TCONS_00005424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005424
Unique NameTCONS_00005424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005424 ID=TCONS_00005424|Name=TCONS_00005424|organism=Clytia hemisphaerica|type=transcript|length=1379bp
CatgaattatcaaaacaaatgtgaCGTCACACATATAAACACACGAGGGA
GTCACAAGACGTACATAGAGGAAAGCTTCAACATGGATTGTCAAGTATGC
tgtagaacatgagaaatcacgTCATGTATATCAGAAACAGGGAGAAGAAG
GCTTTAGCACACAAGCAAAATGAAGGTGATGCTTGCAATCGCATTCCTCT
TATCACTTATGAAGACCATTCATACATGTGGTACAAGCACTCATATCAGT
ATTGCACACGAGGCTGCAACATTCTATCAAGGTCCACTGGATGCTAAAGT
AGACTATGCTTCGCTTATTCAAAAACATCAAGACGCCTTTGTGGCGGGAA
ATCCATACCCTGATGCGATGTATCCGTCTGTCTGTTTTGGTGGCAAATAT
CATGAAGTAGCGGAGGATACACATTGGGCACCCTTCCTGAATGCAACTGT
CAATTATATTCGAAGGAAATATCCACAACCGTGGGACGAGGCCACAGAAA
AGTTGGTCGCATTCACTTTCGGTTACATTTCGCATCAAGTTGCGGATATT
TCGTGGCACAGTTTGGCTGGTTTCAAACAAGGGTTTATACAAGCTATGGC
CAACGTCAATTTTCATGGTGTTTTTGATAAAGCACATACCGATGCGGATA
TAGGAGGGGATATGTTGACACAATTTGATAATTCAGACGATCCTATTGGC
TCCAATACATGGTATGTTCCAGTTGACGATTTATACGAAATCTATAAAGA
ATTTTATGGTGGTAATCAAACTATTCCCAAAACTGTCATCGAACTGTGCA
GTGAACTCCTTTATATTGAATACATAGCGGAGAAATTTGCTGGTGCAAAA
ATCTTCAAGCCGTTTGTCAAGAAGTCACCTTTCCTTTTGAATCAACTGGA
TAATTATTTTCTGGGTGGGATCCATGACATGGCTGCCTGGACTTCCAAAA
TATGGAATGAAACTGTTTTCATGCTTGAACATGGAACTTCTGCTTGCAAT
ATGGAACGATCAACTATGCATGTTAACTGTACCGGCTATTTACCAGCTCA
TAATGGGCAATCGGTCATGGCCAGAAAGAACCCGGGTAGAGGATACCCTC
ATAAAAATGGTGGTTGGAGTTACAATGATGTGCATAAGACAAAGAGCTTG
AGAGGCGTTTATTTTACGCCCGGTGACAAAATGGCGGAATATATAACGGG
CGCGACGGAGAAACGAAAGAAGGTTTTGGGACAGACGGAAACAAGTGAAC
ACAGTTATTCCCAAATCGGAAAGTCTATGGAAGAGATCAAAACACCAGAC
GACACATATTATCTCGTCATCAGTGCCCCTACATACAGCGATCTTGGTCG
TCCTTCCATCGGTAAAGTTTGGTTTATAA
Run BLAST on NCBI

protein sequence of TCONS_00005424-protein

>TCONS_00005424-protein ID=TCONS_00005424-protein|Name=TCONS_00005424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MKVMLAIAFLLSLMKTIHTCGTSTHISIAHEAATFYQGPLDAKVDYASLI
QKHQDAFVAGNPYPDAMYPSVCFGGKYHEVAEDTHWAPFLNATVNYIRRK
YPQPWDEATEKLVAFTFGYISHQVADISWHSLAGFKQGFIQAMANVNFHG
VFDKAHTDADIGGDMLTQFDNSDDPIGSNTWYVPVDDLYEIYKEFYGGNQ
TIPKTVIELCSELLYIEYIAEKFAGAKIFKPFVKKSPFLLNQLDNYFLGG
IHDMAAWTSKIWNETVFMLEHGTSACNMERSTMHVNCTGYLPAHNGQSVM
ARKNPGRGYPHKNGGWSYNDVHKTKSLRGVYFTPGDKMAEYITGATEKRK
KVLGQTETSEHSYSQIGKSMEEIKTPDDTYYLVISAPTYSDLGRPSIGKV
WFI
Run BLAST on NCBI

transcript from alignment at sc0000053:443173..450090+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005424 ID=TCONS_00005424|Name=TCONS_00005424|organism=Clytia hemisphaerica|type=transcript|length=6918bp|location=Sequence derived from alignment at sc0000053:443173..450090+ (Clytia hemisphaerica)
CatgaattatcaaaacaaatgtgaCGTCACACATATAAACACACGAGGGA
GTCACAAGACGTACATAGAGGAAAGCTTCAACATGGATTGTCAAGTATGC
tgtagaacatgagaaatcacgTCATGTACGTTTTATTATGAACTGCTGTT
GCAGAAATGACATGCAActtatttttgttttagctCTCATCAAATTTCAG
TGTGTGctggattttttactttttgtatgttttgtaTAGCGATCTTTATC
CATATGGTTTTGTGTACTAGTTTTTTATCATGGCTTTCTTACTTTTCTAG
GTATATCAGAAACAGGGAGAAGAAGGCTTTAGCACACAAGCAAAATGAAG
GTAATTTTCTTCTTAGCTGAGCAAGTTAAGGCTCCTTATATCAAATCATG
CTGTAATGATCTTGAAGATTGATGTAGAGGGTTTTTTCGAAAGCGCACAA
ACAGATCAACTTAGAGTCTCTGCAGCACATTCTATCGAAGGAAATGTATC
GTCTAAAAGTTCTGTATTAACCTTTGCACAGtcaattttcttcatttaaa
aTGTGCTGCAAAGACTTTAGGTTAGTCTGTTTGTGGTTTTGAAAACTACA
GTCAGCTTGGACCTCTACTATTCAAATCATTTGGCAATATGAACCAAAAC
ATTATAGTCCCCTCAGCCACAAAGTATCGTCTAAAGTACTCTCCATAATT
CTCTAGTGTATAAGAAATTCGCAAATCCGCATCTCTTCATGATCGAGTCA
AAAAGACTAATTAAAATCGCTGTTTATCGTCAGGTGATGCTTGCAATCGC
ATTCCTCTTATCACTTATGAAGACCATTCATACATGTGGTACAAGCACTC
ATATCAGTATTGCACACGAGGCTGCAACATTCTATCAAGGTCCACTGGAT
GCTAAAGTAGACTATGCTTCGCTTATTCAAAAACATCAAGACGCCTTTGT
GGCGGGAAATCCATACCCTGATGCGATGTATCCGTCTGTCTGTTTTGGTG
GCAAATATCATGAAGTAGCGGAGGATACACATTGGGCACCCTTCCTGAAT
GCAACTGTCAATTATATTCGAAGGAAATATCCACAACCGTGGGACGAGGT
ATAAGAATATTAAATGAAACTGACCAGAAAACAAGAAGacacgtcttttt
ataagaacatccaatattCTTGAATCCAtctgatgttcttaaatttttgt
gttttaggcctaaaaatatgtttaaaatgttcttaaatttgaccattttg
tgagtaattttATGCAATTAGCTAAGAAAATGGATGTTTTAGAATCCATA
AGCCtcgaaatgttcttaaattgttttcaatatttaggcaaaataagcct
ttatgtttttatataagtTTGTTTCTATAGAAAATACGAAATGTAATATT
CTTTGAAAgtgcaattcatgatattcatgacgtaatgttttctacggaaa
taccccggttttagccagtagtggcaaatttaaactagacttGTATAAAA
CTTGCCATTAATGGCAAAAACCGGGttttttccgtagaaaacattacgtc
atgtctctcatgaatatcatgaattccttTCGTTTTAGGCCACAGAAAAG
TTGGTCGCATTCACTTTCGGTTACATTTCGCATCAAGTTGCGGATATTTC
GTGGCACAGTTTGGCTGGTTTCAAACAAGGGTTTATACAAGCTATGGCCA
ACGTCAATTTTCATGGTGTTTTTGATAAAGCACATACCGATGCGGATATA
GGAGGGGATATGTTGACACAATTTGATAATTCAGACGATCCTATTGGCTC
CAATACATGGTAAGATATAATTTTCAAAGGTTGACTTTTCTGCTATAAGG
TTTGCTTGGAACCGCTAAGGCTTTTAATCGGGATTTAATCTTTTCTTAAT
CGCGATTAAGTCCGTGAGTTTCGAACAACTGTTAATTGGCGCTAATCGTA
ATTTAATCCAGACTTGAGCTAATTCTGCGTGGAAGGGTGGTAGGTCAGCT
CTATCACTTTAAGGCTAGGTCTTCAAATTGAAGATAGAAATAGCGAACTT
GACAACGGATAGCATTGCCTTTTCGGCTTTCGCCAGCGGAGACCTTTTAG
CAAAATAAGTATGTTTACCACAGCCATTCTGGGGATGTGATTAGCTCCAA
TACAATAGAACCAAGTTTATTTTAAGAAccaagtttataagaacataaaa
aaaacaaggcCAGCTTCAGCTCAGAAGAAATTTACAGCAAGATTTTCAAT
TAAGAACGTGTTTGAGAACATGTTAGGCTGGAAATTACCAAGAAAATAAG
CACATCTAGCCTTAGCCAaaatttaggtgttctaataaaaaaacgtgtac
atgttGAGTGTTTATTCTACTAGTACAGTATTCTGACGATTTCTTTTTAG
ATTTCCCATTCTCACGATCTTTCACTGTCTTCAGAAATGTACTCCTCCCT
TGACATTACTCAAACGTTGACTTCACTTTATCAGAAAGAGAGCTCAAAGT
GATAACCTTTTTAggagatgagctggagtttttgcAAGATGCTTAACAAT
AGGGaagacgcgttctttagaaaaagtaataaaatcgtttgtaTCAACAT
TTAACGTCATTCAACGAGTCAtgaaagaacttgtaaaaactccggCTTGT
CCCGTTTTTAGCCGTACTCGTCACACATTTATCAGACATTACTTAACCAG
TACTTTAAACATATGAATGAAACtagtcaaattttatttttatttttgat
attatttcaaatattatttcaatgaaaattagtGTTGTTTGTTGGCATGA
TGTTTATTGCCGTCGACGTTGGAATTGACGGCGTGAGAAAAAGCCGGCGA
CGGCTGATCTCAAACGACGTGCTGAAATGCCTTGAAACAAAGCGACGAAG
GATGCCAACTTGCTGTGAGATGATTTAGTTGTTAGTTCGAAAATCAACTT
GTTTTTCTCGTAGACAATCTCGTTGGCATCTTGAAGGTTTTCTTTCAACT
TTGCGATCTCTTCATTTCGTGCTCGTAGCATTTCTTCTGCCTGTTTCTTC
TccaacaaaaaaaacatctcttGGTGGACCAACTTTTTACCCAATGTCAC
TTTCTGCACATCAAGTTGCCATTGCATATCAGAAATTTTCCAGTCTTTGT
AAGCAATCTCGTCATTCAGCTGTGTGATGCGAGCTGAAAAGTTACGAGGT
GGTTTGACAGGTGCAGTTTGTGTTGATTTTGCGGCAGTATTGGTCACATC
TGGAATTCGGTGTTTGTGTTTTTCGTCAAGCAATTTCAAGACATCATCAG
TCAACCAAGTCATGAAGTTCTCTCCTTGGCTTGGTTTACATTCTTCTGTC
TTCAATTGATGACTTTCTTTCGATTGATTTTGTTGGTCGATAAACTTCAA
TACATCTCGTGTCAGAAACGAGACAAATTTCTCTTCTTCACTGAATTCAA
TATTCTTGATCATTCTTTGACCAGGATTNGCAACTTCAATACATCTCGTG
TGAGAAACGAGACGAATTTCTCTTCTTCACTGAAATCATTATTCTTGATC
ATTCTTTGACCAGGATTCCAAAAAACGAGGACACAATcctcaatttcaaa
acaagaaaacgtTTCTTCTTGTTTACAcattgttttcttgttaaattttc
acttttaactTGATATCGATACACTTGAATACTCAAAATACGCACTAGAT
TTGTCGAAAATACGAGCGAACTCTCTTTTCAACAATACTTAATCTAGAAC
TGAATTTCTAAAATCTAAACTctgtttcattaaattttctttttatttga
cgtcaaatattatACATGCAGTAAGAactgacgtcactttttctccAATC
TGCTGCATTGATATAGTGCTCATGAGCCTCGACTTCTTAAGGCTATATCT
GCCCTATTggatcatttttaagattttagttCCCGAGATCCTAAGCATCA
AAGTCTTGAATTTAATGTTAAGACCCTGAGTGAAGCCTCAATCTAAATTC
CAGAAGCACCTATAAACATTTATGGTTATGAAGTTTTGACAGGGAATTTC
CTATTCATGACGTAacgttttctacggaaataccccggttttagccagtg
gtggaaaatttaaactagacaaaagttgtataaaatttcccactactggc
aaaaaccaggGTAGAAGACATCACGTCATGAAGATCATGAATGGAATATT
ATGACTCTGGTTATAGGTATGTTCCAGTTGACGATTTATACGAAATCTAT
AAAGAATTTTATGGTGGTAATCAAACTATTCCCAAAACTGTCATCGAACT
GTGCAGTGAACTCCTTTATATTGAATACATAGCGGAGAAATTTGCTGGTG
CAAAAATCTTCAAGCCGTTTGTCAAGAAGTCACCTTTCCTTTTGAATCAA
CTGGATAATTATTTTCTGGGTAAGTTTTCTTCCCCtaataattttttgag
aaatgttattttttttaaattttctgataGATTACTGATTTTTCATTCTA
TACCTccaaatgaaattttgagtGCATTTACCGGCCATTTCGaacttaga
aattttcaaaaattcacctTCAAACCTAACCTGTTTGCCCTTGCGGTGTC
ACAAAACCTTAGGCTTTCCATtatcaaaatgcttcctacggaaATGTTTG
TTAGTTAGACCATGGCCAGACTATTTATGGCAATCATGCAATTCTTAACG
TACTATGcttcagtgccgtagcaactggggggcaagggggggctatgccc
cccaataattttttcaaaaatggttattttgcaaaatgcaaagtttttct
tttttaatttgTCATAATTGTCTTTTATGTGCATGTTTTGAGTGTATTTT
TAggcaatctagagctcaattttcaaaattccccccctcgggcaaaccat
ggttggccctcgcggtgtcactaaacttcagcccccccaatatggaaatg
cttcctacggcactgtactTCGTAACCGTAATCTTTCAGAGAAAAACGCT
TATCAGGCGATACCAACTTGATTAGTTTTAcaggcccgaccgaccctgaa
agtccaaaaaatcgaaataaaaataaaattaattttggtagTAAAGTTTT
TACAGACtcccaaattttaaaaatcttttttagtttttccagggttttga
gaattttatgttaaatttttcattttatacaCGAATTCGagctttttttg
tctttttattttttatttcgcatttttgtcatGATGTATTAGTTTTTGCC
TTCATTTTAGGAGATTTTAaatgaaattctacttttatttttattttttt
cgccgaccgaccgaccgacccttttcttgggtagcttggcccgtaaaaca
acaaattgaatTGGCCTCGCCTAAGTTGGTActctaaaaaaagcaaaaat
aatggAAGGGACAAATTGTAGCACAAATTGATATTACTCCGTCACAGTTA
TCgcattatcatataacacccatatAACTGTATTATACGGATTATAAACG
AATCTAGTCTAAAAAGATGGTAATTTTACTACTAGAACATTCGCTTCCAG
AAAAATCAGACTATTCGTGAAATACACGTATTTTGATGTTAAGTTAATAA
TCATTAATAAACAAGATTTTCCAAACCAAATGCACTGATAAAGTAAGCCA
TGTGTTTATGTTCTAGAAGAGAATGTGAATCACATTTCAAAATCCTCTAG
TTATGCTAGTAGAGTATAAACGATGTTATCGTTCgtgttacagtgatagt
aaaggcgggaaagtatggcggtatggcgttatggcgatATTCGgagaaaa
aatcggcgggaaaGTTTCGAAGACTGGCTAACTCtcccgactgtaaactc
ttttcggcaaaaaacccggttgcgaattttcttcggcgtTGGGCTTATTC
CTTTTTCCTTAGATAGTGATTGGTCttactataacatagtctaacTAAAG
TAGTGAATCATTTCTATTTTCTCCAACAGGTGGGATCCATGACATGGCTG
CCTGGACTTCCAAAATATGGAATGAAACTGTTTTCATGCTTGAACATGGA
ACTTCTGCTTGCAATATGGAACGATCAACTATGCATGTTAACTGTACCGG
CTATTTACCAGCTCATAATGGGCAATCGGTCATGGCCAGAAAGAACCCGG
GTAGAGGATACCCTCATAAAAATGGTGGTTGGAGTTACAATGATGTGCAT
AAGACAAAGAGCTTGAGAGGCGTTTATTTTACGCCCGGTGACAAAATGGC
GGAATATATAACGGGCGCGACGGAGAAACGAAAGAAGGTTTTGGGACAGA
CGGAAACAAGTGAACACAGTTATTCCCAAATCGGAAAGTAAGATCaagtt
tgattttcattttagcaTACGCAACCCCCTCTCTTAGCTCTCTAGCCTCT
CTAGTAATAGTCATGCGTTCAAATGCTTGAAAGCTAATAAACCAGAATCA
AGCCGTTAAAATATGTTCCAATAAATGATTGATTTATAAGTTTGAAAcag
tgaaaattttcaataaaattagaGCGACGCTTATCGAAAATCTGTGACCC
TGTAGGAGGATATTTAATGCGTAAAGCGTTAGCCTGCTGATTATGAATAT
ATGCCACTGGAAGTAGGTTAcctttttggaaaaaactttgcattttagTG
TGAAAAAAGCGGTATAGCCCATCGATTGATAAGGGTAGTACGAGAATAAG
AgtagaaagaaatgaaaaactgGTTTTAATTATGAGCTTTACAAGTACCT
CAGCAACATCAACATCATtatctcattttttttttctaaattttttgaat
tttcgtaACAGGTCTATGGAAGAGATCAAAACACCAGACGACACATATTA
TCTCGTCATCAGTGCCCCTACATACAGCGATCTTGGTCGTCCTTCCATCG
GTAAAGTTTGGTTTATAA

Coding sequence (CDS) from alignment at sc0000053:443173..450090+

>TCONS_00005424 ID=TCONS_00005424|Name=TCONS_00005424|organism=Clytia hemisphaerica|type=CDS|length=7254bp|location=Sequence derived from alignment at sc0000053:443173..450090+ (Clytia hemisphaerica)
ATGAAGGTGATGCTTGCAATCGCATTCCTCTTATCACTTATGAAGACCAT
TCATACATGTGGTACAAGCACTCATATCAGTATTGCACACGAGGCTGCAA
CATTCTATCAAGGTCCACTGGATGCTAAAGTAGACTATGCTTCGCTTATT
CAAAAACATCAAGACGCCTTTGTGGCGGGAAATCCATACCCTGATGCGAT
GTATCCGTCTGTCTGTTTTGGTGGCAAATATCATGAAGTAGCGGAGGATA
CACATTGGGCACCCTTCCTGAATGCAACTGTCAATTATATTCGAAGGAAA
TATCCACAACCGTGGGACGAGGCCACAGAAAAGTTGGTCGCATTCACTTT
CGGTTACATTTCGCATCAAGTTGCGGATATTTCGTGGCACAGTTTGGCTG
GTTTCAAACAAGGGTTTATACAAGCTATGGCCAACGTCAATTTTCATGGT
GTTTTTGATAAAGCACATACCGATGCGGATATAGGAGGGGATATGTTGAC
ACAATTTGATAATTCAGACGATCCTATTGGCTCCAATACATGGTATGTTC
CAGTTGACGATTTATACGAAATCTATAAAGAATTTTATGGTGGTAATCAA
ACTATTCCCAAAACTGTCATCGAACTGTGCAGTGAACTCCTTTATATTGA
ATACATAGCGGAGAAATTTGCTGGTGCAAAAATCTTCAAGCCGTTTGTCA
AGAAGTCACCTTTCCTTTTGAATCAACTGGATAATTATTTTCTGGGTGGG
ATCCATGACATGGCTGCCTGGACTTCCAAAATATGGAATGAAACTGTTTT
CATGCTTGAACATGGAACTTCTGCTTGCAATATGGAACGATCAACTATGC
ATGTTAACTGTACCGGCTATTTACCAGCTCATAATGGGCAATCGGTCATG
GCCAGAAAGAACCCGGGTAGAGGATACCCTCATAAAAATGGTGGTTGGAG
TTACAATGATGTGCATAAGACAAAGAGCTTGAGAGGCGTTTATTTTACGC
CCGGTGACAAAATGGCGGAATATATAACGGGCGCGACGGAGAAACGAAAG
AAGGTTTTGGGACAGACGGAAACAAGTGAACACAGTTATTCCCAAATCGG
AAAGTCTATGGAAGAGATCAAAACACCAGACGACACATATTATCTCGTCA
TCAGTGCCCCTACATACAGCGATCTTGGTCGTCCTTCCATCGGTAAAGTT
TGGTTTATAATGAAGGTGATGCTTGCAATCGCATTCCTCTTATCACTTAT
GAAGACCATTCATACATGTGGTACAAGCACTCATATCAGTATTGCACACG
AGGCTGCAACATTCTATCAAGGTCCACTGGATGCTAAAGTAGACTATGCT
TCGCTTATTCAAAAACATCAAGACGCCTTTGTGGCGGGAAATCCATACCC
TGATGCGATGTATCCGTCTGTCTGTTTTGGTGGCAAATATCATGAAGTAG
CGGAGGATACACATTGGGCACCCTTCCTGAATGCAACTGTCAATTATATT
CGAAGGAAATATCCACAACCGTGGGACGAGGCCACAGAAAAGTTGGTCGC
ATTCACTTTCGGTTACATTTCGCATCAAGTTGCGGATATTTCGTGGCACA
GTTTGGCTGGTTTCAAACAAGGGTTTATACAAGCTATGGCCAACGTCAAT
TTTCATGGTGTTTTTGATAAAGCACATACCGATGCGGATATAGGAGGGGA
TATGTTGACACAATTTGATAATTCAGACGATCCTATTGGCTCCAATACAT
GGTATGTTCCAGTTGACGATTTATACGAAATCTATAAAGAATTTTATGGT
GGTAATCAAACTATTCCCAAAACTGTCATCGAACTGTGCAGTGAACTCCT
TTATATTGAATACATAGCGGAGAAATTTGCTGGTGCAAAAATCTTCAAGC
CGTTTGTCAAGAAGTCACCTTTCCTTTTGAATCAACTGGATAATTATTTT
CTGGGTGGGATCCATGACATGGCTGCCTGGACTTCCAAAATATGGAATGA
AACTGTTTTCATGCTTGAACATGGAACTTCTGCTTGCAATATGGAACGAT
CAACTATGCATGTTAACTGTACCGGCTATTTACCAGCTCATAATGGGCAA
TCGGTCATGGCCAGAAAGAACCCGGGTAGAGGATACCCTCATAAAAATGG
TGGTTGGAGTTACAATGATGTGCATAAGACAAAGAGCTTGAGAGGCGTTT
ATTTTACGCCCGGTGACAAAATGGCGGAATATATAACGGGCGCGACGGAG
AAACGAAAGAAGGTTTTGGGACAGACGGAAACAAGTGAACACAGTTATTC
CCAAATCGGAAAGTCTATGGAAGAGATCAAAACACCAGACGACACATATT
ATCTCGTCATCAGTGCCCCTACATACAGCGATCTTGGTCGTCCTTCCATC
GGTAAAGTTTGGTTTATAATGAAGGTGATGCTTGCAATCGCATTCCTCTT
ATCACTTATGAAGACCATTCATACATGTGGTACAAGCACTCATATCAGTA
TTGCACACGAGGCTGCAACATTCTATCAAGGTCCACTGGATGCTAAAGTA
GACTATGCTTCGCTTATTCAAAAACATCAAGACGCCTTTGTGGCGGGAAA
TCCATACCCTGATGCGATGTATCCGTCTGTCTGTTTTGGTGGCAAATATC
ATGAAGTAGCGGAGGATACACATTGGGCACCCTTCCTGAATGCAACTGTC
AATTATATTCGAAGGAAATATCCACAACCGTGGGACGAGGCCACAGAAAA
GTTGGTCGCATTCACTTTCGGTTACATTTCGCATCAAGTTGCGGATATTT
CGTGGCACAGTTTGGCTGGTTTCAAACAAGGGTTTATACAAGCTATGGCC
AACGTCAATTTTCATGGTGTTTTTGATAAAGCACATACCGATGCGGATAT
AGGAGGGGATATGTTGACACAATTTGATAATTCAGACGATCCTATTGGCT
CCAATACATGGTATGTTCCAGTTGACGATTTATACGAAATCTATAAAGAA
TTTTATGGTGGTAATCAAACTATTCCCAAAACTGTCATCGAACTGTGCAG
TGAACTCCTTTATATTGAATACATAGCGGAGAAATTTGCTGGTGCAAAAA
TCTTCAAGCCGTTTGTCAAGAAGTCACCTTTCCTTTTGAATCAACTGGAT
AATTATTTTCTGGGTGGGATCCATGACATGGCTGCCTGGACTTCCAAAAT
ATGGAATGAAACTGTTTTCATGCTTGAACATGGAACTTCTGCTTGCAATA
TGGAACGATCAACTATGCATGTTAACTGTACCGGCTATTTACCAGCTCAT
AATGGGCAATCGGTCATGGCCAGAAAGAACCCGGGTAGAGGATACCCTCA
TAAAAATGGTGGTTGGAGTTACAATGATGTGCATAAGACAAAGAGCTTGA
GAGGCGTTTATTTTACGCCCGGTGACAAAATGGCGGAATATATAACGGGC
GCGACGGAGAAACGAAAGAAGGTTTTGGGACAGACGGAAACAAGTGAACA
CAGTTATTCCCAAATCGGAAAGTCTATGGAAGAGATCAAAACACCAGACG
ACACATATTATCTCGTCATCAGTGCCCCTACATACAGCGATCTTGGTCGT
CCTTCCATCGGTAAAGTTTGGTTTATAATGAAGGTGATGCTTGCAATCGC
ATTCCTCTTATCACTTATGAAGACCATTCATACATGTGGTACAAGCACTC
ATATCAGTATTGCACACGAGGCTGCAACATTCTATCAAGGTCCACTGGAT
GCTAAAGTAGACTATGCTTCGCTTATTCAAAAACATCAAGACGCCTTTGT
GGCGGGAAATCCATACCCTGATGCGATGTATCCGTCTGTCTGTTTTGGTG
GCAAATATCATGAAGTAGCGGAGGATACACATTGGGCACCCTTCCTGAAT
GCAACTGTCAATTATATTCGAAGGAAATATCCACAACCGTGGGACGAGGC
CACAGAAAAGTTGGTCGCATTCACTTTCGGTTACATTTCGCATCAAGTTG
CGGATATTTCGTGGCACAGTTTGGCTGGTTTCAAACAAGGGTTTATACAA
GCTATGGCCAACGTCAATTTTCATGGTGTTTTTGATAAAGCACATACCGA
TGCGGATATAGGAGGGGATATGTTGACACAATTTGATAATTCAGACGATC
CTATTGGCTCCAATACATGGTATGTTCCAGTTGACGATTTATACGAAATC
TATAAAGAATTTTATGGTGGTAATCAAACTATTCCCAAAACTGTCATCGA
ACTGTGCAGTGAACTCCTTTATATTGAATACATAGCGGAGAAATTTGCTG
GTGCAAAAATCTTCAAGCCGTTTGTCAAGAAGTCACCTTTCCTTTTGAAT
CAACTGGATAATTATTTTCTGGGTGGGATCCATGACATGGCTGCCTGGAC
TTCCAAAATATGGAATGAAACTGTTTTCATGCTTGAACATGGAACTTCTG
CTTGCAATATGGAACGATCAACTATGCATGTTAACTGTACCGGCTATTTA
CCAGCTCATAATGGGCAATCGGTCATGGCCAGAAAGAACCCGGGTAGAGG
ATACCCTCATAAAAATGGTGGTTGGAGTTACAATGATGTGCATAAGACAA
AGAGCTTGAGAGGCGTTTATTTTACGCCCGGTGACAAAATGGCGGAATAT
ATAACGGGCGCGACGGAGAAACGAAAGAAGGTTTTGGGACAGACGGAAAC
AAGTGAACACAGTTATTCCCAAATCGGAAAGTCTATGGAAGAGATCAAAA
CACCAGACGACACATATTATCTCGTCATCAGTGCCCCTACATACAGCGAT
CTTGGTCGTCCTTCCATCGGTAAAGTTTGGTTTATAATGAAGGTGATGCT
TGCAATCGCATTCCTCTTATCACTTATGAAGACCATTCATACATGTGGTA
CAAGCACTCATATCAGTATTGCACACGAGGCTGCAACATTCTATCAAGGT
CCACTGGATGCTAAAGTAGACTATGCTTCGCTTATTCAAAAACATCAAGA
CGCCTTTGTGGCGGGAAATCCATACCCTGATGCGATGTATCCGTCTGTCT
GTTTTGGTGGCAAATATCATGAAGTAGCGGAGGATACACATTGGGCACCC
TTCCTGAATGCAACTGTCAATTATATTCGAAGGAAATATCCACAACCGTG
GGACGAGGCCACAGAAAAGTTGGTCGCATTCACTTTCGGTTACATTTCGC
ATCAAGTTGCGGATATTTCGTGGCACAGTTTGGCTGGTTTCAAACAAGGG
TTTATACAAGCTATGGCCAACGTCAATTTTCATGGTGTTTTTGATAAAGC
ACATACCGATGCGGATATAGGAGGGGATATGTTGACACAATTTGATAATT
CAGACGATCCTATTGGCTCCAATACATGGTATGTTCCAGTTGACGATTTA
TACGAAATCTATAAAGAATTTTATGGTGGTAATCAAACTATTCCCAAAAC
TGTCATCGAACTGTGCAGTGAACTCCTTTATATTGAATACATAGCGGAGA
AATTTGCTGGTGCAAAAATCTTCAAGCCGTTTGTCAAGAAGTCACCTTTC
CTTTTGAATCAACTGGATAATTATTTTCTGGGTGGGATCCATGACATGGC
TGCCTGGACTTCCAAAATATGGAATGAAACTGTTTTCATGCTTGAACATG
GAACTTCTGCTTGCAATATGGAACGATCAACTATGCATGTTAACTGTACC
GGCTATTTACCAGCTCATAATGGGCAATCGGTCATGGCCAGAAAGAACCC
GGGTAGAGGATACCCTCATAAAAATGGTGGTTGGAGTTACAATGATGTGC
ATAAGACAAAGAGCTTGAGAGGCGTTTATTTTACGCCCGGTGACAAAATG
GCGGAATATATAACGGGCGCGACGGAGAAACGAAAGAAGGTTTTGGGACA
GACGGAAACAAGTGAACACAGTTATTCCCAAATCGGAAAGTCTATGGAAG
AGATCAAAACACCAGACGACACATATTATCTCGTCATCAGTGCCCCTACA
TACAGCGATCTTGGTCGTCCTTCCATCGGTAAAGTTTGGTTTATAATGAA
GGTGATGCTTGCAATCGCATTCCTCTTATCACTTATGAAGACCATTCATA
CATGTGGTACAAGCACTCATATCAGTATTGCACACGAGGCTGCAACATTC
TATCAAGGTCCACTGGATGCTAAAGTAGACTATGCTTCGCTTATTCAAAA
ACATCAAGACGCCTTTGTGGCGGGAAATCCATACCCTGATGCGATGTATC
CGTCTGTCTGTTTTGGTGGCAAATATCATGAAGTAGCGGAGGATACACAT
TGGGCACCCTTCCTGAATGCAACTGTCAATTATATTCGAAGGAAATATCC
ACAACCGTGGGACGAGGCCACAGAAAAGTTGGTCGCATTCACTTTCGGTT
ACATTTCGCATCAAGTTGCGGATATTTCGTGGCACAGTTTGGCTGGTTTC
AAACAAGGGTTTATACAAGCTATGGCCAACGTCAATTTTCATGGTGTTTT
TGATAAAGCACATACCGATGCGGATATAGGAGGGGATATGTTGACACAAT
TTGATAATTCAGACGATCCTATTGGCTCCAATACATGGTATGTTCCAGTT
GACGATTTATACGAAATCTATAAAGAATTTTATGGTGGTAATCAAACTAT
TCCCAAAACTGTCATCGAACTGTGCAGTGAACTCCTTTATATTGAATACA
TAGCGGAGAAATTTGCTGGTGCAAAAATCTTCAAGCCGTTTGTCAAGAAG
TCACCTTTCCTTTTGAATCAACTGGATAATTATTTTCTGGGTGGGATCCA
TGACATGGCTGCCTGGACTTCCAAAATATGGAATGAAACTGTTTTCATGC
TTGAACATGGAACTTCTGCTTGCAATATGGAACGATCAACTATGCATGTT
AACTGTACCGGCTATTTACCAGCTCATAATGGGCAATCGGTCATGGCCAG
AAAGAACCCGGGTAGAGGATACCCTCATAAAAATGGTGGTTGGAGTTACA
ATGATGTGCATAAGACAAAGAGCTTGAGAGGCGTTTATTTTACGCCCGGT
GACAAAATGGCGGAATATATAACGGGCGCGACGGAGAAACGAAAGAAGGT
TTTGGGACAGACGGAAACAAGTGAACACAGTTATTCCCAAATCGGAAAGT
CTATGGAAGAGATCAAAACACCAGACGACACATATTATCTCGTCATCAGT
GCCCCTACATACAGCGATCTTGGTCGTCCTTCCATCGGTAAAGTTTGGTT
TATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003090XLOC_003090Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005424-proteinTCONS_00005424-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005424-exon-sc0000053-1491911889:443173..443297TCONS_00005424-exon-sc0000053-1491911889:443173..443297Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1510915933:443173..443297TCONS_00005424-exon-sc0000053-1510915933:443173..443297Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1575043694:443173..443297TCONS_00005424-exon-sc0000053-1575043694:443173..443297Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1491911889:443473..443522TCONS_00005424-exon-sc0000053-1491911889:443473..443522Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1510915933:443473..443522TCONS_00005424-exon-sc0000053-1510915933:443473..443522Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1575043694:443473..443522TCONS_00005424-exon-sc0000053-1575043694:443473..443522Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1491911889:443956..444270TCONS_00005424-exon-sc0000053-1491911889:443956..444270Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1510915933:443956..444270TCONS_00005424-exon-sc0000053-1510915933:443956..444270Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1575043694:443956..444270TCONS_00005424-exon-sc0000053-1575043694:443956..444270Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1491911889:444761..444981TCONS_00005424-exon-sc0000053-1491911889:444761..444981Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1510915933:444761..444981TCONS_00005424-exon-sc0000053-1510915933:444761..444981Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1575043694:444761..444981TCONS_00005424-exon-sc0000053-1575043694:444761..444981Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1491911889:447389..447591TCONS_00005424-exon-sc0000053-1491911889:447389..447591Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1510915933:447389..447591TCONS_00005424-exon-sc0000053-1510915933:447389..447591Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1575043694:447389..447591TCONS_00005424-exon-sc0000053-1575043694:447389..447591Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1491911889:449152..449509TCONS_00005424-exon-sc0000053-1491911889:449152..449509Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1510915933:449152..449509TCONS_00005424-exon-sc0000053-1510915933:449152..449509Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1575043694:449152..449509TCONS_00005424-exon-sc0000053-1575043694:449152..449509Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1491911889:449984..450090TCONS_00005424-exon-sc0000053-1491911889:449984..450090Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1510915933:449984..450090TCONS_00005424-exon-sc0000053-1510915933:449984..450090Clytia hemisphaericaexon
TCONS_00005424-exon-sc0000053-1575043694:449984..450090TCONS_00005424-exon-sc0000053-1575043694:449984..450090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:443173..450090 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29927	0.652574	0.932986	1.14259e-06	1.13139e-06	3.77706e-07	2.33833	3.16872	3.6439	8.85445	2.76502	2.92587	4.17568	13.1996	4.649	8.31525	2.04872	1.57942	35.0262	25.33	2.14542e-06	3.8612	1.52012e-06	2.15764	5.75263	3.42825	2.15114e-07	1.62853e-06	6.23771	7.9779
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001028Gprt_PLipase_D
IPR029002PLPC/GPLD1
Vocabulary: Molecular Function
TermDefinition
GO:0004621glycosylphosphatidylinositol phospholipase D activity
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region
molecular_function GO:0004621 glycosylphosphatidylinositol phospholipase D activity
Blast
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BLAST of TCONS_00005424 vs. Swiss-Prot (Human)
Match: PHLD (Phosphatidylinositol-glycan-specific phospholipase D OS=Homo sapiens GN=GPLD1 PE=1 SV=3)

HSP 1 Score: 292.738 bits (748), Expect = 2.556e-89
Identity = 169/421 (40.14%), Postives = 245/421 (58.19%), Query Frame = 2 
Query:  188 IAFLLSLMKTIHTCGTSTHISIAHEAATFYQGPLDAKVDYASLIQKHQDAFVAGNPYPDAMYPSVCFGGKYHEVAEDTHWAPFLNATVNYIRRKYPQPWDEATEKLVAFTFGYISHQVADISWHSLAGFKQGFIQAMANVNFHGVFDKAHTDADIGGDMLTQFDNSDDPIGSNTWYVPVDDLYEIYKEFYGGNQTIPKTVIELCSELLYIEYIAEKFAGAKIFKPFVKKSPFLLNQLDNYFLGGIHDMAAWTSKIWNETVFMLEHGTSACNMERSTMHVNCTGYLPAHNGQSVMARKNPGRGYPHKNGGWSYN---DVHKTKSLRGVYF-----TPGDKMAEYITGATEK--RKKVLGQTETSEH-------------SYSQIGKSMEEIKTPDDTYY-LVISAPTYSDLGRPSIGKVWFI 1378
            +  L SL      CG STH+ I H A  F Q   + +V+Y  L+ +HQDA+ AG  +PD  YPS+C GGK+H+V+E THW PFLNA+V+YIR  YP PW++ TEKLVAF FG  SH  AD+SWHSL G +QGF++ M  ++FHG + +AH+  D GGD+L+QF+ + + + +  WYVPV DL  IY++ Y G + I + VI  CS + ++E   E  A +K++  +  KSPFL+ Q   YFLGG+ DMA W++ I++ T FMLE+GTS CN+  + + + C G    H   S M + +      H+N   S     D +   + RGV+F     TP D M+ +I  A E+  R   +G ++ S+               Y+++G +M       D +  LV+ AP YS  G   IG+V+ I
Sbjct:   11 LIMLGSLCHRGSPCGLSTHVEIGHRALEFLQ-LHNGRVNYRELLLEHQDAYQAGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEKDTEKLVAFLFGITSHMAADVSWHSL-GLEQGFLRTMGAIDFHGSYSEAHSAGDFGGDVLSQFEFNFNYL-ARRWYVPVKDLLGIYEKLY-GRKVITENVIVDCSHIQFLEMYGEMLAVSKLYPTYSTKSPFLVEQFQEYFLGGLDDMAFWSTNIYHLTSFMLENGTSDCNLPENPLFIACGGQ-QNHTQGSKMQKND-----FHRNLTTSLTESVDRNINYTERGVFFSVNSWTP-DSMS-FIYKALERNIRTMFIGGSQLSQKHVSSPLASYFLSFPYARLGWAMTSADLNQDGHGDLVVGAPGYSRPGHIHIGRVYLI 419
The following BLAST results are available for this feature:
BLAST of TCONS_00005424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PHLD2.556e-8940.14Phosphatidylinositol-glycan-specific phospholipase... [more]
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