TCONS_00005420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005420
Unique NameTCONS_00005420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1906

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005420 ID=TCONS_00005420|Name=TCONS_00005420|organism=Clytia hemisphaerica|type=transcript|length=1906bp
TGATGATTTTGTTATGATTTTGCTACTTTCAGtgttatcaaaattataaa
aaatgagCACGGTTGCAGAATTTGGAAACCCTTTGCGCAAATTCAAGTTG
GTTTTTCTTGGGGAACAAAGTGttgGGAAGACATCAATAATCACTCGTTT
TATGTACGACAATTTTGATAACACTTATCAGGCGACAATTGGAATAGATT
TTTTATCAAAGACAATGTATCTTGAAGACAGAACAGTTAGGCTGCAGTTG
TGGGACACAGCAGGACAAGAGAGATTCCGAAGTTTAATTCCAAGCTATAT
CAGAGATTCTTCTGTTGCTGTGGTTGTTTATGATATTACAAataCAAATT
CTTTTCATCAGACAAAGAAATGGATCGAGGACGTAAAATCAGAAAGAGGA
GAAGACGTGGTCATAATGTTGGTTGGGAATAAAACTGATCTTTCTGACAG
GAGGCAAGTTTCCACAGAAGAAGGTGAATCTAAAGCCAAAGAAATGGACG
TGTTGTTTATAGAAACAAGTGCTAAAGCAGGTCACAATGTTAAACAGcTT
TTCAGAAGGGTTGCATCAGCATTGCCTGGTATGGAAAAGCCAGAACCAGA
GAGCAAACAAGGTGTCATTCCGTCACCGCTGGTACCACCAGAACCGGACC
AAGCAGCTAGTAACTGTTCATGTTAGATTCCagttaaaaaatttaatgaa
ttgAGTTAAATATCATCGTCTATAGTCACAGTTATAGTTATTTTTAAGTT
AGAAAGTCAGATCTTGACACACAAAAGATttggtttgaaatttcaaaGGT
TATGTTGAATCAATGAATCGATACGCTGAAAGAGTTATATGACGTCATTC
CACACTGGTTTTAATTTAAAAACCGATCACCTTGTAGCGTCAAGACAAGG
GTTGATAAATGTATTACGCATACAGAGAACTCATGCATTGTGAAATCTCA
agaactttatatttttatagCACGGGTTTACTTAAATAGTGTCTAGTGAG
TATATAGATAGAGTTAGAATCACCATAATTGAACTGGGAAGTAAACCTTG
TTCAAGGAGGTTGATCACCGTATTTATTTTATTAGTTCCTACAGACCATT
CAAAAagacaaaactttttaaagacgttatttattgtatttttcataaac
aacttttttctgtgtatgtttttatgtttctttttgtattatttttgtta
tatattttatttttggataATAGTGCATTACATTTTTACACCCATTTTTA
TATTTAAACATTAGACGACAAGACTGTTTTATGACATTGtaaaactgaaa
tatttttatggTAGAAATTTTGCATTCACTTATTTTTTGtaacgtttttt
taatattggTGTTAAATgagttttttgtactttttgttttgtttaatgCA
TTTGAAACATGTAACACAGACGAAtgtatcttttcaaaaaatatttaaag
aataGCTTTAAGAATACTAAAATAGGGTGTCTGAtgataaaaattgttaa
aaggGTCATACACGGTAAATAATTAGTTAAGAAAAGGCTCTACTCTATGT
GACATATTCTGATGAAAGAccaattaaattcttaaaagGGTCATACAGTA
AATAAGGCTCTACTCTTGATGACATTTCTACCGAATTTTTCAGAAAGTGA
ATCTATGGATCCGGTGATAGATTAAAAACAGCTTCAGCCTCTGTATAAAA
TGCCTCTTGTGAGAGGATACCTTAACCTTTTCTCTTACAATGCAAAACAG
TTATCACAGTAGAAAAGTGACTAATTACTAACTGTTTGCTTGTAATGTTA
TGAGCTTCACTCTCAATACAGCTCGGTATGATAATATTGTTCTCCTacta
tttatttcatttttattttttttcatctttttatttttgtaactaAAATG
AAATAC
Run BLAST on NCBI

transcript from alignment at sc0000053:394945..400084+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005420 ID=TCONS_00005420|Name=TCONS_00005420|organism=Clytia hemisphaerica|type=transcript|length=5140bp|location=Sequence derived from alignment at sc0000053:394945..400084+ (Clytia hemisphaerica)
TGATGATTTTGTTATGATTTTGCTACTTTCAGtgttatcaaaattataaa
aaatgagCACGGTTGCAGAATTTGGAAACCCTTTGCGCAAATTCAAGTTG
GTTTTTCTTGGGGAACAAAGTGGTGAGTAGTGATTTCGTTTTCATTTATA
ATTCATTCAATTAAAGTAGGGTATccagggttcagacagaccctggaaaa
cctggaaatatgataaattttcagaaaaatcagggaaacccaggggaaaa
atttttttttcccagTCTGCTCAAGGGAAACTCatggaattttatttttt
gaagaatgaatggaaaaaacagatttaaaagtttttttagttttaaagtg
tTTATTCATATGCAGTATTTGTAGCTTTAATTTTTACCTTANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGTTTACCATTTGATTT
GTGTGCCTTTTGTTTAAAGATACATCTCTTTTGACTCTGcttagttttta
tggtttgcttgatactcagggaaaaaatagggaaaaagtagctaaaattc
agggaaactcagggaattttattttcgaaggtctgtctgaaccctggTAT
CATAatagaaaataataataataattaaacatatttatttttttagttgG
GAAGACATCAATAATCACTCGTTTTATGTACGACAATTTTGATAACACTT
ATCAGGTTGATAAAATATTTGGTATCTTTTTTATTATCATGATTTTtaga
ttgtttcatttttaaatttatctTCTATTATCCATTATTCATTTTAAAGT
CAAGGCttgaaataacgatttcaagtgggtcggacaaaatgtccgatcag
ggttgctttagcttgaaaattatgatttttgggtcggacaatgtccgatg
tccgaccgttatttcgagccctgtaaAGTCATATGAATATGATTGTATGT
CTTGAGGGCtttgctttaaaatttttagacaaaatttcTCTTCATCACTG
CAACAAGTAGTATTAATTTTTCAGGCGACAATTGGAATAGATTTTTTATC
AAAGACAATGTATCTTGAAGACAGAACAGTAAGAACCAAATTTATTACAT
AACTAGTATACTTGGTGCTTGGTTCATaataattttttagaatttttcaa
tatattttacaaaaacacTATAAAAACACTATAAAGCAATAGCACGATAT
ATTAATTCACTATCGATTCTGAAAACTAACTAGTATTGGCATGCAATTTA
GTGCTTCACACGAGTGAACGTAGAGAGTtaatcaccatatttccctaaca
ccctgcccTACCTTCACTTGTATATCATTCTCTCTCAAACtggctgataa
tcgaagtatcaattgcagatgtagaacgataaacttgTTATACATAGTCC
TTCATAATTTAGATCaatattttgggaaaaaagGTTCACTTAAGGGTTTG
AATGTCAAAGAAATCTCACCATATTGTTTTAGTCGTTTGATTTGTAAAAA
TCTTCATATCCATTTAGGTTAGGCTGCAGTTGTGGGACACAGCAGGACAA
GAGAGATTCCGAAGTTTAATTCCAAGCTATATCAGAGATTCTTCTGTTGC
TGTGGTTGTTTATGATATTACAAGTAAGCTTTGCTTAATGCTTATGCATA
ACATTTTAGTCAAttgtaaattttaaatcaataaacttataaagactttc
tttttttttagataCAAATTCTTTTCATCAGACAAAGAAATGGATCGAGG
ACGTAAAATCAGAAAGAGGAGAAGACGTGGTCATAATGTTGGTTGGGAAT
AAAACTGATCTTTCTGACAGGAGGTCTGTATgaagtcaaaaactttcttc
aATATAATATTGTCATTTGGAATAAGTAGCTTTtgtagaaaattttttat
caaatgatcAATGTTTTAGTTCTCAAATCTTATGGCAAAACGGAATATGA
AACAGTGTACAATGTTGGCCATAATATTTAGCAAAATAGGAATCTCCCCt
gcataatttaaaaaaattgcatGTAGTTTTTAAGTGCCTTGATAACTTAA
GGTTGACGGTTGATGATCCAAAAGCTTGTGAATGGTCCGACTAGAGGCTG
AGAGTTTAGCCTGGATGCCataaacccctcccaaatcgaaatattcgatt
agATAAAGtagaaagcctgaaaatgtcatTCGCGCCCAAACTTTATATTC
TGCAAAACGCTAAAATACCTAGAAATGCCAACATATATAATTATTCTGAC
CACTATTgtagttttttataataattatataCCAGATCTCAATAGTTCTT
AATGACTTTTTGTCAcgtgaaaaataatttgtgaaggcaatatttgaatt
ttggtgtATCTAACTGACTAGCGAATTNGAAGTATCAATTGATgtcaaat
gagcttagtaaagctcaaattgcagatgtagaacgataaacttgTTATAC
ATAGTCCTTCATAATTTAGATCaatattttgggaaaaaagGTTCACTTAA
GGGTTTGAATGTCAAAGAAATCTCACCATATTGTTTTAGTCGTTTGATTT
GTAAAAATCTTCATATCCATTTAGGTTAGGCTGCAGTTGTGGGACACAGC
AGGACAAGAGAGATTCCGAAGTTTAATTCCAAGCTATATCAGAGATTCTT
CTGTTGCTGTGGTTGTTTATGATATTACAAGTAAGCTTTGCTTAATGCTT
ATGCATAACATTTTAGTCAAttgtaaattttaaatcaataaacttataaa
gactttctttttttttagataCAAATTCTTTTCATCAGACAAAGAAATGG
ATCGAGGACGTAAAATCAGAAAGAGGAGAAGACGTGGTCATAATGTTGGT
TGGGAATAAAACTGATCTTTCTGACAGGAGGTCTGTATgaagtcaaaaac
tttcttcaATATAATATTGTCATTTGGAATTAGTAGCTTTTGTAGAAAAT
CTTTTATCAAATGATCGATGTTTTAGTTCTCAAATCTTATTATGGCAAAA
CGGAAAATGAAACAGTCTACAATGTTGGCCATAATATTTAGCAAAATAGG
AATCTCCCtgcataattttaaaaaattgcatgTAGTTTTTAAGTGCCTTG
ATAACTTAAGGTTGGACTGTAGACTTTCAAGCTTGATGATCCAAAAGCTT
GTGAATGGTCCGACCAGAGGCTGAGAGTATAGCCTGGATGCCATataccc
ctcccaaatcgaaatattcgattagATAAAGtagaaagcctgaaaatgtc
atTCGCGCCCAAACTTTATATTCTGCAAAACGCTAAAATACCCAGAAATG
CCAACATATTCTGACCACCATTgtagttttttataataattatataCCAG
ATCTCAATAGTTCTTAATGACTTTTTGTCAcgtgaaaaataatttgtgaa
ggtaatatttgaattttggtgtATCTAACTGACTAGCGAATTCTCCttgt
ttatgtttcattttgTGTTGTTTCTCAGGCAAGTTTCCACAGAAGAAGGT
GAATCTAAAGCCAAAGAAATGGACGTGTTGTTTATAGAAACAAGTGCTAA
AGCAGGTCACAATGTTAAACAGGTAGAATATCATCAATGATGTACTATGT
ACGATTACTGCTAGATTGATCAATCTTTTGTTTACTTATTTGTAACCTTA
GTCAAATCTTCTTCTCTTTACCTTCTCAAcagcttttattttgaaattac
gttttgttttgtgtttttcttattttgacaaTAACTTAACGATGTATTTA
TTAACaagcttgtttatttttatttcttcagcTTTTCAGAAGGGTTGCAT
CAGCATTGCCTGGTATGGAAAAGCCAGAACCAGAGAGCAAACAAGGTGTC
ATTCCGTCACCGCTGGTACCACCAGAACCGGACCAAGCAGCTAGTAACTG
TTCATGTTAGATTCCagttaaaaaatttaatgaattgAGTTAAATATCAT
CGTCTATAGTCACAGTTATAGTTATTTTTAAGTTAGAAAGTCAGATCTTG
ACACACAAAAGATttggtttgaaatttcaaaGGTTATGTTGAATCAATGA
ATCGATACGCTGAAAGAGTTATATGACGTCATTCCACACTGGTTTTAATT
TAAAAACCGATCACCTTGTAGCGTCAAGACAAGGGTTGATAAATGTATTA
CGCATACAGAGAACTCATGCATTGTGAAATCTCAagaactttatattttt
atagCACGGGTTTACTTAAATAGTGTCTAGTGAGTATATAGATAGAGTTA
GAATCACCATAATTGAACTGGGAAGTAAACCTTGTTCAAGGAGGTTGATC
ACCGTATTTATTTTATTAGTTCCTACAGACCATTCAAAAagacaaaactt
tttaaagacgttatttattgtatttttcataaacaacttttttctgtgta
tgtttttatgtttctttttgtattatttttgttatatattttatttttgg
ataATAGTGCATTACATTTTTACACCCATTTTTATATTTAAACATTAGAC
GACAAGACTGTTTTATGACATTGtaaaactgaaatatttttatggTAGAA
ATTTTGCATTCACTTATTTTTTGtaacgtttttttaatattggTGTTAAA
TgagttttttgtactttttgttttgtttaatgCATTTGAAACATGTAACA
CAGACGAAtgtatcttttcaaaaaatatttaaagaataGCTTTAAGAATA
CTAAAATAGGGTGTCTGAtgataaaaattgttaaaaggGTCATACACGGT
AAATAATTAGTTAAGAAAAGGCTCTACTCTATGTGACATATTCTGATGAA
AGAccaattaaattcttaaaagGGTCATACAGTAAATAAGGCTCTACTCT
TGATGACATTTCTACCGAATTTTTCAGAAAGTGAATCTATGGATCCGGTG
ATAGATTAAAAACAGCTTCAGCCTCTGTATAAAATGCCTCTTGTGAGAGG
ATACCTTAACCTTTTCTCTTACAATGCAAAACAGTTATCACAGTAGAAAA
GTGACTAATTACTAACTGTTTGCTTGTAATGTTATGAGCTTCACTCTCAA
TACAGCTCGGTATGATAATATTGTTCTCCTactatttatttcatttttat
tttttttcatctttttatttttgtaactaAAATGAAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003088XLOC_003088Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005420-exon-sc0000053-1491911889:394945..395066TCONS_00005420-exon-sc0000053-1491911889:394945..395066Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1510915933:394945..395066TCONS_00005420-exon-sc0000053-1510915933:394945..395066Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1575043694:394945..395066TCONS_00005420-exon-sc0000053-1575043694:394945..395066Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1491911889:395591..395649TCONS_00005420-exon-sc0000053-1491911889:395591..395649Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1510915933:395591..395649TCONS_00005420-exon-sc0000053-1510915933:395591..395649Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1575043694:395591..395649TCONS_00005420-exon-sc0000053-1575043694:395591..395649Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1491911889:395969..396022TCONS_00005420-exon-sc0000053-1491911889:395969..396022Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1510915933:395969..396022TCONS_00005420-exon-sc0000053-1510915933:395969..396022Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1575043694:395969..396022TCONS_00005420-exon-sc0000053-1575043694:395969..396022Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1491911889:396462..396567TCONS_00005420-exon-sc0000053-1491911889:396462..396567Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1510915933:396462..396567TCONS_00005420-exon-sc0000053-1510915933:396462..396567Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1575043694:396462..396567TCONS_00005420-exon-sc0000053-1575043694:396462..396567Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1491911889:397713..397824TCONS_00005420-exon-sc0000053-1491911889:397713..397824Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1510915933:397713..397824TCONS_00005420-exon-sc0000053-1510915933:397713..397824Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1575043694:397713..397824TCONS_00005420-exon-sc0000053-1575043694:397713..397824Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1491911889:398423..398516TCONS_00005420-exon-sc0000053-1491911889:398423..398516Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1510915933:398423..398516TCONS_00005420-exon-sc0000053-1510915933:398423..398516Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1575043694:398423..398516TCONS_00005420-exon-sc0000053-1575043694:398423..398516Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1491911889:398726..400084TCONS_00005420-exon-sc0000053-1491911889:398726..400084Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1510915933:398726..400084TCONS_00005420-exon-sc0000053-1510915933:398726..400084Clytia hemisphaericaexon
TCONS_00005420-exon-sc0000053-1575043694:398726..400084TCONS_00005420-exon-sc0000053-1575043694:398726..400084Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:394945..400084 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.40423	4.17929	5.10505	4.8787	6.34345	5.24289	11.1276	11.4156	16.735	14.3151	18.9144	31.5365	11.1464	11.8211	7.92601	7.73295	2.62477	3.24032	5.91891	7.79835	1.61706	1.27185	4.08299	3.67571	1.14475	1.77622	3.21065	2.13136	3.65853	3.56985
Blast
[Close]
BLAST of TCONS_00005420 vs. Swiss-Prot (Human)
Match: RAB6B (Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.976e-113
Identity = 162/208 (77.88%), Postives = 183/208 (87.98%), Query Frame = 2 
Query:   53 MSTVAEFGNPLRKFKLVFLGEQSVGKTSIITRFMYDNFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNTNSFHQTKKWIEDVKSERGEDVVIMLVGNKTDLSDRRQVSTEEGESKAKEMDVLFIETSAKAGHNVKQLFRRVASALPGMEKPEPESKQGVIPSPL-VPPEPDQAASNCSC 673
            MS   +FGNPLRKFKLVFLGEQSVGKTS+ITRFMYD+FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF QT KWI+DV++ERG DV+IMLVGNKTDL+D+RQ++ EEGE +AKE+ V+FIETSAK G+NVKQLFRRVASALPGME  + +SK+G+I   L  P EP  +   CSC
Sbjct:    1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCSC 208
The following BLAST results are available for this feature:
BLAST of TCONS_00005420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB6B1.976e-11377.88Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6... [more]
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