CGTTCACCCAAGTTCGCTTCCATGCAGGTAAAGAAGTCTTTATTTCTGCT
TCACCCTGTCTTGGTGATATGGAAGGTGTTAGAACTGATCAATGAGTCCA
ATTAATGTTCATTGAGTTGGACACTTGTAGGTAAACGTTTGACTGGTTCA
ATAGTTGTATCAAGACGAAAAAAACGGGTTGAAAAGAATCAAATGGGATT
GTATTCGCTGGTTATGACAATCGCATATTATATTATTCTTGTTTTTGTTC
AGGAACGTACTCGTCGGCAACTTTTAGAAGAGTTAGTGCATGATCAAGCT
TGTAAGGAAGTTCAGCCGTCCCTCAAATTTTCGAAGAATCCTTTTCAACG
GCTTCTTCCCCTTAGGTAAGCTTACGTATTTCGTCATGTCAATATATTAT
AATCAGTTAAAATAAGTGGAAACGAGTGGAATTTATAGTATTAACCTGCA
TGTTAGAACCAAATAGATTCATTACAACAAAGAACTCCTTTTAGGAATAA
GTTCACCAAGCTTCTTTCAATAGAAGAGAATGTAAAAATCTTGTTTTACT
TACTGTTTTGTAAACTTAACAGAAATTTGTGTGTTTTAACCATCATCAAA
GATGGTTTTTAAAAGTATTTGATAATTGATTTTGAATTTTTCTACATTAC
ACAGACACAGTTTCACTCGATCGTCGCCACATACTCCGTCCTTGCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003188XLOC_003188Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005628-exon-sc0000054-1575043694:240042..240197TCONS_00005628-exon-sc0000054-1575043694:240042..240197Clytia hemisphaericaexon
TCONS_00005628-exon-sc0000054-1575043694:238127..238279TCONS_00005628-exon-sc0000054-1575043694:238127..238279Clytia hemisphaericaexon
TCONS_00005628-exon-sc0000054-1575043694:237521..237921TCONS_00005628-exon-sc0000054-1575043694:237521..237921Clytia hemisphaericaexon
TCONS_00005628-exon-sc0000054-1575043694:237183..237295TCONS_00005628-exon-sc0000054-1575043694:237183..237295Clytia hemisphaericaexon
TCONS_00005628-exon-sc0000054-1575043694:236849..236893TCONS_00005628-exon-sc0000054-1575043694:236849..236893Clytia hemisphaericaexon
TCONS_00005628-exon-sc0000054-1510915933:240042..240197TCONS_00005628-exon-sc0000054-1510915933:240042..240197Clytia hemisphaericaexon
TCONS_00005628-exon-sc0000054-1510915933:238127..238279TCONS_00005628-exon-sc0000054-1510915933:238127..238279Clytia hemisphaericaexon
TCONS_00005628-exon-sc0000054-1510915933:237521..237921TCONS_00005628-exon-sc0000054-1510915933:237521..237921Clytia hemisphaericaexon
TCONS_00005628-exon-sc0000054-1510915933:237183..237295TCONS_00005628-exon-sc0000054-1510915933:237183..237295Clytia hemisphaericaexon
TCONS_00005628-exon-sc0000054-1510915933:236849..236893TCONS_00005628-exon-sc0000054-1510915933:236849..236893Clytia hemisphaericaexon
TCONS_00005628-exon-sc0000054-1491911889:240042..240197TCONS_00005628-exon-sc0000054-1491911889:240042..240197Clytia hemisphaericaexon
TCONS_00005628-exon-sc0000054-1491911889:238127..238279TCONS_00005628-exon-sc0000054-1491911889:238127..238279Clytia hemisphaericaexon
TCONS_00005628-exon-sc0000054-1491911889:237521..237921TCONS_00005628-exon-sc0000054-1491911889:237521..237921Clytia hemisphaericaexon
TCONS_00005628-exon-sc0000054-1491911889:237183..237295TCONS_00005628-exon-sc0000054-1491911889:237183..237295Clytia hemisphaericaexon
TCONS_00005628-exon-sc0000054-1491911889:236849..236893TCONS_00005628-exon-sc0000054-1491911889:236849..236893Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:236849..240197 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.381754	1.08003	0.479008	0	0.390345	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00005628 vs. Swiss-Prot (Human)
Match: RPGP2 (Rap1 GTPase-activating protein 2 OS=Homo sapiens GN=RAP1GAP2 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 3.498e-21
Identity = 48/94 (51.06%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:  100 RMMFHVSTLLPMEEHDDQKLQRKRHIGNDIVCIIFLAPGARFDPNSIKSNFLHVFIIIQPQILHGEL-FYKVDVASRDFVQNYGPPLPKNKLFK 378
             +MFHVST LP  + D Q+LQRKRHIGNDIV IIF      F P+ I SNFLH +I++Q +    E   YKV V +R+ V  +GPPLP   +F+
Sbjct:  330 EIMFHVSTKLPFTDGDAQQLQRKRHIGNDIVAIIFQEENTPFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQ 423
The following BLAST results are available for this feature:
BLAST of TCONS_00005628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPGP23.498e-2151.06Rap1 GTPase-activating protein 2 OS=Homo sapiens G... [more]
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