TCONS_00005591-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005591-protein
Unique NameTCONS_00005591-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005591-protein ID=TCONS_00005591-protein|Name=TCONS_00005591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
MDGVINNFPPPFTEYACPRRGQANFHQKTRAACKDGTAGNVGLKVVKSIV
IGDLSVGKTSLINRYCRNLFEKDYKPTIGVEFELKKYMIIGQEFHMQMWD
TSGEERFKSITGAYYRGAHVVIVVFDLNDPHSFHATNNWLNDALDKTRNT
TPEIFLIGNKLDLMKEHILESVREKSINLANEINAEYWEVSAKSGENVKE
MFARVAVLCFDQAVLRETENLRDTSKPQIGSGGIKTSRNQSQTIVLGRAD
SPSGSPDYIHRAYSKDKKSKCCGGPT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003175XLOC_003175Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005591TCONS_00005591Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 87..109
score: 32.49
coord: 187..209
score: 33.98
coord: 46..67
score: 40.14
coord: 150..163
score: 43.45
coord: 69..85
score: 36.39
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 46..212
e-value: 3.0E-48
score: 176.3
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 43..212
e-value: 1.2E-11
score: 47.5
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 48..212
e-value: 5.1E-12
score: 34.2
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 51..259
e-value: 5.8E-7
score: 39.1
NoneNo IPR availableGENE3D3.40.50.300coord: 110..210
e-value: 3.8E-27
score: 93.7
NoneNo IPR availableGENE3D3.30.70.1390coord: 44..109
e-value: 1.5E-22
score: 78.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..260
NoneNo IPR availablePROSITEPS51419RABcoord: 38..272
score: 25.85
NoneNo IPR availableCDDcd00154Rabcoord: 46..206
e-value: 1.54167E-64
score: 200.76
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 47..203
e-value: 1.9E-22
score: 77.7
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 47..206
e-value: 6.8E-46
score: 155.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 46..206

Blast
[Close]
BLAST of TCONS_00005591-protein vs. Swiss-Prot (Human)
Match: RAB36 (Ras-related protein Rab-36 OS=Homo sapiens GN=RAB36 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 2.144e-75
Identity = 109/233 (46.78%), Postives = 159/233 (68.24%), Query Frame = 0 
Query:    2 DGVINNFPPPFTEYACPRRGQANFHQKTRAACKDGTAGNVGLKVVKSIVIGDLSVGKTSLINRYCRNLFEKDYKPTIGVEFELKKYMIIGQEFHMQMWDTSGEERFKSITGAYYRGAHVVIVVFDLNDPHSFHATNNWLNDALDKTRNTTPEIFLIGNKLDLMKEHILESVREKSINLANEINAEYWEVSAKSGENVKEMFARVAVLCFDQAVLRETENLRDTSKPQIGSGGI 234
            D VI +FP  +T  AC +  + +FH +  AAC+    G VGLK+ K +V+GDL VGKTSLI+R+C+N+F++DYK TIGV+FE++++ I G  + +Q+WDT+G+E+FK I  AYYRGA V+I  FDL D  +   T  WL DAL +    +  IFL+G K DL+     E     +++LA E+ AEYW VSAK+GENVK  F+RVA L F+Q+VL++ E  + +++ Q+G+G +
Sbjct:   81 DRVIASFPKWYTPEACLQL-REHFHGQVSAACQRRNTGTVGLKLSKVVVVGDLYVGKTSLIHRFCKNVFDRDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDALRENEAGSCFIFLVGTKKDLLSGAACEQAEADAVHLAREMQAEYWSVSAKTGENVKAFFSRVAALAFEQSVLQDLER-QSSARLQVGNGDL 311
The following BLAST results are available for this feature:
BLAST of TCONS_00005591-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB362.144e-7546.78Ras-related protein Rab-36 OS=Homo sapiens GN=RAB3... [more]
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