TCONS_00005491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005491
Unique NameTCONS_00005491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005491 ID=TCONS_00005491|Name=TCONS_00005491|organism=Clytia hemisphaerica|type=transcript|length=2878bp
CATCTCGGTGTAGCAGCTGGGCAACCCTTAACCGAAGAACATTTAAAAGT
TTTCGAAACATTCGATGGTGGACGAGAATTACTCGTAGAAATCCGGGAAA
AACTCGGTCTTGAAGCCGATCAACCAATAAACGAGCATCATTTATTAAAA
CTCGAAAGTGTTGAAGGTGGCCTTCTATTGGTCGAAAAGATTCGGCAAAA
GTTCGGATTTGCTACTGGTTATGCGACCGGCCGAATTTCATCTCATGAGG
GGAGCGTGGCTGGGCAATCTATTCTCGGTGGCGCTCAAAAACCTGGAGCT
GAAACGACCATTACCGATGAAATGCGGCAAAAACTCGGGTTAGGAGTCGG
TCAAACTCTAACTGCCGAACAATTACAAAAACTCGGCATCAGTCATACAG
GCCTTTTGGCTGGTCAGCTTNTTAACGGATGAAATGCAACAAAAACTTAA
CTTACAAACAAGCTCTGTCGTCGGGAGTGGACAGTCGTTGACCGACGAAA
TTCGGCAACACCTCGGTGTAGCGGTAGGGCAGCCCTTAACCGAAGAACAT
TTAAAAGTTTTCGAAACACTCGATGGTGGACGAGAATTACTCGTAAAAAT
TCGGGAAAAACTCGGTCTTGAAGTCAACCAACCAATAAACGAACAGCATT
TATTAAAACTCGAAAGTGTTGAAGGTGGTCATATATTGGTCGAAAAGATT
CGGCAAAAGTTCGGATTTGCAACTGGCTATGCAACTGGCCGCATTTCAAC
AGAAAGAGTCGGGTCTTTGACGGGGGAGTCAATTTTCGGAGGTGCTGTTC
CAAAACTTGGAACTGGGACGATAGCCGACGAAATGCAACAAAAACTTGGC
ATAGGAGTCGGCCAAACATTAATTAAAGAAATTCGGCAACATCTCGGTGT
AGCAGCTGGGCAACCCTTAACCGAAGAACATTTAAAAGTTTTCGAAACAT
TCGATGGTGGACGAGAATTACTCGTAGAAATCCGGGAAAAACTCGGCCTT
GAAGCCGATCAACCAATAAACGAGCATCATTTATTAAAACTCGAAAGTGT
TGAAGGTGGCCTTCTATTGGTCGAAAAGATTCGGCAAAAGTTCGGATTTG
CTACTGGTTATGCGACTGGCCGAATTTCATCTCATGAGGGGAGCGTGGCT
GGGCAATCTATTCTCGGTGGCGCTCAAAAACCTGGAGCTGAAACGACCAT
TACCGATGAAATGCGGCAAAAACTCGGGTTAGGAGTCGGTCAAACTCTAA
CTGCCGAACAATTACAAAAACTCGGCATCAGTCATACAGGTCTTTTGGCT
GGTCAGCTTGCTACAGGAGAACATTTGAATGCTGGAGGTGGTCAATCAAC
CTTAGCAGGTCAGACTCTCGCATCAAAGCAAGCACTGGCCGACGAAATTA
GACAAAAACCAGGTTTGGGCTCTACACAACCTTTAACAGAAGGCCATTTA
CAAAATCTCGGAATGGGAGATGATAAAGTAACAGAAGAACTTAAACTAAA
GCTTGGTCTTATATCTGGACAATCTTTAACTGGAAGTCATTTACAAAAAC
TTGGTGTGGGCTCAGATCAATCATTGACTGAGAAAATTCGACTAAAACTC
GGTCTTGAAGCAAGCCCAACAACAGACCCACAGCTCGGTCAAAATCTAAT
GGACTACTCATTGCATAATACTGGGAGTAATGCTGTAAATTCTAAtggtt
ttcttcaaaaaatatcaTCCGACCCAACTCTTACAATGAACATTAAAAAG
AAACTTCTTACAGAACTTTTAACAAATCCTTCTAGCCTATCCcctgaaca
aaaaaaacaaatgttaTTACAACTAACGAATGGACACCCAAATGCGCAGG
GTCTATCGGCGAATCAAGAAAACTCTGTTCCGTGCCATCCACAGCCTTGT
AACCAACCTCTTAATGCAAACCTACAAGACATTATATCACAAATTAAAAC
ACAACCAACTCCCTGCCAACCCAATGCAGGTAGTCTAGAAACGTTAACTC
CTACGAGGGCGCCTTGTAAACCAACAGGTAGCCCTTTAGCAGAAATGTCT
CAAAATAAATTGCCAGAAGAGCCTAGACTTCCAACAATGCCTGCAATACC
AAATCGGGGAGAAGAAGATTCCCCGATTATTTCGAATAATTTAATAGATA
AAtgtaaacaacaacaaactaCTATTGGAGCAGTTGGGCGACCAAATCCG
GTTCACCCAGTTAGTCCTTTACTTGACCCCGATAGTCCGTGTCGGTTACC
GGGTTCATTAACCGGTGGAATGGATTTGATTCAATTGATGGAATTGAAAG
CAAGAGCTGCCGAGAGTGGTGAAGCGATCATAGATGGCCATTGTTTTATT
GCAATTGATCTCGGGATCGCCATTGATACATCACGAGCTGCATACGAAAA
CTGGTCCCACATTCTTCCCTTCTTACAATCTCTCATCAAGCAATTCGAAG
TGGTCGGGAAATCCCGAATCGGAATAATAACATACAGTAATGAAGCCCGA
ATTGAAATCCCGTTCGGAGGTATATTAGGCAGATCGGGTTTATTTAAAAC
AGAGACTACATATAAAGAGAGACTTTCACAGATTCAACCTAATCCGAACG
GGTTTCAACGGAGAACCGATTTGGCTTTGAATAAAGCTATTGAGCTTTTT
TATAATGGTAGAAGACAGGTTCCAAAAGCATTGATTGTACTTGAACACGG
TGGCATTATCGGTCACGACCATACAGTCGATTGGCGAGCACTTCAACAAG
AGCCTGCTGATCGTTTGAGAAGTATCGGTGTCAACATTTTCACTGTCGGC
TTCACAAAACATGCTGACCCCGAAGAACTACAGTCATTGGCTGGTTCAGA
AAGTCACGTGATCTCTTTAGAAGGTAAG
Run BLAST on NCBI

transcript from alignment at sc0000053:561560..565808-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005491 ID=TCONS_00005491|Name=TCONS_00005491|organism=Clytia hemisphaerica|type=transcript|length=4249bp|location=Sequence derived from alignment at sc0000053:561560..565808- (Clytia hemisphaerica)
CATCTCGGTGTAGCAGCTGGGCAACCCTTAACCGAAGAACATTTAAAAGT
TTTCGAAACATTCGATGGTGGACGAGAATTACTCGTAGAAATCCGGGAAA
AACTCGGTCTTGAAGCCGATCAACCAATAAACGAGCATCATTTATTAAAA
CTCGAAAGTGTTGAAGGTGGCCTTCTATTGGTCGAAAAGATTCGGCAAAA
GTTCGGATTTGCTACTGGTTATGCGACCGGCCGAATTTCATCTCATGAGG
GGAGCGTGGCTGGGCAATCTATTCTCGGTGGCGCTCAAAAACCTGGAGCT
GAAACGACCATTACCGATGAAATGCGGCAAAAACTCGGGTTAGGAGTCGG
TCAAACTCTAACTGCCGAACAATTACAAAAACTCGGCATCAGTCATACAG
GCCTTTTGGCTGGTCAGCTTNTTAACGGATGAAATGCAACAAAAACTTAA
CTTACAAACAAGCTCTGTCGTCGGGAGTGGACAGTCGTTGACCGACGAAA
TTCGGCAACACCTCGGTGTAGCGGTAGGGCAGCCCTTAACCGAAGAACAT
TTAAAAGTTTTCGAAACACTCGATGGTGGACGAGAATTACTCGTAAAAAT
TCGGGAAAAACTCGGTCTTGAAGTCAACCAACCAATAAACGAACAGCATT
TATTAAAACTCGAAAGTGTTGAAGGTGGTCATATATTGGTCGAAAAGATT
CGGCAAAAGTTCGGATTTGCAACTGGCTATGCAACTGGCCGCATTTCAAC
AGAAAGAGTCGGGTCTTTGACGGGGGAGTCAATTTTCGGAGGTGCTGTTC
CAAAACTTGGAACTGGGACGATAGCCGACGAAATGCAACAAAAACTTGGC
ATAGGAGTCGGCCAAACATTAATTAAAGAAATTCGGCAACATCTCGGTGT
AGCAGCTGGGCAACCCTTAACCGAAGAACATTTAAAAGTTTTCGAAACAT
TCGATGGTGGACGAGAATTACTCGTAGAAATCCGGGAAAAACTCGGCCTT
GAAGCCGATCAACCAATAAACGAGCATCATTTATTAAAACTCGAAAGTGT
TGAAGGTGGCCTTCTATTGGTCGAAAAGATTCGGCAAAAGTTCGGATTTG
CTACTGGTTATGCGACTGGCCGAATTTCATCTCATGAGGGGAGCGTGGCT
GGGCAATCTATTCTCGGTGGCGCTCAAAAACCTGGAGCTGAAACGACCAT
TACCGATGAAATGCGGCAAAAACTCGGGTTAGGAGTCGGTCAAACTCTAA
CTGCCGAACAATTACAAAAACTCGGCATCAGTCATACAGGTCTTTTGGCT
GGTCAGCTTGCTACAGGAGAACATTTGAATGCTGGAGGTGGTCAATCAAC
CTTAGCAGGTCAGACTCTCGCATCAAAGCAAGCACTGGCCGACGAAATTA
GACAAAAACCAGGTTTGGGCTCTACACAACCTTTAACAGAAGGCCATTTA
CAAAATCTCGGAATGGGAGATGATAAAGTAACAGAAGAACTTAAACTAAA
GCTTGGTCTTATATCTGGACAATCTTTAACTGGAAGTCATTTACAAAAAC
TTGGTGTGGGCTCAGATCAATCATTGACTGAGAAAATTCGACTAAAACTC
GGTCTTGAAGCAAGCCCAACAACAGACCCACAGCTCGGTCAAAATCTAAT
GGACTACTCATTGCATAATACTGGGAGTAATGCTGTAAATTCTAATGGTT
TTCTTCAAAAAATATCATCCGACCCAACTCTTACAATGAACATTAAAAAG
AAACTTCTTACAGAACTTTTAACAAATCCTTCTAGCCTATCCCCTGAACA
AAAAAAACAAATGTTATTACAACTAACGAATGGACACCCAAATGCGCAGG
GTCTATCGGCGAATCAAGAAAACTCTGTTCCGTGCCATCCACAGCCTTGT
AACCAACCTCTTAATGCAAACCTACAAGACATTATATCACAAATTAAAAC
ACAACCAACTCCCTGCCAACCCAATGCAGGTAGTCTAGAAACGTTAACTC
CTACGAGGGCGCCTTGTAAACCAACAGGTAGCCCTTTAGCAGAAATGTCT
CAAAATAAATTGCCAGAAGAGCCTAGACTTCCAACAATGCCTGCAATACC
AAATCGGGGAGAAGAAGATTCCCCGATTATTTCGAATAATTTAATAGATA
AATGTAAACAACAACAAACTACTATTGGAGCAGTTGGGCGACCAAATCCG
GTTCACCCAGTTAGTCCTTTACTTGACCCCGATAGTCCGTGTCGGTTACC
GGGTTCATTAACCGGTGGAATGGATTTGATTCAATTGATGGAATTGAAAG
CAAGAGCTGCCGAGAGTGGTGAAGGTATGAAGTCATTTTTGAATGTATCC
CTTTACTATATGTGTAGATATGTAAAAATCCATAAATCTACCATATTAGT
AGTTAAGGTATAAATACTATCCAGACAATCTAAAAAGAATGACAAATAAC
TATTAAATGGCGACAAAAAGAACGACAAACCTTGACCCTAACTATCAAAG
AACGACATATTTCAAACCCTAACCCTAACTATCAAAGAAAGAAACGACAT
ATTTTCACGTTATATTTTTCAGCGATCATAGATGGCCATTGTTTTATTGC
AATTGATCTCGGGATCGCCATTGATACATCACGAGCTGCATACGAAAACT
GGTCCCACATTCTTCCCTTCTTACAATCTCTCATCAAGCAATTCGAAGTG
GTCGGGAAATCCCGAATCGGAATAATAACATACAGTAATGAAGCCCGAAT
TGAAATCCCGTTCGGAGGTATATTAGGCAGATCGGGTTTATTTAAAACAG
AGACTACATATAAAGAGAGACTTTCACAGATTCAACCTAATCCGAACGGG
TTTCAACGGAGAACCGATTTGGCTTTGAATAAAGCTATTGAGCTTTTTTA
TAATGGTAGAAGACAGGTTCCAAAAGCATTGATTGTACTTGAACACGGTG
GCATTATCGGTAAGATGTTTTCATTTGTTTATTAGATGGTTTGAGATTTT
TGGCCTGTATGCAGTTGTACTGAAGCTCCTTCGGTACACTTTAGTACCGC
CCACCTAGCGCTCACTAAACACCCAATAGCGCCTTCAATGCTCCACTGGG
CAGTAACTTAGCGATTGCTGCTCAGCCCTCTGGATCTTTAACTTTAGTGT
AGTTTGAACAACAAAGCGGGCGGACCAGCTCCAGGACCTAAGTATGTACG
TATCTTTTCTAATGTATTCAGAAATGTATAACCTTTGTACTCAATAATCC
AGATTCTCGGAACTACACAGTTTTCCATTAATGTTTGCAAATAAGATCAT
AAGATTCTACTTCTCTGGGCTCCTAAGCCCGTCCCCTTCGTAGCCCGGAC
TCACTCGTATACTGAGTTTGAGTTCGTTTGTTAGGCCAGCATCTGGACCA
GGCTCCAGTACACGAGTTTTAATACACAGTATATCTTTTATGCATGACGC
TTATGTTGGAATTATATTTTTTCTTTACTTTGGAGGATAGTTAAGACAAA
GATTTTGAATCTTGTTATAAGGACTATAGAAGCTATCTACAGATATTCAA
AAACCTCCTACATGTTGGGTCTTTAGATAGACCTTAGCTTTTCTGTGGGA
TGTGGCGTCTGGTGTGTTTATAAAGTCTGGTCAAACAGGGTCAAAGGAAA
TTGGCAGTCCGCACATTTAGATACTTTGCAACTGAAGGAGAAAAGACGTT
AGACCAAAAATAAATGTCTAATTAAAAATAGGAAATGGAAATAGGAAATA
GGAAAGTTTCAAGCTAAAGATGCGACCGTAGTGCAGTGGTAGAGCACCCG
CCTACGGTTTGCAAAGTTGTGGGTTCAACCCCCAGCCGGGTCATACCAAA
GATTCTCAAAATGGTACTTGATGCCTCTCTGCTTGATGCTCAGCAATTAA
GGGAAGACTCTAGGGTAAGTGGAGAAATCCAGGGAGAAAGAGTGGTGCCC
TCCCCTACCTTCGGGTAGATTAGCTATCGAAAGAGGAGTCTTTGGATCGC
CTCCGACTGCGGTCGCAGACTTACTTACTTAAAAACGTGTTAAAGAATCT
AAGATTGACACGTGATTATCATAAATGTTTAGGTCACGACCATACAGTCG
ATTGGCGAGCACTTCAACAAGAGCCTGCTGATCGTTTGAGAAGTATCGGT
GTCAACATTTTCACTGTCGGCTTCACAAAACATGCTGACCCCGAAGAACT
ACAGTCATTGGCTGGTTCAGAAAGTCACGTGATCTCTTTAGAAGGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003117XLOC_003117Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005491-exon-sc0000053-1575043694:563485..565808TCONS_00005491-exon-sc0000053-1575043694:563485..565808Clytia hemisphaericaexon
TCONS_00005491-exon-sc0000053-1575043694:562850..563236TCONS_00005491-exon-sc0000053-1575043694:562850..563236Clytia hemisphaericaexon
TCONS_00005491-exon-sc0000053-1575043694:561560..561726TCONS_00005491-exon-sc0000053-1575043694:561560..561726Clytia hemisphaericaexon
TCONS_00005491-exon-sc0000053-1510915933:563485..565808TCONS_00005491-exon-sc0000053-1510915933:563485..565808Clytia hemisphaericaexon
TCONS_00005491-exon-sc0000053-1510915933:562850..563236TCONS_00005491-exon-sc0000053-1510915933:562850..563236Clytia hemisphaericaexon
TCONS_00005491-exon-sc0000053-1510915933:561560..561726TCONS_00005491-exon-sc0000053-1510915933:561560..561726Clytia hemisphaericaexon
TCONS_00005491-exon-sc0000053-1491911889:563485..565808TCONS_00005491-exon-sc0000053-1491911889:563485..565808Clytia hemisphaericaexon
TCONS_00005491-exon-sc0000053-1491911889:562850..563236TCONS_00005491-exon-sc0000053-1491911889:562850..563236Clytia hemisphaericaexon
TCONS_00005491-exon-sc0000053-1491911889:561560..561726TCONS_00005491-exon-sc0000053-1491911889:561560..561726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:561560..565808 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0200466	0	1.05624	1.58917	0.247918	0	0.37455	0	1.09328	1.25893	0.00125714	0.852009	0.603644	0.478329	0	0	0	0	0.0392798	0	1.99795	1.55816	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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