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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005626 ID=TCONS_00005626|Name=TCONS_00005626|organism=Clytia hemisphaerica|type=transcript|length=2612bpRun BLAST on NCBI protein sequence of TCONS_00005626-protein >TCONS_00005626-protein ID=TCONS_00005626-protein|Name=TCONS_00005626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp MMFHVSTLLPMEEHDDQKLQRKRHIGNDIVCIIFLAPGARFDPNSIKSNFRun BLAST on NCBI transcript from alignment at sc0000054:226329..240199- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005626 ID=TCONS_00005626|Name=TCONS_00005626|organism=Clytia hemisphaerica|type=transcript|length=13871bp|location=Sequence derived from alignment at sc0000054:226329..240199- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000054:226329..240199- >TCONS_00005626 ID=TCONS_00005626|Name=TCONS_00005626|organism=Clytia hemisphaerica|type=CDS|length=22365bp|location=Sequence derived from alignment at sc0000054:226329..240199- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005626 vs. Swiss-Prot (Human)
Match: RPGP1 (Rap1 GTPase-activating protein 1 OS=Homo sapiens GN=RAP1GAP PE=1 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 4.534e-32 Identity = 68/144 (47.22%), Postives = 91/144 (63.19%), Query Frame = 3
Query: 105 MMFHVSTLLPMEEHDDQKLQRKRHIGNDIVCIIFLAPGARFDPNSIKSNFLHVFIIIQPQILHGE-LFYKVDVASRDFVQNYGPPLPKNKLFKNDSSFQRWLYAKIINGERASYRSPKFASMQERTRRQLLEEL-----VHDQA 518
+MFHVST LP E D Q+LQRKRHIGNDIV ++F F P+ I SNFLH ++++Q + + YKV V +RD V +GPPLP +F+ FQ +L K+IN E A Y++ KFA ++ERTR LLE L +H Q+
Sbjct: 264 IMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERTRAALLETLYEELHIHSQS 407 The following BLAST results are available for this feature:
BLAST of TCONS_00005626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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