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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005575 ID=TCONS_00005575|Name=TCONS_00005575|organism=Clytia hemisphaerica|type=transcript|length=4499bpRun BLAST on NCBI transcript from alignment at sc0000054:341852..353949+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005575 ID=TCONS_00005575|Name=TCONS_00005575|organism=Clytia hemisphaerica|type=transcript|length=12098bp|location=Sequence derived from alignment at sc0000054:341852..353949+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005575 vs. Swiss-Prot (Human)
Match: DOCK9 (Dedicator of cytokinesis protein 9 OS=Homo sapiens GN=DOCK9 PE=1 SV=2) HSP 1 Score: 984.941 bits (2545), Expect = 0.000e+0 Identity = 570/1441 (39.56%), Postives = 817/1441 (56.70%), Query Frame = 1
Query: 1 PLKCLYQRNGVCTFTHQIVCPVLHHNTTPAFFEEIKILLPPQLEKKHHVLFTFHHVSVEQPKESKEKKKDVM-TPVGYSWMAVLDQHVIRGDENSLPVALYLPESYMYSDTVNEGLNGNMGGKTNGPDIKWADGKGQKIFKVNAKLISTIYSQDSHINNLFSHWALCGDGRPSADVEMSRLLKLMHAVDVELVIKFLPVVLNMLFHVLIQTNNEDVAVNVVSLLIRITSMMHTANKNHFLKSYVEYTFQME---SIKNKTVHEELAKNLIFYLRLGADPTMIANILQHSWFFFDVMVKSMAHSHMGRAKKNAFESRKGRFNNDYTKTLENLFKVFIDQLVNRAKEKATVVKEANVNLGKFIRDCLTHMDRGFVFEIVNYLKDQYNPPDTQ-MFELKFELLRCISEHEHFVPLNFPFD-----IRKKGDVH-ESTLNDYYCKRHFLVGVLLREFSNALYQPKAIRKYALRVLRNLLAKHEFDERYIGNVEKQSRIAGLYIPYLTMMLEHSLRFHKNLDRP-------KIDDSLLSIHRIAP-TTPSH----------------DGNMSPILMKRXXXXXXXXXXXXXXIMSLTGSGKVPP------------------------ILPFEDDEAREFLLCFSFLLKNLHSSIVVDWWREILTTPIKRPHVNAATFYYRQCEKHFAKFLAIIDFFDLLEQCVKRLKYNGSANLEKTNVTAESTKQFFENKYASLTRPSPRLSVGNSHRRQLXXXXXXXXXXXDYELEKKSLLEANLANEVAVTVLDMIELFITHFKFHLEQDDGDNVLMKKLFNVLMTFLRIGQSEEVMKYVFASLRSFMHKFSSVLFHGSANVCGVLCYEILRLCNSKIESVRTQACCFMYLLMRSNYEFSGKGC-ARVHHQVIVAVSKLIA--AGMNRHSMLQSLIILKNYSVDDKGMKSTEFPAEVRDLIKKVHTVLLATAQMKEHEDDHEVLVDLQYSLAKSYSSTPELRQTWLQSMALIHEKHGDYSESAMCYIHSAALVAEYL----------------------KSRGE-YPGGSSLFRNMSSNIVPDESLTVDDGGDNSELIYRTKNLIDLLEVSADRIRMSERYELMGEIYKIAIPLYELERNFPLLAIAYGTLKESYEKVVAVMETGKRMLGRYYRVAFYGRV---------------FKSNDGKEFIYKEPKLTSLPEISQRLNEKYDQKYG--NVKLIMDSAKVKPEELNPAVNYIQVTFVEPYFDEDELKQRVTAFERENNIRRFVFETPFTLSGKARGSLSEQHKRKTILTTSHSFPYVKKRILVVQQEQYELSPIEVAIDEMQNKVIDLNQVINLDPPDMKKLQLRLAGSVSVQVNAGPMAYAETFLDNEVVKNYMSKHVEALQQTYRDFVKVCGNAINVNEILIQKDQTAYHEDLKERYEVLKTKIAD 4017
PLKC+Y R G FT VLHH+ P F++EIKI LP QL +KHH+L TF HVS + + KK+DV+ T VGYSW+ +L + E +PV+ LP Y+ G G+ GP+IKW DG G+ + K++ L+ST+Y+QD H++N F + G + E+ + LK +HA++ ++I FLP +LN LF VL + E+VAVNV ++I + + H L+SYV+Y ++ E + + KTVHEEL K++ L+ AD +L++SWFFFDV++KSMA + +K R RF Y +E + + + + + ++ K AN +L FI+ C T MDRGFVF+ +N + P D + +FE KFE LR + HEH++PLN P I++ D+ + +L D +C+ HFLVG+LLRE AL + + +R A+ VL+NLL KH FD+RY + Q+RIA LY+P +++E+ R + P + D L++ + P TP G SP + S + S++S +P + E + L+CF ++LK++ + +W + T+ ++DFF + E C+ + +Y G + +T + +Q SL L+ +S+ D ++ +SLLEAN+A EV +T LD + LF FK L D G N LMKK+F+V + FL+ QSE +K VF +LRS ++KF S + G A++C LCYEIL+ CNSK+ S+RT+A +Y LMR+N++++GK R H QVI++VS+LIA G+ QSL I+ N + D+ +K T F ++V+DL K++ TVL+ATAQMKEHE+D E+LVDLQYSLAKSY+STPELR+TWL SMA IH K+GD SE+AMCY+H ALVAEYL +SRG + G + FR ++ NI + S+ D G ++ + L++LLE AD + +ERYEL+ +IYK+ IP+YE R+F LA Y TL +Y KV VM +G+R+LG Y+RVAF+G+ F+ DGKE+IYKEPKLT L EISQRL + Y K+G NVK+I DS KV P++L+ YIQVT V P+FDE EL++R T FER +NIRRF+FE PFT +GK +G + EQ KR+TILT H FPYVKKRI V+ Q +L+PIEVAIDEM KV +L Q+ + DM KLQL+L GSVSVQVNAGP+AYA FLD+ K Y V+ L++ +R FV+ CG A+ VNE LI++DQ Y E++K Y + ++++
Sbjct: 680 PLKCIYGRPGGPVFTRSAFAAVLHHHQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSSKGSTKKRDVVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYL-------GYQELGMGRHYGPEIKWVDG-GKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQALGNELVKYLKSLHAMEGHVMIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKYAYKAEPYVASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENSKVKLL--RNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRLIAISVLKNLLIKHSFDDRY-ASRSHQARIATLYLPLFGLLIENVQRINVRDVSPFPVNAGMTVKDESLALPAVNPLVTPQKGSTLDNSLHKDLLGAISGIASPYTTSTPNINSVRNADSRGSLISTDSGNSLPERNSEKSNSLDKHQQSSTLGNSVVRCDKLDQSEIKSLLMCFLYILKSMSDDALFTYWNKASTS-------------------------ELMDFFTISEVCLHQFQYMGKRYIARTGMMHARLQQL-----GSLDN---SLTFNHSYGHS------------DADVLHQSLLEANIATEVCLTALDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSETALKNVFTALRSLIYKFPSTFYEGRADMCAALCYEILKCCNSKLSSIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKEAVQWEPPLLPHSHSACLRRSRGGVFRQGCTAFRVITPNIDEEASMMEDVG--MQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQAAQYQFTDSETDVEGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHVIPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMAKELSE 2062 The following BLAST results are available for this feature:
BLAST of TCONS_00005575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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