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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005526 ID=TCONS_00005526|Name=TCONS_00005526|organism=Clytia hemisphaerica|type=transcript|length=1584bp
ACACTTTTTGAGCCTTATTACCCGACTAGGGTGATGTCTCCGTTTATTTG
TGCGATAAATATTGTTGAGACACAAGTCGCCTGTGAgaaatgttttgttt
attttcggaattgtttcatttttgtttcattttcttgTTCTTTATAGAGA
TAATAACAAGCTTAGTAACAActcaaaacatataaaaaaggacaattttg
acaaaaatattggatACCATCAAATATTAAACGAGTACCAAATGACGAAA
CTCGCAGTTTTAACCTCTAGCCATACTGGAGTGTTAAAAGAAGAGTTTCT
AGGGATAGAATCTGGTGAAGAGAAATTACCGAGACCGAAGAAAATAACAA
AGAAATCACGACATACGACTGGAGCAGTTTCGTCAACACATCAATCGAAT
TCtaacaaagaaaaatcattatTGAAAAAGGATGTTTTTTGGCAAATAAG
CGAACCAGTTGATACCCAAGAAAATATGGACTATTTTTTATCCTCATTAA
TGGTAAATGAAGAATTCTCGTTTAGCGACGACTTTTTAAACGAACTTGAT
CTTACGCCGACAATAGTACCAACAACAACACGACAAAATTTGACGGTACA
ACAACAATCATTGAATCAAGCATTCCCAATAGTTGATAATTGTGAAAACC
ATCGGCAGCGACAGTCATTTGATAGCGTTTCAAGTACATCTGATGACAGT
CTTGGTAGCATGGAAAGTGTCGAAGAACCGTACAATATGGTAAAAGTAcc
aaattttaatcaaaatcaATATCATAAAGAAAGTCATACTTTAAAACTAC
CCTCGTATGATTATTGCGCCACTGCGCAAAAAGAACAATATTGTCAAATG
AACACTAAACCTACACTTCACAATATTGAATCTAAAACAATAAATAGGGG
CGGTTCTGCAAAACGCCCATCAAACTCGAGGCGTCAATCTGGCGCAACCA
GTAAACGAAAAATCGATTCAGTCTATAACAACGATCCTTATCTACAACGC
CATCGGTTATTAGTAAATGCACGCCAGAAAAACCGAATGATGAAAATTAA
TAATATGTATACAATGCTAAACTCTCTCATCCCGGAACAAGTTTTGTGTG
AAGCTAATGTTAAACCCCACTCCAAATTGGGTATTTTAAAACGAGCTATT
GTATATTGGAGCTCTTTAGCAGACACTTTGAACACGCCCGCGCCCACACC
AGTGGATGCAGATTCTATGCTAATGGAAAATGATCAAACTTCATCATTAT
TGAATACTGTACctatcaaaaaagaagaacaaccAGAGCAAAGCAATTAT
TGTTTAATGAGCACTCTGAATAATCTTTCCAactgaaatataattttgat
tttgattttattttagtaTCTTTAGTAATAAGTAATAATAAAACAAAGTA
TTCAAAATTGAGAgctttattttacaaatctttgtctcaaattttccttt
tcttgAAATAATTAGGCCATAATTTTATTGCTCATTTGAGCCCTTATAGT
CTTTACAAGATAGACGtataatttcaaactttaaaagtattaaaaaatTG
TAGTAAATTAGTTAAAAAACATTGTAAATATTAG Run BLAST on NCBI protein sequence of TCONS_00005526-protein >TCONS_00005526-protein ID=TCONS_00005526-protein|Name=TCONS_00005526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
MTKLAVLTSSHTGVLKEEFLGIESGEEKLPRPKKITKKSRHTTGAVSSTH
QSNSNKEKSLLKKDVFWQISEPVDTQENMDYFLSSLMVNEEFSFSDDFLN
ELDLTPTIVPTTTRQNLTVQQQSLNQAFPIVDNCENHRQRQSFDSVSSTS
DDSLGSMESVEEPYNMVKVPNFNQNQYHKESHTLKLPSYDYCATAQKEQY
CQMNTKPTLHNIESKTINRGGSAKRPSNSRRQSGATSKRKIDSVYNNDPY
LQRHRLLVNARQKNRMMKINNMYTMLNSLIPEQVLCEANVKPHSKLGILK
RAIVYWSSLADTLNTPAPTPVDADSMLMENDQTSSLLNTVPIKKEEQPEQ
SNYCLMSTLNNLSN Run BLAST on NCBI transcript from alignment at sc0000053:460492..462075 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005526 ID=TCONS_00005526|Name=TCONS_00005526|organism=Clytia hemisphaerica|type=transcript|length=1584bp|location=Sequence derived from alignment at sc0000053:460492..462075 (Clytia hemisphaerica)
CTAATATTTACAATGTTTTTTAACTAATTTACTACAattttttaatactt
ttaaagtttgaaattataCGTCTATCTTGTAAAGACTATAAGGGCTCAAA
TGAGCAATAAAATTATGGCCTAATTATTTcaagaaaaggaaaatttgaga
caaagatttgtaaaataaagcTCTCAATTTTGAATACTTTGTTTTATTAT
TACTTATTACTAAAGAtactaaaataaaatcaaaatcaaaattatatttc
agtTGGAAAGATTATTCAGAGTGCTCATTAAACAATAATTGCTTTGCTCT
ggttgttcttcttttttgatagGTACAGTATTCAATAATGATGAAGTTTG
ATCATTTTCCATTAGCATAGAATCTGCATCCACTGGTGTGGGCGCGGGCG
TGTTCAAAGTGTCTGCTAAAGAGCTCCAATATACAATAGCTCGTTTTAAA
ATACCCAATTTGGAGTGGGGTTTAACATTAGCTTCACACAAAACTTGTTC
CGGGATGAGAGAGTTTAGCATTGTATACATATTATTAATTTTCATCATTC
GGTTTTTCTGGCGTGCATTTACTAATAACCGATGGCGTTGTAGATAAGGA
TCGTTGTTATAGACTGAATCGATTTTTCGTTTACTGGTTGCGCCAGATTG
ACGCCTCGAGTTTGATGGGCGTTTTGCAGAACCGCCCCTATTTATTGTTT
TAGATTCAATATTGTGAAGTGTAGGTTTAGTGTTCATTTGACAATATTGT
TCTTTTTGCGCAGTGGCGCAATAATCATACGAGGGTAGTTTTAAAGTATG
ACTTTCTTTATGATATtgattttgattaaaatttggTACTTTTACCATAT
TGTACGGTTCTTCGACACTTTCCATGCTACCAAGACTGTCATCAGATGTA
CTTGAAACGCTATCAAATGACTGTCGCTGCCGATGGTTTTCACAATTATC
AACTATTGGGAATGCTTGATTCAATGATTGTTGTTGTACCGTCAAATTTT
GTCGTGTTGTTGTTGGTACTATTGTCGGCGTAAGATCAAGTTCGTTTAAA
AAGTCGTCGCTAAACGAGAATTCTTCATTTACCATTAATGAGGATAAAAA
ATAGTCCATATTTTCTTGGGTATCAACTGGTTCGCTTATTTGCCAAAAAA
CATCCTTTTTCAataatgatttttctttgttaGAATTCGATTGATGTGTT
GACGAAACTGCTCCAGTCGTATGTCGTGATTTCTTTGTTATTTTCTTCGG
TCTCGGTAATTTCTCTTCACCAGATTCTATCCCTAGAAACTCTTCTTTTA
ACACTCCAGTATGGCTAGAGGTTAAAACTGCGAGTTTCGTCATTTGGTAC
TCGTTTAATATTTGATGGTatccaatatttttgtcaaaattgtccttttt
tatatgttttgagTTGTTACTAAGCTTGTTATTATCTCTATAAAGAAcaa
gaaaatgaaacaaaaatgaaacaattccgaaaataaacaaaacatttcTC
ACAGGCGACTTGTGTCTCAACAATATTTATCGCACAAATAAACGGAGACA
TCACCCTAGTCGGGTAATAAGGCTCAAAAAGTGT Coding sequence (CDS) from alignment at sc0000053:460492..462075 >TCONS_00005526 ID=TCONS_00005526|Name=TCONS_00005526|organism=Clytia hemisphaerica|type=CDS|length=1095bp|location=Sequence derived from alignment at sc0000053:460492..462075 (Clytia hemisphaerica)
tcagtTGGAAAGATTATTCAGAGTGCTCATTAAACAATAATTGCTTTGCT
CTggttgttcttcttttttgatagGTACAGTATTCAATAATGATGAAGTT
TGATCATTTTCCATTAGCATAGAATCTGCATCCACTGGTGTGGGCGCGGG
CGTGTTCAAAGTGTCTGCTAAAGAGCTCCAATATACAATAGCTCGTTTTA
AAATACCCAATTTGGAGTGGGGTTTAACATTAGCTTCACACAAAACTTGT
TCCGGGATGAGAGAGTTTAGCATTGTATACATATTATTAATTTTCATCAT
TCGGTTTTTCTGGCGTGCATTTACTAATAACCGATGGCGTTGTAGATAAG
GATCGTTGTTATAGACTGAATCGATTTTTCGTTTACTGGTTGCGCCAGAT
TGACGCCTCGAGTTTGATGGGCGTTTTGCAGAACCGCCCCTATTTATTGT
TTTAGATTCAATATTGTGAAGTGTAGGTTTAGTGTTCATTTGACAATATT
GTTCTTTTTGCGCAGTGGCGCAATAATCATACGAGGGTAGTTTTAAAGTA
TGACTTTCTTTATGATATtgattttgattaaaatttggTACTTTTACCAT
ATTGTACGGTTCTTCGACACTTTCCATGCTACCAAGACTGTCATCAGATG
TACTTGAAACGCTATCAAATGACTGTCGCTGCCGATGGTTTTCACAATTA
TCAACTATTGGGAATGCTTGATTCAATGATTGTTGTTGTACCGTCAAATT
TTGTCGTGTTGTTGTTGGTACTATTGTCGGCGTAAGATCAAGTTCGTTTA
AAAAGTCGTCGCTAAACGAGAATTCTTCATTTACCATTAATGAGGATAAA
AAATAGTCCATATTTTCTTGGGTATCAACTGGTTCGCTTATTTGCCAAAA
AACATCCTTTTTCAataatgatttttctttgttaGAATTCGATTGATGTG
TTGACGAAACTGCTCCAGTCGTATGTCGTGATTTCTTTGTTATTTTCTTC
GGTCTCGGTAATTTCTCTTCACCAGATTCTATCCCTAGAAACTCTTCTTT
TAACACTCCAGTATGGCTAGAGGTTAAAACTGCGAGTTTCGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005526-exon-sc0000053-1491911889:460492..462075 | TCONS_00005526-exon-sc0000053-1491911889:460492..462075 | Clytia hemisphaerica | exon |
| TCONS_00005526-exon-sc0000053-1510915933:460492..462075 | TCONS_00005526-exon-sc0000053-1510915933:460492..462075 | Clytia hemisphaerica | exon |
| TCONS_00005526-exon-sc0000053-1575043694:460492..462075 | TCONS_00005526-exon-sc0000053-1575043694:460492..462075 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:460492..462075 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
The following BLAST results are available for this feature:
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