|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005459 ID=TCONS_00005459|Name=TCONS_00005459|organism=Clytia hemisphaerica|type=transcript|length=2769bpRun BLAST on NCBI protein sequence of TCONS_00005459-protein >TCONS_00005459-protein ID=TCONS_00005459-protein|Name=TCONS_00005459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=820bp MVKSNQVTPLGQRKHKDRIGDVKDKNDTKEEVQSENPLPSPGVAAPTVDLRun BLAST on NCBI transcript from alignment at sc0000053:133619..147255- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005459 ID=TCONS_00005459|Name=TCONS_00005459|organism=Clytia hemisphaerica|type=transcript|length=13637bp|location=Sequence derived from alignment at sc0000053:133619..147255- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000053:133619..147255- >TCONS_00005459 ID=TCONS_00005459|Name=TCONS_00005459|organism=Clytia hemisphaerica|type=CDS|length=24630bp|location=Sequence derived from alignment at sc0000053:133619..147255- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005459 vs. Swiss-Prot (Human)
Match: ATP7B (Copper-transporting ATPase 2 OS=Homo sapiens GN=ATP7B PE=1 SV=4) HSP 1 Score: 209.92 bits (533), Expect = 1.353e-55 Identity = 159/533 (29.83%), Postives = 263/533 (49.34%), Query Frame = 3
Query: 828 LSALLVSAPSTVLLAETN-----QSVDIKEVAMGTVILVCAGEQIPLDGKVIKGKAAVDESSITGEATPVGKSTDSTVFSGTVIQSGYLKIETTSDYKTSTLSRVSEYIEEAKAASSNTEEILNRFAKFYTPLIVGVALLIFIVPLIVGKVKNG-----FTTEDMKIWSTR---------ALKVLVVACPCSLIIAVPVTMISGISRASKDGILVKGAQFLEKMASIQMFCFDKTGTLTEG-----RFQVVAEHHVSGERSDAVMYAAALETKSSHPVAAAIVNHFS----------------------GCITDKIEQF--GSQINLPDVTKFKNEAGMGLSGVVSEKE-------VLVGNLDLMQLYSVLVSDKEKTLLEDWSNMGRTVVFVANEGRLSLILGLADKVRDSSRETIQGLTQHNVRCCMLTGDTEGPARLISNETGIVEYSFSMKPHEKYEWLVSKQKQDKLKVAMCGDGVNDCPSLAAADVGIAIGPTATGLAVDSAGITLMSDDLSRVVTLLLLAKYCRTI 2261
L +L + + V L E N + V ++ V G ++ V G + P+DGKV++G DES ITGEA PV K STV +G++ G + I+ T +TL+++ + +EEA+ + + +++ +RF+ ++ P I+ ++ L +V +++G + G F + I T ++ VL +ACPCSL +A P ++ G A+++GIL+KG + LE I+ FDKTGT+T G R ++ + R + A E S HP+ A+ + GC +E S+ L NEAG + +EK+ VL+GN + ++ + +S + D G+T + VA +G L ++ +AD V+ + + L V ++TGD AR I+ + GI + + P K + Q + K KVAM GDGVND P+LA AD+G+AIG T T +A+++A + L+ +DL VV + L+K RT+
Sbjct: 795 LMSLQATEATVVTLGEDNLIIREEQVPMELVQRGDIVKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSTVIAGSINAHGSVLIKATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIMSTLTLVVWIVIGFIDFGVVQRYFPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPRVMRVLLLGDVATLPLRKVLAVVGTA-EASSEHPLGVAVTKYCKEELGTETLGYCTDFQAVPGCGIGCKVSNVEGILAHSERPLSAPASHLNEAG----SLPAEKDAVPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKQEAALAVHTLQSMGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNKGK-KVAMVGDGVNDSPALAQADMGVAIG-TGTDVAIEAADVVLIRNDLLDVVASIHLSK--RTV 1318 The following BLAST results are available for this feature:
BLAST of TCONS_00005459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.