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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005443 ID=TCONS_00005443|Name=TCONS_00005443|organism=Clytia hemisphaerica|type=transcript|length=847bp
GGAAAAATCATTTATAATACTTCTCTGTCATTTCAATTATTCTCTTAttc
gaaaaaaagaaacactttGAAGATCGAGTTAGAGAAAGTCAACTGTATAT
CTAAAACATCCATCATGGGGAAAATACACAACAATGAAATAACCATTGTC
AACCAGACAGGATATCAAATGGAGTTTTTTGGGGAATGGTTTGATTCTGG
TCGTGTTGCTGATGGCAATTGTTGGCCACATACTATCGGGAACGGTGAAA
AAGCGACAATACTCTGCTATGAACGTGATTGGGCATGGGCGGGATGCTCA
GGTTACGTCCAGTACAGATTGTGCGGGGATAGGACAAAGATTTTAACTAT
TGGATTTTCAAACCCCTCTGTCGGAAACAATAAAGTAGGGGTCGGTTTCA
CTGGCAAACAGGTGTGGGACAATATGACGAGTAACAATTACCGCCAACAT
CAATTCTCTCAATCTggattttcagctgttttccaATGCACTGGTGGTGA
AACAAACGTCTGCAGAGTTGAATTGGGTAGTGATCACCCATCTATAACGG
CTGCTATCTCATTACATTCTTCTTCTTTGATATGCATACCTTAAAATTTG
TATGATGACGATATCAATTGAGTGATCAGAGCTAATCAGCaacttttgca
tttttttcttgttaaGACTTATCAGCACCATACGCAGTACCATAGCTGGC
TAAACCGAAAGACATGATATCCTACATATCTTACGGGCGTACGTTAaatc
atggaattattatagacactggaaaaacaacgagctgaattttgccaatt
tctcatgtacaagccttgtccgcagtaatgacattattgttcaccct Run BLAST on NCBI protein sequence of TCONS_00005443-protein >TCONS_00005443-protein ID=TCONS_00005443-protein|Name=TCONS_00005443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
GKIIYNTSLSFQLFSYSKKRNTLKIELEKVNCISKTSIMGKIHNNEITIV
NQTGYQMEFFGEWFDSGRVADGNCWPHTIGNGEKATILCYERDWAWAGCS
GYVQYRLCGDRTKILTIGFSNPSVGNNKVGVGFTGKQVWDNMTSNNYRQH
QFSQSGFSAVFQCTGGETNVCRVELGSDHPSITAAISLHSSSLICIP Run BLAST on NCBI transcript from alignment at sc0000053:781890..783719+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005443 ID=TCONS_00005443|Name=TCONS_00005443|organism=Clytia hemisphaerica|type=transcript|length=1830bp|location=Sequence derived from alignment at sc0000053:781890..783719+ (Clytia hemisphaerica)
GGAAAAATCATTTATAATACTTCTCTGTCATTTCAATTATTCTCTTAttc
gaaaaaaagaaacactttGAAGATCGAGTTAGAGAAAGTCAACTGTATAT
CTAAAACATCCATCATGGGGAAAATACACAACAATGAAATAACCATTGTC
AACCAGACAGGATATCAAATGGAGTTTTTTGGGGAATGGTTTGATTCTGG
TCGTGTTGCTGATGGCAATTGTTGGCCACATACTATCGGGAACGGTGAAA
AAGCGACAATACTCTGCTATGAACGTaaaatatgttttattttatcattt
attATTTGTGCCCTTTAACAAAGTACTTTTTGTGAAGTTTATTTCTAAAC
CCTTCTCACAGGATTTTTTGGActcgatggagattgatattccAAGGGAA
TTAATTAATGCtgaggatttgaattccattgttttaagtaagaaaattca
gtgggaatgaATAAAGTCGCTTGTCGGAGGTCCGTTCAATACTCCTAGCA
CTTCCTTTGGGGTGATACTCGATCTAAATAAGTCTGATTTCATCAaccca
gtgatattcatattgtAAGTTTattggcttggatcacgagatttacgttt
gatACATCATCTATACTCTACCGTTCCTATTTCATTGTAGGTGATTGGGC
ATGGGCGGGATGCTCAGGTTACGTCCAGTACAGATTGTGCGGGGATAGGA
CAAAGATTTTAACTATTGGATTTTCAAACCCCTCTGTCGGAAACAATAAA
GTAGGGGTCGGTTTCACTGGCAAACAGGTAAGATATCCAATATCCATCTC
TAAAATTTTATGGACTTTATGGACATTTTGAACTTTGGATGGTTAGCACA
TTTGATGTTTTCTGTCGATCCTTTTtcagttcaatttttaattatcttaC
AAAAGTGAAAGCATGTGAAAGTATCTAGAAGTGTCTGTCAATAAAAACCT
CTTAGAGCAGGTGGAGAAAGATATATCATACATAGGAAAATATCACCACA
TAGATATAAATgaatataacacccctgtctcacagctccggcggaacttt
tttcctcagtggggataaaaatccaAACCCTAATAGGGGTAAAAATTATA
TcgttccaaagttaaaaaatccagtgggatggttttggaacaTTGAATTT
AGAGCATGGATGAAGCCAAAGTGAATTTCCCattggggctgaaattccag
tgtattttcctaccggggacaaaatctttgccaaattttccaatggGGCT
GTGGTCCCAGcgggtttgtgacacaggggtctAGTATATTCCTCTACTGT
CACCTTAAGAAAAACAAGGTATTTGGGCAAGTAACATTTTGTGTagattt
tgttcaaactgtTTAATATTATTCCTTCAATCTATCGTTGACAGGTGTGG
GACAATATGACGAGTAACAATTACCGCCAACATCAATTCTCTCAATCTgg
attttcagctgttttccaATGCACTGGTGGTGAAACAAACGTCTGCAGAG
TTGAATTGGGTAGTGATCACCCATCTATAACGGCTGCTATCTCATTACAT
TCTTCTTCTTTGATATGCATACCTTAAAATTTGTATGATGACGATATCAA
TTGAGTGATCAGAGCTAATCAGCaacttttgcatttttttcttgttaaGA
CTTATCAGCACCATACGCAGTACCATAGCTGGCTAAACCGAAAGACATGA
TATCCTACATATCTTACGGGCGTACGTTAaatcatggaattattatagac
actggaaaaacaacgagctgaattttgccaatttctcatgtacaagcctt
gtccgcagtaatgacattattgttcaccct Coding sequence (CDS) from alignment at sc0000053:781890..783719+ >TCONS_00005443 ID=TCONS_00005443|Name=TCONS_00005443|organism=Clytia hemisphaerica|type=CDS|length=1782bp|location=Sequence derived from alignment at sc0000053:781890..783719+ (Clytia hemisphaerica)
GGAAAAATCATTTATAATACTTCTCTGTCATTTCAATTATTCTCTTAttc
gaaaaaaagaaacactttGAAGATCGAGTTAGAGAAAGTCAACTGTATAT
CTAAAACATCCATCATGGGGAAAATACACAACAATGAAATAACCATTGTC
AACCAGACAGGATATCAAATGGAGTTTTTTGGGGAATGGTTTGATTCTGG
TCGTGTTGCTGATGGCAATTGTTGGCCACATACTATCGGGAACGGTGAAA
AAGCGACAATACTCTGCTATGAACGTGATTGGGCATGGGCGGGATGCTCA
GGTTACGTCCAGTACAGATTGTGCGGGGATAGGACAAAGATTTTAACTAT
TGGATTTTCAAACCCCTCTGTCGGAAACAATAAAGTAGGGGTCGGTTTCA
CTGGCAAACAGGTGTGGGACAATATGACGAGTAACAATTACCGCCAACAT
CAATTCTCTCAATCTggattttcagctgttttccaATGCACTGGTGGTGA
AACAAACGTCTGCAGAGTTGAATTGGGTAGTGATCACCCATCTATAACGG
CTGCTATCTCATTACATTCTTCTTCTTTGATATGCATACCTTAAGGAAAA
ATCATTTATAATACTTCTCTGTCATTTCAATTATTCTCTTAttcgaaaaa
aagaaacactttGAAGATCGAGTTAGAGAAAGTCAACTGTATATCTAAAA
CATCCATCATGGGGAAAATACACAACAATGAAATAACCATTGTCAACCAG
ACAGGATATCAAATGGAGTTTTTTGGGGAATGGTTTGATTCTGGTCGTGT
TGCTGATGGCAATTGTTGGCCACATACTATCGGGAACGGTGAAAAAGCGA
CAATACTCTGCTATGAACGTGATTGGGCATGGGCGGGATGCTCAGGTTAC
GTCCAGTACAGATTGTGCGGGGATAGGACAAAGATTTTAACTATTGGATT
TTCAAACCCCTCTGTCGGAAACAATAAAGTAGGGGTCGGTTTCACTGGCA
AACAGGTGTGGGACAATATGACGAGTAACAATTACCGCCAACATCAATTC
TCTCAATCTggattttcagctgttttccaATGCACTGGTGGTGAAACAAA
CGTCTGCAGAGTTGAATTGGGTAGTGATCACCCATCTATAACGGCTGCTA
TCTCATTACATTCTTCTTCTTTGATATGCATACCTTAAGGAAAAATCATT
TATAATACTTCTCTGTCATTTCAATTATTCTCTTAttcgaaaaaaagaaa
cactttGAAGATCGAGTTAGAGAAAGTCAACTGTATATCTAAAACATCCA
TCATGGGGAAAATACACAACAATGAAATAACCATTGTCAACCAGACAGGA
TATCAAATGGAGTTTTTTGGGGAATGGTTTGATTCTGGTCGTGTTGCTGA
TGGCAATTGTTGGCCACATACTATCGGGAACGGTGAAAAAGCGACAATAC
TCTGCTATGAACGTGATTGGGCATGGGCGGGATGCTCAGGTTACGTCCAG
TACAGATTGTGCGGGGATAGGACAAAGATTTTAACTATTGGATTTTCAAA
CCCCTCTGTCGGAAACAATAAAGTAGGGGTCGGTTTCACTGGCAAACAGG
TGTGGGACAATATGACGAGTAACAATTACCGCCAACATCAATTCTCTCAA
TCTggattttcagctgttttccaATGCACTGGTGGTGAAACAAACGTCTG
CAGAGTTGAATTGGGTAGTGATCACCCATCTATAACGGCTGCTATCTCAT
TACATTCTTCTTCTTTGATATGCATACCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005443-exon-sc0000053-1491911889:781890..782163 | TCONS_00005443-exon-sc0000053-1491911889:781890..782163 | Clytia hemisphaerica | exon |
| TCONS_00005443-exon-sc0000053-1510915933:781890..782163 | TCONS_00005443-exon-sc0000053-1510915933:781890..782163 | Clytia hemisphaerica | exon |
| TCONS_00005443-exon-sc0000053-1575043694:781890..782163 | TCONS_00005443-exon-sc0000053-1575043694:781890..782163 | Clytia hemisphaerica | exon |
| TCONS_00005443-exon-sc0000053-1491911889:782530..782666 | TCONS_00005443-exon-sc0000053-1491911889:782530..782666 | Clytia hemisphaerica | exon |
| TCONS_00005443-exon-sc0000053-1510915933:782530..782666 | TCONS_00005443-exon-sc0000053-1510915933:782530..782666 | Clytia hemisphaerica | exon |
| TCONS_00005443-exon-sc0000053-1575043694:782530..782666 | TCONS_00005443-exon-sc0000053-1575043694:782530..782666 | Clytia hemisphaerica | exon |
| TCONS_00005443-exon-sc0000053-1491911889:783284..783719 | TCONS_00005443-exon-sc0000053-1491911889:783284..783719 | Clytia hemisphaerica | exon |
| TCONS_00005443-exon-sc0000053-1510915933:783284..783719 | TCONS_00005443-exon-sc0000053-1510915933:783284..783719 | Clytia hemisphaerica | exon |
| TCONS_00005443-exon-sc0000053-1575043694:783284..783719 | TCONS_00005443-exon-sc0000053-1575043694:783284..783719 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:781890..783719 + |
Blast
The following BLAST results are available for this feature:
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