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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005578 ID=TCONS_00005578|Name=TCONS_00005578|organism=Clytia hemisphaerica|type=transcript|length=1826bp
CAAAGAGTTGGTTTACTGCGCCATTCAAGCTCgatattttttcatattct
taCATTTACAATGACTGGGCTGTTATAAGTATAAAATACTGGCTGTGATT
AaaagtttttgtcaaaaaaaatataaGGTCCGTATTGAAAAGTTCCGTAT
TTTCTTTCACTGCTGGTATAAAAATTGCGTAATAATCACTTTAACAACGT
TAAGGTATGCCCTTGTTATTTCCGGTTTGAGAGCTAAGTAGAAACGAAAT
TTTAAACCATAAATGCTACAATGTAAACGTTGTATTTGACAATAGATTTT
CATATATTTGAATTCTGCAGGATTTAGACATCGAGCTTGAATCAACATGA
TTAATTCTACTGGCTGTATTTGTCATTAAACTTTCATCGTATGCAATTTA
ACATTTGTTTTTTCTCCGAcagatgaaaattgaaaaaatatgttgAACAA
CACGAGCTTGGAGATGTCTGTAGGCGTGAATGGAGTTTCGTGCCCGCCTT
TCGGTTTACTGCTGGTGGGAACGCCCTTAGCAACTAATATTTATTTATCT
ATTGCAAGTGTAGCAACCTTTCTTTCCTTGTGTGCTATCGTGCTGAATCT
TCTGGTTTTAATAGCGCTTTTATCATTACAACAATACCGTACAAACTTTT
TACTCATCCTTTTAAACGTGGTTGACTTGTTCAGTGGATTGATTTTGCTC
CCTTCCTATGCTTACTACATGTGGGAACTACATCAAGGAAGGTtggaatg
tatttttggtaGAACATTAATGGTGATAGGGTATTGTTTGACAATCATTA
GTTGCTCCACTATCGCTTTCATCACAGCACAACTTTACAGTGCTATTTTC
AATCCGTTTGGCCATCACCGCTGGTCTCGAAAGTCAAACTGTCTACCTAT
CGTATTCATGTGTTGGTTTGGCCTTGCTGTTTTGGTGTTTCTGTTTGCAT
TTATACTGACAGTGTATTGGAAAATGTTTAAGTTGTGCGTTGGAGGGATT
TTCTTTACCATCTACGTGATTTTAGTGATTGCGCACAAAAAAGTATATGC
AGGCACTCAACGCATCGCCAAGTTTACGCATCACCAACAAAACGATCAAA
AACTCGTCCTCCAACGACGTACATTTAAAATGATAACGACGGTTTTGATA
GCATTCGGTTTATGTTACCTGCCGTATATCATTTTCGCTCTTTACATCGC
TATCAAAGGGATCAATCCTGAAATAAGAAGTTTCTATGGACCATGGGTGG
AAGTGATGGCTATGAGTAGTTCAGTTTTCAATCCCGTCATCTATTGTTTT
CGTTTGAAATCCATACGAAGAAAAGTCATCATTCTGTTATGTTGTAAAAA
GACATTGCGTCAAACATCTCGTAAATTCTCCGTCATCAAACAACAGACTG
GCATACCACTGACCTCAATCAGTTTAAGTGTGCTGACGAGTAGCATTACG
TCATTGTCCAGCATTAAGTTCAACCATCAGAGTAAATACCATGACAAAAA
CAGCAACAATCACAAAATCATTTGCAAAACACTCAGTCAACCCAAAAATG
TACTCAATCccaaaaacaaagacatttcaACATTGGACGGGATTCATAGA
CATCAAGCTTCCGTATTGAAGCAAGCCCGCTATTTATATATTCCGTGATT
TGCTTTTATTAGTCACATGGGATTAGTTTTTGGGAAAAAACAAATACAGT
Taacgttctctaattcgatcttcaaggggaattggattttcatcggataa
gggagcttatcgaataagggaacgtcgtttatgagagtttcttgttgaca
gggactttaaatttcatcgaataagg Run BLAST on NCBI transcript from alignment at sc0000054:358046..359871+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005578 ID=TCONS_00005578|Name=TCONS_00005578|organism=Clytia hemisphaerica|type=transcript|length=1826bp|location=Sequence derived from alignment at sc0000054:358046..359871+ (Clytia hemisphaerica)
CAAAGAGTTGGTTTACTGCGCCATTCAAGCTCgatattttttcatattct
taCATTTACAATGACTGGGCTGTTATAAGTATAAAATACTGGCTGTGATT
AaaagtttttgtcaaaaaaaatataaGGTCCGTATTGAAAAGTTCCGTAT
TTTCTTTCACTGCTGGTATAAAAATTGCGTAATAATCACTTTAACAACGT
TAAGGTATGCCCTTGTTATTTCCGGTTTGAGAGCTAAGTAGAAACGAAAT
TTTAAACCATAAATGCTACAATGTAAACGTTGTATTTGACAATAGATTTT
CATATATTTGAATTCTGCAGGATTTAGACATCGAGCTTGAATCAACATGA
TTAATTCTACTGGCTGTATTTGTCATTAAACTTTCATCGTATGCAATTTA
ACATTTGTTTTTTCTCCGAcagatgaaaattgaaaaaatatgttgAACAA
CACGAGCTTGGAGATGTCTGTAGGCGTGAATGGAGTTTCGTGCCCGCCTT
TCGGTTTACTGCTGGTGGGAACGCCCTTAGCAACTAATATTTATTTATCT
ATTGCAAGTGTAGCAACCTTTCTTTCCTTGTGTGCTATCGTGCTGAATCT
TCTGGTTTTAATAGCGCTTTTATCATTACAACAATACCGTACAAACTTTT
TACTCATCCTTTTAAACGTGGTTGACTTGTTCAGTGGATTGATTTTGCTC
CCTTCCTATGCTTACTACATGTGGGAACTACATCAAGGAAGGTtggaatg
tatttttggtaGAACATTAATGGTGATAGGGTATTGTTTGACAATCATTA
GTTGCTCCACTATCGCTTTCATCACAGCACAACTTTACAGTGCTATTTTC
AATCCGTTTGGCCATCACCGCTGGTCTCGAAAGTCAAACTGTCTACCTAT
CGTATTCATGTGTTGGTTTGGCCTTGCTGTTTTGGTGTTTCTGTTTGCAT
TTATACTGACAGTGTATTGGAAAATGTTTAAGTTGTGCGTTGGAGGGATT
TTCTTTACCATCTACGTGATTTTAGTGATTGCGCACAAAAAAGTATATGC
AGGCACTCAACGCATCGCCAAGTTTACGCATCACCAACAAAACGATCAAA
AACTCGTCCTCCAACGACGTACATTTAAAATGATAACGACGGTTTTGATA
GCATTCGGTTTATGTTACCTGCCGTATATCATTTTCGCTCTTTACATCGC
TATCAAAGGGATCAATCCTGAAATAAGAAGTTTCTATGGACCATGGGTGG
AAGTGATGGCTATGAGTAGTTCAGTTTTCAATCCCGTCATCTATTGTTTT
CGTTTGAAATCCATACGAAGAAAAGTCATCATTCTGTTATGTTGTAAAAA
GACATTGCGTCAAACATCTCGTAAATTCTCCGTCATCAAACAACAGACTG
GCATACCACTGACCTCAATCAGTTTAAGTGTGCTGACGAGTAGCATTACG
TCATTGTCCAGCATTAAGTTCAACCATCAGAGTAAATACCATGACAAAAA
CAGCAACAATCACAAAATCATTTGCAAAACACTCAGTCAACCCAAAAATG
TACTCAATCccaaaaacaaagacatttcaACATTGGACGGGATTCATAGA
CATCAAGCTTCCGTATTGAAGCAAGCCCGCTATTTATATATTCCGTGATT
TGCTTTTATTAGTCACATGGGATTAGTTTTTGGGAAAAAACAAATACAGT
Taacgttctctaattcgatcttcaaggggaattggattttcatcggataa
gggagcttatcgaataagggaacgtcgtttatgagagtttcttgttgaca
gggactttaaatttcatcgaataagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005578-exon-sc0000054-1491911889:358046..359871 | TCONS_00005578-exon-sc0000054-1491911889:358046..359871 | Clytia hemisphaerica | exon |
| TCONS_00005578-exon-sc0000054-1510915933:358046..359871 | TCONS_00005578-exon-sc0000054-1510915933:358046..359871 | Clytia hemisphaerica | exon |
| TCONS_00005578-exon-sc0000054-1575043694:358046..359871 | TCONS_00005578-exon-sc0000054-1575043694:358046..359871 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:358046..359871 + |
Blast
The following BLAST results are available for this feature:
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