|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005592 ID=TCONS_00005592|Name=TCONS_00005592|organism=Clytia hemisphaerica|type=transcript|length=1750bp
GTGAAATGTAAGATTCAATAGGAAGttggtattttcatttttccattttt
atgaaaaatgactgaggagaaaaactttgaaagaaagACTGCAGAAGCAG
AAATAGTGAATACTACTGACAATCCAAGTTCTAGCGATGTCAATAAAACA
TATCCAGTAGATGATCTACAGTCTCCAAAATCTTCAACACCGAAAGAAGA
AGAGGAGAGCCAAAGCAATGAACAGGAAGAAGATAGTGCCAAACCGTCAG
AAACGAAAACAAATGAAGTTCGAATACAAGGTGGATCATCAACAGTAAAT
CGTACGATCGAACGTCAAAATATGGGATTTACTTTCTTCTCCAAAAGATT
TAGCCTGCACTCTCTAGGTTCTTCCTTTGAAAAGAAATCGTTATCAAGTA
TACCAGAGTGCGAAGAATACAGCACCAAAGAGAAGAATAGTGTTCAGGAT
AAATACAACACTCAACAACTCGTAACACCGAAGAAGAAGATGGCATTGAA
ACCGATCatgaaaaaaccaaaacaaaacggCAAAGAACACACAATCATAC
CTCTTCTAAACAAATCCGATAATCAGACAAAGAAATCAGGACAACAAAAC
GGAACAAATATAATCCAAAACGGAACGAATAACGGACATCGGGGAAATAT
CAGGAATCAGGCCAATGGGCAACCAACAACTTATCAAATCGTTTGTCAAA
CAATGAATGAGTACGGCGTCGGGAAGAGCATCTTGATTATATCTTTGGTG
ATTTTATTATGTGTTGGCGGATATTTATTCGGCTTGTTGATGAAAACTAA
AAGCTAAACTTCTAAGCATGCAAACTTTGTCAATAGAAGATGCGTCGTTC
TCTGTGTagccatagtccgtataaaaaaaccctggtctggaagcttattc
ctttaactttttgttcgctttttcctttgttaatatcaaaagataaaaat
caatttgctcagtttttgatcacgttaccaaatattcctcttgggattgg
tttaagatttaatcacatgatcaaaaagtgagcaaaacaaactaatttct
caaacgCAAGTTCAattaagaaacaatggaaagaaacaaaaggcttccag
aacagggtttttatacggactatggtaaAGAAGATCAGGCCAACTAAGCC
TTTATCCCCGAGAGGCTAAAGATGAAACTATCGGTGAAGTGTGTTCTTCA
CAAAAACACTAAATTGAAAAGTAtgaaatgtcggagttttatttagtcgg
ggaaaaatttcgtcacctagaggcaatTATGTCACTTTCcgccgaccaaa
atttcaaattcgtcacttttccccgacgaaatttataatttagtcacttt
caccgaactaaattgtccaaatgaaatggtttccttcacttgctcgaaaa
aagatctaagatttaattttggttggggtttaaaaaattgggtaaaagtt
ttggtccggggataaaaaaatcgggtaaaagttttggtcgggtgacaaaa
tatcggggaaaaaattcgtcggcggaaaatttcgtcaccccctcaaaatt
ttcgtcactttcccccgacatttttttcccgatAACGTAATGTAATATAT
ATCGCCTTCTGGCTTTAGACTCAATTGTAAGGTTCAATTACACCCTTGTC
TCAGTGACCTGGTGGCGTTAAACCCGGGCGCTGCAGGCGAAAATTCTTAA
GTTATATAATTTTGGTGGTATGGATTATGTGTCCACtgcttatattttat Run BLAST on NCBI protein sequence of TCONS_00005592-protein >TCONS_00005592-protein ID=TCONS_00005592-protein|Name=TCONS_00005592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MTEEKNFERKTAEAEIVNTTDNPSSSDVNKTYPVDDLQSPKSSTPKEEEE
SQSNEQEEDSAKPSETKTNEVRIQGGSSTVNRTIERQNMGFTFFSKRFSL
HSLGSSFEKKSLSSIPECEEYSTKEKNSVQDKYNTQQLVTPKKKMALKPI
MKKPKQNGKEHTIIPLLNKSDNQTKKSGQQNGTNIIQNGTNNGHRGNIRN
QANGQPTTYQIVCQTMNEYGVGKSILIISLVILLCVGGYLFGLLMKTKS Run BLAST on NCBI transcript from alignment at sc0000054:568067..570336+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005592 ID=TCONS_00005592|Name=TCONS_00005592|organism=Clytia hemisphaerica|type=transcript|length=2270bp|location=Sequence derived from alignment at sc0000054:568067..570336+ (Clytia hemisphaerica)
GTGAAATGTAAGATTCAATAGGAAGttggtattttcatttttccattttt
atgaaaaatgactgaggagaaaaactttgaaagaaagACTGCAGAAGCAG
AAATAGTGAATACTACTGACAATCCAAGTTCTAGCGATGTCAATAAAACA
TATCCAGTAGATGATCTACAGTCTCCAAAATCTTCAACACCGAAAGAAGA
AGAGGAGAGCCAAAGCAATGAACAGGAAGAAGATAGTGCCAAACCGTCAG
AAACGAAAACAAATGAAGTTCGAATACAAGGTGGATCATCAACAGTAAAT
CGTACGATCGAACGTCAAAATATGGGATTTACTTTCTTCTCCAAAAGATT
TAGCCTGCACTCTCTAGGTTCTTCCTTTGAAAAGAAATCGTTATCAAGTA
TACCAGAGTGCGAAGAATACAGCACCAAAGAGAAGAATAGTGTTCAGGAT
AAATACAACACTCAACAACTCGTAACACCGAAGAAGAAGATGGCATTGAA
ACCGATCatgaaaaaaccaaaacaaaacggCAAAGGTATGCATTTTATCA
CAGACCTGGTGGGACCCCCACCTTACCGGAAAACTTGGCCAAAagttcgt
ccccggtgggaaaaatacctcaattgcagccccactgggaaattgacttt
gtttaCCACTAGGAACAATTCAGTTTATATcctcattgggatttcgatag
aaattttcatcccaacGTGGgaaagaagttccaccggggctgtgagacat
gGGTGTCTAACAACTGCATTGTGTCCTGGAAAAAGTGgaatattattttt
cattttttctggaCAAACTGTTATAAGAATGTGACAGCGTGTACCGTACT
AATGGctatctttccaaaaatttgcTCAACATTCAAATCGTTTTTCTAAG
TACTTGTTGTTTAATTTGGCCCAATTACATCACAATCTcgtaatttgagc
aattttcaaaTTCCTTGACCTTTCTCCCTTTAAAGAGTGCTCCCAATTGA
ATTTTTTGAGTCTATGTAATATAgattttataatatattttgaatcTATT
TCTAGAACACACAATCATACCTCTTCTAAACAAATCCGATAATCAGACAA
AGAAATCAGGACAACAAAACGGAACAAATATAATCCAAAACGGAACGAAT
AACGGACATCGGGGAAATATCAGGAATCAGGCCAATGGGCAACCAACAAC
TTATCAAATCGTTTGTCAAACAATGAATGAGTACGGCGTCGGGAAGAGCA
TCTTGATTATATCTTTGGTGATTTTATTATGTGTTGGCGGATATTTATTC
GGCTTGTTGATGAAAACTAAAAGCTAAACTTCTAAGCATGCAAACTTTGT
CAATAGAAGATGCGTCGTTCTCTGTGTagccatagtccgtataaaaaaac
cctggtctggaagcttattcctttaactttttgttcgctttttcctttgt
taatatcaaaagataaaaatcaatttgctcagtttttgatcacgttacca
aatattcctcttgggattggtttaagatttaatcacatgatcaaaaagtg
agcaaaacaaactaatttctcaaacgCAAGTTCAattaagaaacaatgga
aagaaacaaaaggcttccagaacagggtttttatacggactatggtaaAG
AAGATCAGGCCAACTAAGCCTTTATCCCCGAGAGGCTAAAGATGAAACTA
TCGGTGAAGTGTGTTCTTCACAAAAACACTAAATTGAAAAGTAtgaaatg
tcggagttttatttagtcggggaaaaatttcgtcacctagaggcaatTAT
GTCACTTTCcgccgaccaaaatttcaaattcgtcacttttccccgacgaa
atttataatttagtcactttcaccgaactaaattgtccaaatgaaatggt
ttccttcacttgctcgaaaaaagatctaagatttaattttggttggggtt
taaaaaattgggtaaaagttttggtccggggataaaaaaatcgggtaaaa
gttttggtcgggtgacaaaatatcggggaaaaaattcgtcggcggaaaat
ttcgtcaccccctcaaaattttcgtcactttcccccgacatttttttccc
gatAACGTAATGTAATATATATCGCCTTCTGGCTTTAGACTCAATTGTAA
GGTTCAATTACACCCTTGTCTCAGTGACCTGGTGGCGTTAAACCCGGGCG
CTGCAGGCGAAAATTCTTAAGTTATATAATTTTGGTGGTATGGATTATGT
GTCCACtgcttatattttat Coding sequence (CDS) from alignment at sc0000054:568067..570336+ >TCONS_00005592 ID=TCONS_00005592|Name=TCONS_00005592|organism=Clytia hemisphaerica|type=CDS|length=1500bp|location=Sequence derived from alignment at sc0000054:568067..570336+ (Clytia hemisphaerica)
atgactgaggagaaaaactttgaaagaaagACTGCAGAAGCAGAAATAGT
GAATACTACTGACAATCCAAGTTCTAGCGATGTCAATAAAACATATCCAG
TAGATGATCTACAGTCTCCAAAATCTTCAACACCGAAAGAAGAAGAGGAG
AGCCAAAGCAATGAACAGGAAGAAGATAGTGCCAAACCGTCAGAAACGAA
AACAAATGAAGTTCGAATACAAGGTGGATCATCAACAGTAAATCGTACGA
TCGAACGTCAAAATATGGGATTTACTTTCTTCTCCAAAAGATTTAGCCTG
CACTCTCTAGGTTCTTCCTTTGAAAAGAAATCGTTATCAAGTATACCAGA
GTGCGAAGAATACAGCACCAAAGAGAAGAATAGTGTTCAGGATAAATACA
ACACTCAACAACTCGTAACACCGAAGAAGAAGATGGCATTGAAACCGATC
atgaaaaaaccaaaacaaaacggCAAAGAACACACAATCATACCTCTTCT
AAACAAATCCGATAATCAGACAAAGAAATCAGGACAACAAAACGGAACAA
ATATAATCCAAAACGGAACGAATAACGGACATCGGGGAAATATCAGGAAT
CAGGCCAATGGGCAACCAACAACTTATCAAATCGTTTGTCAAACAATGAA
TGAGTACGGCGTCGGGAAGAGCATCTTGATTATATCTTTGGTGATTTTAT
TATGTGTTGGCGGATATTTATTCGGCTTGTTGATGAAAACTAAAAGCTAA
atgactgaggagaaaaactttgaaagaaagACTGCAGAAGCAGAAATAGT
GAATACTACTGACAATCCAAGTTCTAGCGATGTCAATAAAACATATCCAG
TAGATGATCTACAGTCTCCAAAATCTTCAACACCGAAAGAAGAAGAGGAG
AGCCAAAGCAATGAACAGGAAGAAGATAGTGCCAAACCGTCAGAAACGAA
AACAAATGAAGTTCGAATACAAGGTGGATCATCAACAGTAAATCGTACGA
TCGAACGTCAAAATATGGGATTTACTTTCTTCTCCAAAAGATTTAGCCTG
CACTCTCTAGGTTCTTCCTTTGAAAAGAAATCGTTATCAAGTATACCAGA
GTGCGAAGAATACAGCACCAAAGAGAAGAATAGTGTTCAGGATAAATACA
ACACTCAACAACTCGTAACACCGAAGAAGAAGATGGCATTGAAACCGATC
atgaaaaaaccaaaacaaaacggCAAAGAACACACAATCATACCTCTTCT
AAACAAATCCGATAATCAGACAAAGAAATCAGGACAACAAAACGGAACAA
ATATAATCCAAAACGGAACGAATAACGGACATCGGGGAAATATCAGGAAT
CAGGCCAATGGGCAACCAACAACTTATCAAATCGTTTGTCAAACAATGAA
TGAGTACGGCGTCGGGAAGAGCATCTTGATTATATCTTTGGTGATTTTAT
TATGTGTTGGCGGATATTTATTCGGCTTGTTGATGAAAACTAAAAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005592-exon-sc0000054-1491911889:568067..568601 | TCONS_00005592-exon-sc0000054-1491911889:568067..568601 | Clytia hemisphaerica | exon |
| TCONS_00005592-exon-sc0000054-1510915933:568067..568601 | TCONS_00005592-exon-sc0000054-1510915933:568067..568601 | Clytia hemisphaerica | exon |
| TCONS_00005592-exon-sc0000054-1575043694:568067..568601 | TCONS_00005592-exon-sc0000054-1575043694:568067..568601 | Clytia hemisphaerica | exon |
| TCONS_00005592-exon-sc0000054-1491911889:569122..570336 | TCONS_00005592-exon-sc0000054-1491911889:569122..570336 | Clytia hemisphaerica | exon |
| TCONS_00005592-exon-sc0000054-1510915933:569122..570336 | TCONS_00005592-exon-sc0000054-1510915933:569122..570336 | Clytia hemisphaerica | exon |
| TCONS_00005592-exon-sc0000054-1575043694:569122..570336 | TCONS_00005592-exon-sc0000054-1575043694:569122..570336 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:568067..570336 + |
Blast
The following BLAST results are available for this feature:
|
