TCONS_00005423 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005423
Unique Name	TCONS_00005423
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1366

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000053:443155..450090+

transcript sequence

>TCONS_00005423 ID=TCONS_00005423|Name=TCONS_00005423|organism=Clytia hemisphaerica|type=transcript|length=1366bp
CAGAAATCAAGTTATCAACatgaattatcaaaacaaatgtgaCGTCACAC
ATATAAACACACGAGGGAGTCACAAGACGTACATAGAGGAAAGCTTCAAC
ATGGATTGTCAAGTATATCAGAAACAGGGAGAAGAAGGCTTTAGCACACA
AGCAAAATGAAGGTGATGCTTGCAATCGCATTCCTCTTATCACTTATGAA
GACCATTCATACATGTGGTACAAGCACTCATATCAGTATTGCACACGAGG
CTGCAACATTCTATCAAGGTCCACTGGATGCTAAAGTAGACTATGCTTCG
CTTATTCAAAAACATCAAGACGCCTTTGTGGCGGGAAATCCATACCCTGA
TGCGATGTATCCGTCTGTCTGTTTTGGTGGCAAATATCATGAAGTAGCGG
AGGATACACATTGGGCACCCTTCCTGAATGCAACTGTCAATTATATTCGA
AGGAAATATCCACAACCGTGGGACGAGGCCACAGAAAAGTTGGTCGCATT
CACTTTCGGTTACATTTCGCATCAAGTTGCGGATATTTCGTGGCACAGTT
TGGCTGGTTTCAAACAAGGGTTTATACAAGCTATGGCCAACGTCAATTTT
CATGGTGTTTTTGATAAAGCACATACCGATGCGGATATAGGAGGGGATAT
GTTGACACAATTTGATAATTCAGACGATCCTATTGGCTCCAATACATGGT
ATGTTCCAGTTGACGATTTATACGAAATCTATAAAGAATTTTATGGTGGT
AATCAAACTATTCCCAAAACTGTCATCGAACTGTGCAGTGAACTCCTTTA
TATTGAATACATAGCGGAGAAATTTGCTGGTGCAAAAATCTTCAAGCCGT
TTGTCAAGAAGTCACCTTTCCTTTTGAATCAACTGGATAATTATTTTCTG
GGTGGGATCCATGACATGGCTGCCTGGACTTCCAAAATATGGAATGAAAC
TGTTTTCATGCTTGAACATGGAACTTCTGCTTGCAATATGGAACGATCAA
CTATGCATGTTAACTGTACCGGCTATTTACCAGCTCATAATGGGCAATCG
GTCATGGCCAGAAAGAACCCGGGTAGAGGATACCCTCATAAAAATGGTGG
TTGGAGTTACAATGATGTGCATAAGACAAAGAGCTTGAGAGGCGTTTATT
TTACGCCCGGTGACAAAATGGCGGAATATATAACGGGCGCGACGGAGAAA
CGAAAGAAGGTTTTGGGACAGACGGAAACAAGTGAACACAGTTATTCCCA
AATCGGAAAGTCTATGGAAGAGATCAAAACACCAGACGACACATATTATC
TCGTCATCAGTGCCCCTACATACAGCGATCTTGGTCGTCCTTCCATCGGT
AAAGTTTGGTTTATAA

Run BLAST on NCBI

transcript from alignment at sc0000053:443155..450090+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005423 ID=TCONS_00005423|Name=TCONS_00005423|organism=Clytia hemisphaerica|type=transcript|length=6936bp|location=Sequence derived from alignment at sc0000053:443155..450090+ (Clytia hemisphaerica)
CAGAAATCAAGTTATCAACatgaattatcaaaacaaatgtgaCGTCACAC
ATATAAACACACGAGGGAGTCACAAGACGTACATAGAGGAAAGCTTCAAC
ATGGATTGTCAAGTATGCtgtagaacatgagaaatcacgTCATGTACGTT
TTATTATGAACTGCTGTTGCAGAAATGACATGCAActtatttttgtttta
gctCTCATCAAATTTCAGTGTGTGctggattttttactttttgtatgttt
tgtaTAGCGATCTTTATCCATATGGTTTTGTGTACTAGTTTTTTATCATG
GCTTTCTTACTTTTCTAGGTATATCAGAAACAGGGAGAAGAAGGCTTTAG
CACACAAGCAAAATGAAGGTAATTTTCTTCTTAGCTGAGCAAGTTAAGGC
TCCTTATATCAAATCATGCTGTAATGATCTTGAAGATTGATGTAGAGGGT
TTTTTCGAAAGCGCACAAACAGATCAACTTAGAGTCTCTGCAGCACATTC
TATCGAAGGAAATGTATCGTCTAAAAGTTCTGTATTAACCTTTGCACAGt
caattttcttcatttaaaaTGTGCTGCAAAGACTTTAGGTTAGTCTGTTT
GTGGTTTTGAAAACTACAGTCAGCTTGGACCTCTACTATTCAAATCATTT
GGCAATATGAACCAAAACATTATAGTCCCCTCAGCCACAAAGTATCGTCT
AAAGTACTCTCCATAATTCTCTAGTGTATAAGAAATTCGCAAATCCGCAT
CTCTTCATGATCGAGTCAAAAAGACTAATTAAAATCGCTGTTTATCGTCA
GGTGATGCTTGCAATCGCATTCCTCTTATCACTTATGAAGACCATTCATA
CATGTGGTACAAGCACTCATATCAGTATTGCACACGAGGCTGCAACATTC
TATCAAGGTCCACTGGATGCTAAAGTAGACTATGCTTCGCTTATTCAAAA
ACATCAAGACGCCTTTGTGGCGGGAAATCCATACCCTGATGCGATGTATC
CGTCTGTCTGTTTTGGTGGCAAATATCATGAAGTAGCGGAGGATACACAT
TGGGCACCCTTCCTGAATGCAACTGTCAATTATATTCGAAGGAAATATCC
ACAACCGTGGGACGAGGTATAAGAATATTAAATGAAACTGACCAGAAAAC
AAGAAGacacgtctttttataagaacatccaatattCTTGAATCCAtctg
atgttcttaaatttttgtgttttaggcctaaaaatatgtttaaaatgttc
ttaaatttgaccattttgtgagtaattttATGCAATTAGCTAAGAAAATG
GATGTTTTAGAATCCATAAGCCtcgaaatgttcttaaattgttttcaata
tttaggcaaaataagcctttatgtttttatataagtTTGTTTCTATAGAA
AATACGAAATGTAATATTCTTTGAAAgtgcaattcatgatattcatgacg
taatgttttctacggaaataccccggttttagccagtagtggcaaattta
aactagacttGTATAAAACTTGCCATTAATGGCAAAAACCGGGttttttc
cgtagaaaacattacgtcatgtctctcatgaatatcatgaattccttTCG
TTTTAGGCCACAGAAAAGTTGGTCGCATTCACTTTCGGTTACATTTCGCA
TCAAGTTGCGGATATTTCGTGGCACAGTTTGGCTGGTTTCAAACAAGGGT
TTATACAAGCTATGGCCAACGTCAATTTTCATGGTGTTTTTGATAAAGCA
CATACCGATGCGGATATAGGAGGGGATATGTTGACACAATTTGATAATTC
AGACGATCCTATTGGCTCCAATACATGGTAAGATATAATTTTCAAAGGTT
GACTTTTCTGCTATAAGGTTTGCTTGGAACCGCTAAGGCTTTTAATCGGG
ATTTAATCTTTTCTTAATCGCGATTAAGTCCGTGAGTTTCGAACAACTGT
TAATTGGCGCTAATCGTAATTTAATCCAGACTTGAGCTAATTCTGCGTGG
AAGGGTGGTAGGTCAGCTCTATCACTTTAAGGCTAGGTCTTCAAATTGAA
GATAGAAATAGCGAACTTGACAACGGATAGCATTGCCTTTTCGGCTTTCG
CCAGCGGAGACCTTTTAGCAAAATAAGTATGTTTACCACAGCCATTCTGG
GGATGTGATTAGCTCCAATACAATAGAACCAAGTTTATTTTAAGAAccaa
gtttataagaacataaaaaaaacaaggcCAGCTTCAGCTCAGAAGAAATT
TACAGCAAGATTTTCAATTAAGAACGTGTTTGAGAACATGTTAGGCTGGA
AATTACCAAGAAAATAAGCACATCTAGCCTTAGCCAaaatttaggtgttc
taataaaaaaacgtgtacatgttGAGTGTTTATTCTACTAGTACAGTATT
CTGACGATTTCTTTTTAGATTTCCCATTCTCACGATCTTTCACTGTCTTC
AGAAATGTACTCCTCCCTTGACATTACTCAAACGTTGACTTCACTTTATC
AGAAAGAGAGCTCAAAGTGATAACCTTTTTAggagatgagctggagtttt
tgcAAGATGCTTAACAATAGGGaagacgcgttctttagaaaaagtaataa
aatcgtttgtaTCAACATTTAACGTCATTCAACGAGTCAtgaaagaactt
gtaaaaactccggCTTGTCCCGTTTTTAGCCGTACTCGTCACACATTTAT
CAGACATTACTTAACCAGTACTTTAAACATATGAATGAAACtagtcaaat
tttatttttatttttgatattatttcaaatattatttcaatgaaaattag
tGTTGTTTGTTGGCATGATGTTTATTGCCGTCGACGTTGGAATTGACGGC
GTGAGAAAAAGCCGGCGACGGCTGATCTCAAACGACGTGCTGAAATGCCT
TGAAACAAAGCGACGAAGGATGCCAACTTGCTGTGAGATGATTTAGTTGT
TAGTTCGAAAATCAACTTGTTTTTCTCGTAGACAATCTCGTTGGCATCTT
GAAGGTTTTCTTTCAACTTTGCGATCTCTTCATTTCGTGCTCGTAGCATT
TCTTCTGCCTGTTTCTTCTccaacaaaaaaaacatctcttGGTGGACCAA
CTTTTTACCCAATGTCACTTTCTGCACATCAAGTTGCCATTGCATATCAG
AAATTTTCCAGTCTTTGTAAGCAATCTCGTCATTCAGCTGTGTGATGCGA
GCTGAAAAGTTACGAGGTGGTTTGACAGGTGCAGTTTGTGTTGATTTTGC
GGCAGTATTGGTCACATCTGGAATTCGGTGTTTGTGTTTTTCGTCAAGCA
ATTTCAAGACATCATCAGTCAACCAAGTCATGAAGTTCTCTCCTTGGCTT
GGTTTACATTCTTCTGTCTTCAATTGATGACTTTCTTTCGATTGATTTTG
TTGGTCGATAAACTTCAATACATCTCGTGTCAGAAACGAGACAAATTTCT
CTTCTTCACTGAATTCAATATTCTTGATCATTCTTTGACCAGGATTNGCA
ACTTCAATACATCTCGTGTGAGAAACGAGACGAATTTCTCTTCTTCACTG
AAATCATTATTCTTGATCATTCTTTGACCAGGATTCCAAAAAACGAGGAC
ACAATcctcaatttcaaaacaagaaaacgtTTCTTCTTGTTTACAcattg
ttttcttgttaaattttcacttttaactTGATATCGATACACTTGAATAC
TCAAAATACGCACTAGATTTGTCGAAAATACGAGCGAACTCTCTTTTCAA
CAATACTTAATCTAGAACTGAATTTCTAAAATCTAAACTctgtttcatta
aattttctttttatttgacgtcaaatattatACATGCAGTAAGAactgac
gtcactttttctccAATCTGCTGCATTGATATAGTGCTCATGAGCCTCGA
CTTCTTAAGGCTATATCTGCCCTATTggatcatttttaagattttagttC
CCGAGATCCTAAGCATCAAAGTCTTGAATTTAATGTTAAGACCCTGAGTG
AAGCCTCAATCTAAATTCCAGAAGCACCTATAAACATTTATGGTTATGAA
GTTTTGACAGGGAATTTCCTATTCATGACGTAacgttttctacggaaata
ccccggttttagccagtggtggaaaatttaaactagacaaaagttgtata
aaatttcccactactggcaaaaaccaggGTAGAAGACATCACGTCATGAA
GATCATGAATGGAATATTATGACTCTGGTTATAGGTATGTTCCAGTTGAC
GATTTATACGAAATCTATAAAGAATTTTATGGTGGTAATCAAACTATTCC
CAAAACTGTCATCGAACTGTGCAGTGAACTCCTTTATATTGAATACATAG
CGGAGAAATTTGCTGGTGCAAAAATCTTCAAGCCGTTTGTCAAGAAGTCA
CCTTTCCTTTTGAATCAACTGGATAATTATTTTCTGGGTAAGTTTTCTTC
CCCtaataattttttgagaaatgttattttttttaaattttctgataGAT
TACTGATTTTTCATTCTATACCTccaaatgaaattttgagtGCATTTACC
GGCCATTTCGaacttagaaattttcaaaaattcacctTCAAACCTAACCT
GTTTGCCCTTGCGGTGTCACAAAACCTTAGGCTTTCCATtatcaaaatgc
ttcctacggaaATGTTTGTTAGTTAGACCATGGCCAGACTATTTATGGCA
ATCATGCAATTCTTAACGTACTATGcttcagtgccgtagcaactgggggg
caagggggggctatgccccccaataattttttcaaaaatggttattttgc
aaaatgcaaagtttttcttttttaatttgTCATAATTGTCTTTTATGTGC
ATGTTTTGAGTGTATTTTTAggcaatctagagctcaattttcaaaattcc
ccccctcgggcaaaccatggttggccctcgcggtgtcactaaacttcagc
ccccccaatatggaaatgcttcctacggcactgtactTCGTAACCGTAAT
CTTTCAGAGAAAAACGCTTATCAGGCGATACCAACTTGATTAGTTTTAca
ggcccgaccgaccctgaaagtccaaaaaatcgaaataaaaataaaattaa
ttttggtagTAAAGTTTTTACAGACtcccaaattttaaaaatctttttta
gtttttccagggttttgagaattttatgttaaatttttcattttatacaC
GAATTCGagctttttttgtctttttattttttatttcgcatttttgtcat
GATGTATTAGTTTTTGCCTTCATTTTAGGAGATTTTAaatgaaattctac
ttttatttttatttttttcgccgaccgaccgaccgacccttttcttgggt
agcttggcccgtaaaacaacaaattgaatTGGCCTCGCCTAAGTTGGTAc
tctaaaaaaagcaaaaataatggAAGGGACAAATTGTAGCACAAATTGAT
ATTACTCCGTCACAGTTATCgcattatcatataacacccatatAACTGTA
TTATACGGATTATAAACGAATCTAGTCTAAAAAGATGGTAATTTTACTAC
TAGAACATTCGCTTCCAGAAAAATCAGACTATTCGTGAAATACACGTATT
TTGATGTTAAGTTAATAATCATTAATAAACAAGATTTTCCAAACCAAATG
CACTGATAAAGTAAGCCATGTGTTTATGTTCTAGAAGAGAATGTGAATCA
CATTTCAAAATCCTCTAGTTATGCTAGTAGAGTATAAACGATGTTATCGT
TCgtgttacagtgatagtaaaggcgggaaagtatggcggtatggcgttat
ggcgatATTCGgagaaaaaatcggcgggaaaGTTTCGAAGACTGGCTAAC
TCtcccgactgtaaactcttttcggcaaaaaacccggttgcgaattttct
tcggcgtTGGGCTTATTCCTTTTTCCTTAGATAGTGATTGGTCttactat
aacatagtctaacTAAAGTAGTGAATCATTTCTATTTTCTCCAACAGGTG
GGATCCATGACATGGCTGCCTGGACTTCCAAAATATGGAATGAAACTGTT
TTCATGCTTGAACATGGAACTTCTGCTTGCAATATGGAACGATCAACTAT
GCATGTTAACTGTACCGGCTATTTACCAGCTCATAATGGGCAATCGGTCA
TGGCCAGAAAGAACCCGGGTAGAGGATACCCTCATAAAAATGGTGGTTGG
AGTTACAATGATGTGCATAAGACAAAGAGCTTGAGAGGCGTTTATTTTAC
GCCCGGTGACAAAATGGCGGAATATATAACGGGCGCGACGGAGAAACGAA
AGAAGGTTTTGGGACAGACGGAAACAAGTGAACACAGTTATTCCCAAATC
GGAAAGTAAGATCaagtttgattttcattttagcaTACGCAACCCCCTCT
CTTAGCTCTCTAGCCTCTCTAGTAATAGTCATGCGTTCAAATGCTTGAAA
GCTAATAAACCAGAATCAAGCCGTTAAAATATGTTCCAATAAATGATTGA
TTTATAAGTTTGAAAcagtgaaaattttcaataaaattagaGCGACGCTT
ATCGAAAATCTGTGACCCTGTAGGAGGATATTTAATGCGTAAAGCGTTAG
CCTGCTGATTATGAATATATGCCACTGGAAGTAGGTTAcctttttggaaa
aaactttgcattttagTGTGAAAAAAGCGGTATAGCCCATCGATTGATAA
GGGTAGTACGAGAATAAGAgtagaaagaaatgaaaaactgGTTTTAATTA
TGAGCTTTACAAGTACCTCAGCAACATCAACATCATtatctcattttttt
tttctaaattttttgaattttcgtaACAGGTCTATGGAAGAGATCAAAAC
ACCAGACGACACATATTATCTCGTCATCAGTGCCCCTACATACAGCGATC
TTGGTCGTCCTTCCATCGGTAAAGTTTGGTTTATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003090	XLOC_003090	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000053	supercontig	sc0000053:443155..450090 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.05913	3.34694	0.549442	1.25678	0.744326	0.555501	0.000772199	0.338771	8.76984	4.68084	20.5036	4.20929	14.7432	12.4266	48.248	54.8605	14.525	19.1182	30.0657	38.5111	11.5328	7.98228	4.57057	3.47573	0.898845	0.000329962	0.967054	2.96158	13.2619	19.222

Blast

[Close]

BLAST of TCONS_00005423 vs. Swiss-Prot (Human)
Match: PHLD (Phosphatidylinositol-glycan-specific phospholipase D OS=Homo sapiens GN=GPLD1 PE=1 SV=3)

HSP 1 Score: 292.738 bits (748), Expect = 2.264e-89
Identity = 169/421 (40.14%), Postives = 245/421 (58.19%), Query Frame = 1

Query:  175 IAFLLSLMKTIHTCGTSTHISIAHEAATFYQGPLDAKVDYASLIQKHQDAFVAGNPYPDAMYPSVCFGGKYHEVAEDTHWAPFLNATVNYIRRKYPQPWDEATEKLVAFTFGYISHQVADISWHSLAGFKQGFIQAMANVNFHGVFDKAHTDADIGGDMLTQFDNSDDPIGSNTWYVPVDDLYEIYKEFYGGNQTIPKTVIELCSELLYIEYIAEKFAGAKIFKPFVKKSPFLLNQLDNYFLGGIHDMAAWTSKIWNETVFMLEHGTSACNMERSTMHVNCTGYLPAHNGQSVMARKNPGRGYPHKNGGWSYN---DVHKTKSLRGVYF-----TPGDKMAEYITGATEK--RKKVLGQTETSEH-------------SYSQIGKSMEEIKTPDDTYY-LVISAPTYSDLGRPSIGKVWFI 1365
            +  L SL      CG STH+ I H A  F Q   + +V+Y  L+ +HQDA+ AG  +PD  YPS+C GGK+H+V+E THW PFLNA+V+YIR  YP PW++ TEKLVAF FG  SH  AD+SWHSL G +QGF++ M  ++FHG + +AH+  D GGD+L+QF+ + + + +  WYVPV DL  IY++ Y G + I + VI  CS + ++E   E  A +K++  +  KSPFL+ Q   YFLGG+ DMA W++ I++ T FMLE+GTS CN+  + + + C G    H   S M + +      H+N   S     D +   + RGV+F     TP D M+ +I  A E+  R   +G ++ S+               Y+++G +M       D +  LV+ AP YS  G   IG+V+ I
Sbjct:   11 LIMLGSLCHRGSPCGLSTHVEIGHRALEFLQ-LHNGRVNYRELLLEHQDAYQAGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEKDTEKLVAFLFGITSHMAADVSWHSL-GLEQGFLRTMGAIDFHGSYSEAHSAGDFGGDVLSQFEFNFNYL-ARRWYVPVKDLLGIYEKLY-GRKVITENVIVDCSHIQFLEMYGEMLAVSKLYPTYSTKSPFLVEQFQEYFLGGLDDMAFWSTNIYHLTSFMLENGTSDCNLPENPLFIACGGQ-QNHTQGSKMQKND-----FHRNLTTSLTESVDRNINYTERGVFFSVNSWTP-DSMS-FIYKALERNIRTMFIGGSQLSQKHVSSPLASYFLSFPYARLGWAMTSADLNQDGHGDLVVGAPGYSRPGHIHIGRVYLI 419

The following BLAST results are available for this feature:

BLAST of TCONS_00005423 vs. Swiss-Prot (Human)

BLAST of TCONS_00005423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PHLD	2.264e-89	40.14	Phosphatidylinositol-glycan-specific phospholipase...	[more]

You are here

TCONS_00005423 (transcript) - C. hemisphaerica