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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005591 ID=TCONS_00005591|Name=TCONS_00005591|organism=Clytia hemisphaerica|type=transcript|length=1760bpRun BLAST on NCBI protein sequence of TCONS_00005591-protein >TCONS_00005591-protein ID=TCONS_00005591-protein|Name=TCONS_00005591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp MDGVINNFPPPFTEYACPRRGQANFHQKTRAACKDGTAGNVGLKVVKSIVRun BLAST on NCBI transcript from alignment at sc0000054:498987..532608+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005591 ID=TCONS_00005591|Name=TCONS_00005591|organism=Clytia hemisphaerica|type=transcript|length=33622bp|location=Sequence derived from alignment at sc0000054:498987..532608+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000054:498987..532608+ >TCONS_00005591 ID=TCONS_00005591|Name=TCONS_00005591|organism=Clytia hemisphaerica|type=CDS|length=8310bp|location=Sequence derived from alignment at sc0000054:498987..532608+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005591 vs. Swiss-Prot (Human)
Match: RAB36 (Ras-related protein Rab-36 OS=Homo sapiens GN=RAB36 PE=2 SV=2) HSP 1 Score: 234.572 bits (597), Expect = 6.665e-71 Identity = 110/236 (46.61%), Postives = 161/236 (68.22%), Query Frame = 3
Query: 204 VAMDGVINNFPPPFTEYACPRRGQANFHQKTRAACKDGTAGNVGLKVVKSIVIGDLSVGKTSLINRYCRNLFEKDYKPTIGVEFELKKYMIIGQEFHMQMWDTSGEERFKSITGAYYRGAHVVIVVFDLNDPHSFHATNNWLNDALDKTRNTTPEIFLIGNKLDLMKEHILESVREKSINLANEINAEYWEVSAKSGENVKEMFARVAVLCFDQAVLRETENLRDTSKPQIGSGGI 911
V+ D VI +FP +T AC + + +FH + AAC+ G VGLK+ K +V+GDL VGKTSLI+R+C+N+F++DYK TIGV+FE++++ I G + +Q+WDT+G+E+FK I AYYRGA V+I FDL D + T WL DAL + + IFL+G K DL+ E +++LA E+ AEYW VSAK+GENVK F+RVA L F+Q+VL++ E + +++ Q+G+G +
Sbjct: 78 VSRDRVIASFPKWYTPEACLQL-REHFHGQVSAACQRRNTGTVGLKLSKVVVVGDLYVGKTSLIHRFCKNVFDRDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDALRENEAGSCFIFLVGTKKDLLSGAACEQAEADAVHLAREMQAEYWSVSAKTGENVKAFFSRVAALAFEQSVLQDLER-QSSARLQVGNGDL 311 The following BLAST results are available for this feature:
BLAST of TCONS_00005591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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