|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005418 ID=TCONS_00005418|Name=TCONS_00005418|organism=Clytia hemisphaerica|type=transcript|length=1906bp TGATGATTTTGTTATGATTTTGCTACTTTCAGtgttatcaaaattataaa aaatgagCACGGTTGCAGAATTTGGAAACCCTTTGCGCAAATTCAAGTTG GTTTTTCTTGGGGAACAAAGTGttgGGAAGACATCAATAATCACTCGTTT TATGTACGACAATTTTGATAACACTTATCAGGCGACAATTGGAATAGATT TTTTATCAAAGACAATGTATCTTGAAGACAGAACAGTTAGGCTGCAGTTG TGGGACACAGCAGGACAAGAGAGATTCCGAAGTTTAATTCCAAGCTATAT CAGAGATTCTTCTGTTGCTGTGGTTGTTTATGATATTACAAataCAAATT CTTTTCATCAGACAAAGAAATGGATCGAGGACGTAAAATCAGAAAGAGGA GAAGACGTGGTCATAATGTTGGTTGGGAATAAAACTGATCTTTCTGACAG GAGGCAAGTTTCCACAGAAGAAGGTGAATCTAAAGCCAAAGAAATGGACG TGTTGTTTATAGAAACAAGTGCTAAAGCAGGTCACAATGTTAAACAGcTT TTCAGAAGGGTTGCATCAGCATTGCCTGGTATGGAAAAGCCAGAACCAGA GAGCAAACAAGGTGTCATTCCGTCACCGCTGGTACCACCAGAACCGGACC AAGCAGCTAGTAACTGTTCATGTTAGATTCCagttaaaaaatttaatgaa ttgAGTTAAATATCATCGTCTATAGTCACAGTTATAGTTATTTTTAAGTT AGAAAGTCAGATCTTGACACACAAAAGATttggtttgaaatttcaaaGGT TATGTTGAATCAATGAATCGATACGCTGAAAGAGTTATATGACGTCATTC CACACTGGTTTTAATTTAAAAACCGATCACCTTGTAGCGTCAAGACAAGG GTTGATAAATGTATTACGCATACAGAGAACTCATGCATTGTGAAATCTCA agaactttatatttttatagCACGGGTTTACTTAAATAGTGTCTAGTGAG TATATAGATAGAGTTAGAATCACCATAATTGAACTGGGAAGTAAACCTTG TTCAAGGAGGTTGATCACCGTATTTATTTTATTAGTTCCTACAGACCATT CAAAAagacaaaactttttaaagacgttatttattgtatttttcataaac aacttttttctgtgtatgtttttatgtttctttttgtattatttttgtta tatattttatttttggataATAGTGCATTACATTTTTACACCCATTTTTA TATTTAAACATTAGACGACAAGACTGTTTTATGACATTGtaaaactgaaa tatttttatggTAGAAATTTTGCATTCACTTATTTTTTGtaacgtttttt taatattggTGTTAAATgagttttttgtactttttgttttgtttaatgCA TTTGAAACATGTAACACAGACGAAtgtatcttttcaaaaaatatttaaag aataGCTTTAAGAATACTAAAATAGGGTGTCTGAtgataaaaattgttaa aaggGTCATACACGGTAAATAATTAGTTAAGAAAAGGCTCTACTCTATGT GACATATTCTGATGAAAGAccaattaaattcttaaaagGGTCATACAGTA AATAAGGCTCTACTCTTGATGACATTTCTACCGAATTTTTCAGAAAGTGA ATCTATGGATCCGGTGATAGATTAAAAACAGCTTCAGCCTCTGTATAAAA TGCCTCTTGTGAGAGGATACCTTAACCTTTTCTCTTACAATGCAAAACAG TTATCACAGTAGAAAAGTGACTAATTACTAACTGTTTGCTTGTAATGTTA TGAGCTTCACTCTCAATACAGCTCGGTATGATAATATTGTTCTCCTacta tttatttcatttttattttttttcatctttttatttttgtaactaAAATG AAATAC Run BLAST on NCBI protein sequence of TCONS_00005418-protein >TCONS_00005418-protein ID=TCONS_00005418-protein|Name=TCONS_00005418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MSTVAEFGNPLRKFKLVFLGEQSVGKTSIITRFMYDNFDNTYQATIGIDF LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNTNS FHQTKKWIEDVKSERGEDVVIMLVGNKTDLSDRRQVSTEEGESKAKEMDV LFIETSAKAGHNVKQLFRRVASALPGMEKPEPESKQGVIPSPLVPPEPDQ AASNCSC Run BLAST on NCBI transcript from alignment at sc0000053:394945..400084+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005418 ID=TCONS_00005418|Name=TCONS_00005418|organism=Clytia hemisphaerica|type=transcript|length=5140bp|location=Sequence derived from alignment at sc0000053:394945..400084+ (Clytia hemisphaerica) TGATGATTTTGTTATGATTTTGCTACTTTCAGtgttatcaaaattataaa
aaatgagCACGGTTGCAGAATTTGGAAACCCTTTGCGCAAATTCAAGTTG
GTTTTTCTTGGGGAACAAAGTGGTGAGTAGTGATTTCGTTTTCATTTATA
ATTCATTCAATTAAAGTAGGGTATccagggttcagacagaccctggaaaa
cctggaaatatgataaattttcagaaaaatcagggaaacccaggggaaaa
atttttttttcccagTCTGCTCAAGGGAAACTCatggaattttatttttt
gaagaatgaatggaaaaaacagatttaaaagtttttttagttttaaagtg
tTTATTCATATGCAGTATTTGTAGCTTTAATTTTTACCTTANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGTTTACCATTTGATTT
GTGTGCCTTTTGTTTAAAGATACATCTCTTTTGACTCTGcttagttttta
tggtttgcttgatactcagggaaaaaatagggaaaaagtagctaaaattc
agggaaactcagggaattttattttcgaaggtctgtctgaaccctggTAT
CATAatagaaaataataataataattaaacatatttatttttttagttgG
GAAGACATCAATAATCACTCGTTTTATGTACGACAATTTTGATAACACTT
ATCAGGTTGATAAAATATTTGGTATCTTTTTTATTATCATGATTTTtaga
ttgtttcatttttaaatttatctTCTATTATCCATTATTCATTTTAAAGT
CAAGGCttgaaataacgatttcaagtgggtcggacaaaatgtccgatcag
ggttgctttagcttgaaaattatgatttttgggtcggacaatgtccgatg
tccgaccgttatttcgagccctgtaaAGTCATATGAATATGATTGTATGT
CTTGAGGGCtttgctttaaaatttttagacaaaatttcTCTTCATCACTG
CAACAAGTAGTATTAATTTTTCAGGCGACAATTGGAATAGATTTTTTATC
AAAGACAATGTATCTTGAAGACAGAACAGTAAGAACCAAATTTATTACAT
AACTAGTATACTTGGTGCTTGGTTCATaataattttttagaatttttcaa
tatattttacaaaaacacTATAAAAACACTATAAAGCAATAGCACGATAT
ATTAATTCACTATCGATTCTGAAAACTAACTAGTATTGGCATGCAATTTA
GTGCTTCACACGAGTGAACGTAGAGAGTtaatcaccatatttccctaaca
ccctgcccTACCTTCACTTGTATATCATTCTCTCTCAAACtggctgataa
tcgaagtatcaattgcagatgtagaacgataaacttgTTATACATAGTCC
TTCATAATTTAGATCaatattttgggaaaaaagGTTCACTTAAGGGTTTG
AATGTCAAAGAAATCTCACCATATTGTTTTAGTCGTTTGATTTGTAAAAA
TCTTCATATCCATTTAGGTTAGGCTGCAGTTGTGGGACACAGCAGGACAA
GAGAGATTCCGAAGTTTAATTCCAAGCTATATCAGAGATTCTTCTGTTGC
TGTGGTTGTTTATGATATTACAAGTAAGCTTTGCTTAATGCTTATGCATA
ACATTTTAGTCAAttgtaaattttaaatcaataaacttataaagactttc
tttttttttagataCAAATTCTTTTCATCAGACAAAGAAATGGATCGAGG
ACGTAAAATCAGAAAGAGGAGAAGACGTGGTCATAATGTTGGTTGGGAAT
AAAACTGATCTTTCTGACAGGAGGTCTGTATgaagtcaaaaactttcttc
aATATAATATTGTCATTTGGAATAAGTAGCTTTtgtagaaaattttttat
caaatgatcAATGTTTTAGTTCTCAAATCTTATGGCAAAACGGAATATGA
AACAGTGTACAATGTTGGCCATAATATTTAGCAAAATAGGAATCTCCCCt
gcataatttaaaaaaattgcatGTAGTTTTTAAGTGCCTTGATAACTTAA
GGTTGACGGTTGATGATCCAAAAGCTTGTGAATGGTCCGACTAGAGGCTG
AGAGTTTAGCCTGGATGCCataaacccctcccaaatcgaaatattcgatt
agATAAAGtagaaagcctgaaaatgtcatTCGCGCCCAAACTTTATATTC
TGCAAAACGCTAAAATACCTAGAAATGCCAACATATATAATTATTCTGAC
CACTATTgtagttttttataataattatataCCAGATCTCAATAGTTCTT
AATGACTTTTTGTCAcgtgaaaaataatttgtgaaggcaatatttgaatt
ttggtgtATCTAACTGACTAGCGAATTNGAAGTATCAATTGATgtcaaat
gagcttagtaaagctcaaattgcagatgtagaacgataaacttgTTATAC
ATAGTCCTTCATAATTTAGATCaatattttgggaaaaaagGTTCACTTAA
GGGTTTGAATGTCAAAGAAATCTCACCATATTGTTTTAGTCGTTTGATTT
GTAAAAATCTTCATATCCATTTAGGTTAGGCTGCAGTTGTGGGACACAGC
AGGACAAGAGAGATTCCGAAGTTTAATTCCAAGCTATATCAGAGATTCTT
CTGTTGCTGTGGTTGTTTATGATATTACAAGTAAGCTTTGCTTAATGCTT
ATGCATAACATTTTAGTCAAttgtaaattttaaatcaataaacttataaa
gactttctttttttttagataCAAATTCTTTTCATCAGACAAAGAAATGG
ATCGAGGACGTAAAATCAGAAAGAGGAGAAGACGTGGTCATAATGTTGGT
TGGGAATAAAACTGATCTTTCTGACAGGAGGTCTGTATgaagtcaaaaac
tttcttcaATATAATATTGTCATTTGGAATTAGTAGCTTTTGTAGAAAAT
CTTTTATCAAATGATCGATGTTTTAGTTCTCAAATCTTATTATGGCAAAA
CGGAAAATGAAACAGTCTACAATGTTGGCCATAATATTTAGCAAAATAGG
AATCTCCCtgcataattttaaaaaattgcatgTAGTTTTTAAGTGCCTTG
ATAACTTAAGGTTGGACTGTAGACTTTCAAGCTTGATGATCCAAAAGCTT
GTGAATGGTCCGACCAGAGGCTGAGAGTATAGCCTGGATGCCATataccc
ctcccaaatcgaaatattcgattagATAAAGtagaaagcctgaaaatgtc
atTCGCGCCCAAACTTTATATTCTGCAAAACGCTAAAATACCCAGAAATG
CCAACATATTCTGACCACCATTgtagttttttataataattatataCCAG
ATCTCAATAGTTCTTAATGACTTTTTGTCAcgtgaaaaataatttgtgaa
ggtaatatttgaattttggtgtATCTAACTGACTAGCGAATTCTCCttgt
ttatgtttcattttgTGTTGTTTCTCAGGCAAGTTTCCACAGAAGAAGGT
GAATCTAAAGCCAAAGAAATGGACGTGTTGTTTATAGAAACAAGTGCTAA
AGCAGGTCACAATGTTAAACAGGTAGAATATCATCAATGATGTACTATGT
ACGATTACTGCTAGATTGATCAATCTTTTGTTTACTTATTTGTAACCTTA
GTCAAATCTTCTTCTCTTTACCTTCTCAAcagcttttattttgaaattac
gttttgttttgtgtttttcttattttgacaaTAACTTAACGATGTATTTA
TTAACaagcttgtttatttttatttcttcagcTTTTCAGAAGGGTTGCAT
CAGCATTGCCTGGTATGGAAAAGCCAGAACCAGAGAGCAAACAAGGTGTC
ATTCCGTCACCGCTGGTACCACCAGAACCGGACCAAGCAGCTAGTAACTG
TTCATGTTAGATTCCagttaaaaaatttaatgaattgAGTTAAATATCAT
CGTCTATAGTCACAGTTATAGTTATTTTTAAGTTAGAAAGTCAGATCTTG
ACACACAAAAGATttggtttgaaatttcaaaGGTTATGTTGAATCAATGA
ATCGATACGCTGAAAGAGTTATATGACGTCATTCCACACTGGTTTTAATT
TAAAAACCGATCACCTTGTAGCGTCAAGACAAGGGTTGATAAATGTATTA
CGCATACAGAGAACTCATGCATTGTGAAATCTCAagaactttatattttt
atagCACGGGTTTACTTAAATAGTGTCTAGTGAGTATATAGATAGAGTTA
GAATCACCATAATTGAACTGGGAAGTAAACCTTGTTCAAGGAGGTTGATC
ACCGTATTTATTTTATTAGTTCCTACAGACCATTCAAAAagacaaaactt
tttaaagacgttatttattgtatttttcataaacaacttttttctgtgta
tgtttttatgtttctttttgtattatttttgttatatattttatttttgg
ataATAGTGCATTACATTTTTACACCCATTTTTATATTTAAACATTAGAC
GACAAGACTGTTTTATGACATTGtaaaactgaaatatttttatggTAGAA
ATTTTGCATTCACTTATTTTTTGtaacgtttttttaatattggTGTTAAA
TgagttttttgtactttttgttttgtttaatgCATTTGAAACATGTAACA
CAGACGAAtgtatcttttcaaaaaatatttaaagaataGCTTTAAGAATA
CTAAAATAGGGTGTCTGAtgataaaaattgttaaaaggGTCATACACGGT
AAATAATTAGTTAAGAAAAGGCTCTACTCTATGTGACATATTCTGATGAA
AGAccaattaaattcttaaaagGGTCATACAGTAAATAAGGCTCTACTCT
TGATGACATTTCTACCGAATTTTTCAGAAAGTGAATCTATGGATCCGGTG
ATAGATTAAAAACAGCTTCAGCCTCTGTATAAAATGCCTCTTGTGAGAGG
ATACCTTAACCTTTTCTCTTACAATGCAAAACAGTTATCACAGTAGAAAA
GTGACTAATTACTAACTGTTTGCTTGTAATGTTATGAGCTTCACTCTCAA
TACAGCTCGGTATGATAATATTGTTCTCCTactatttatttcatttttat
tttttttcatctttttatttttgtaactaAAATGAAATAC Coding sequence (CDS) from alignment at sc0000053:394945..400084+ >TCONS_00005418 ID=TCONS_00005418|Name=TCONS_00005418|organism=Clytia hemisphaerica|type=CDS|length=4368bp|location=Sequence derived from alignment at sc0000053:394945..400084+ (Clytia hemisphaerica) atgagCACGGTTGCAGAATTTGGAAACCCTTTGCGCAAATTCAAGTTGGT TTTTCTTGGGGAACAAAGTGttgGGAAGACATCAATAATCACTCGTTTTA TGTACGACAATTTTGATAACACTTATCAGGCGACAATTGGAATAGATTTT TTATCAAAGACAATGTATCTTGAAGACAGAACAGTTAGGCTGCAGTTGTG GGACACAGCAGGACAAGAGAGATTCCGAAGTTTAATTCCAAGCTATATCA GAGATTCTTCTGTTGCTGTGGTTGTTTATGATATTACAAataCAAATTCT TTTCATCAGACAAAGAAATGGATCGAGGACGTAAAATCAGAAAGAGGAGA AGACGTGGTCATAATGTTGGTTGGGAATAAAACTGATCTTTCTGACAGGA GGCAAGTTTCCACAGAAGAAGGTGAATCTAAAGCCAAAGAAATGGACGTG TTGTTTATAGAAACAAGTGCTAAAGCAGGTCACAATGTTAAACAGcTTTT CAGAAGGGTTGCATCAGCATTGCCTGGTATGGAAAAGCCAGAACCAGAGA GCAAACAAGGTGTCATTCCGTCACCGCTGGTACCACCAGAACCGGACCAA GCAGCTAGTAACTGTTCATGTTAGatgagCACGGTTGCAGAATTTGGAAA CCCTTTGCGCAAATTCAAGTTGGTTTTTCTTGGGGAACAAAGTGttgGGA AGACATCAATAATCACTCGTTTTATGTACGACAATTTTGATAACACTTAT CAGGCGACAATTGGAATAGATTTTTTATCAAAGACAATGTATCTTGAAGA CAGAACAGTTAGGCTGCAGTTGTGGGACACAGCAGGACAAGAGAGATTCC GAAGTTTAATTCCAAGCTATATCAGAGATTCTTCTGTTGCTGTGGTTGTT TATGATATTACAAataCAAATTCTTTTCATCAGACAAAGAAATGGATCGA GGACGTAAAATCAGAAAGAGGAGAAGACGTGGTCATAATGTTGGTTGGGA ATAAAACTGATCTTTCTGACAGGAGGCAAGTTTCCACAGAAGAAGGTGAA TCTAAAGCCAAAGAAATGGACGTGTTGTTTATAGAAACAAGTGCTAAAGC AGGTCACAATGTTAAACAGcTTTTCAGAAGGGTTGCATCAGCATTGCCTG GTATGGAAAAGCCAGAACCAGAGAGCAAACAAGGTGTCATTCCGTCACCG CTGGTACCACCAGAACCGGACCAAGCAGCTAGTAACTGTTCATGTTAGat gagCACGGTTGCAGAATTTGGAAACCCTTTGCGCAAATTCAAGTTGGTTT TTCTTGGGGAACAAAGTGttgGGAAGACATCAATAATCACTCGTTTTATG TACGACAATTTTGATAACACTTATCAGGCGACAATTGGAATAGATTTTTT ATCAAAGACAATGTATCTTGAAGACAGAACAGTTAGGCTGCAGTTGTGGG ACACAGCAGGACAAGAGAGATTCCGAAGTTTAATTCCAAGCTATATCAGA GATTCTTCTGTTGCTGTGGTTGTTTATGATATTACAAataCAAATTCTTT TCATCAGACAAAGAAATGGATCGAGGACGTAAAATCAGAAAGAGGAGAAG ACGTGGTCATAATGTTGGTTGGGAATAAAACTGATCTTTCTGACAGGAGG CAAGTTTCCACAGAAGAAGGTGAATCTAAAGCCAAAGAAATGGACGTGTT GTTTATAGAAACAAGTGCTAAAGCAGGTCACAATGTTAAACAGcTTTTCA GAAGGGTTGCATCAGCATTGCCTGGTATGGAAAAGCCAGAACCAGAGAGC AAACAAGGTGTCATTCCGTCACCGCTGGTACCACCAGAACCGGACCAAGC AGCTAGTAACTGTTCATGTTAGatgagCACGGTTGCAGAATTTGGAAACC CTTTGCGCAAATTCAAGTTGGTTTTTCTTGGGGAACAAAGTGttgGGAAG ACATCAATAATCACTCGTTTTATGTACGACAATTTTGATAACACTTATCA GGCGACAATTGGAATAGATTTTTTATCAAAGACAATGTATCTTGAAGACA GAACAGTTAGGCTGCAGTTGTGGGACACAGCAGGACAAGAGAGATTCCGA AGTTTAATTCCAAGCTATATCAGAGATTCTTCTGTTGCTGTGGTTGTTTA TGATATTACAAataCAAATTCTTTTCATCAGACAAAGAAATGGATCGAGG ACGTAAAATCAGAAAGAGGAGAAGACGTGGTCATAATGTTGGTTGGGAAT AAAACTGATCTTTCTGACAGGAGGCAAGTTTCCACAGAAGAAGGTGAATC TAAAGCCAAAGAAATGGACGTGTTGTTTATAGAAACAAGTGCTAAAGCAG GTCACAATGTTAAACAGcTTTTCAGAAGGGTTGCATCAGCATTGCCTGGT ATGGAAAAGCCAGAACCAGAGAGCAAACAAGGTGTCATTCCGTCACCGCT GGTACCACCAGAACCGGACCAAGCAGCTAGTAACTGTTCATGTTAGatga gCACGGTTGCAGAATTTGGAAACCCTTTGCGCAAATTCAAGTTGGTTTTT CTTGGGGAACAAAGTGttgGGAAGACATCAATAATCACTCGTTTTATGTA CGACAATTTTGATAACACTTATCAGGCGACAATTGGAATAGATTTTTTAT CAAAGACAATGTATCTTGAAGACAGAACAGTTAGGCTGCAGTTGTGGGAC ACAGCAGGACAAGAGAGATTCCGAAGTTTAATTCCAAGCTATATCAGAGA TTCTTCTGTTGCTGTGGTTGTTTATGATATTACAAataCAAATTCTTTTC ATCAGACAAAGAAATGGATCGAGGACGTAAAATCAGAAAGAGGAGAAGAC GTGGTCATAATGTTGGTTGGGAATAAAACTGATCTTTCTGACAGGAGGCA AGTTTCCACAGAAGAAGGTGAATCTAAAGCCAAAGAAATGGACGTGTTGT TTATAGAAACAAGTGCTAAAGCAGGTCACAATGTTAAACAGcTTTTCAGA AGGGTTGCATCAGCATTGCCTGGTATGGAAAAGCCAGAACCAGAGAGCAA ACAAGGTGTCATTCCGTCACCGCTGGTACCACCAGAACCGGACCAAGCAG CTAGTAACTGTTCATGTTAGatgagCACGGTTGCAGAATTTGGAAACCCT TTGCGCAAATTCAAGTTGGTTTTTCTTGGGGAACAAAGTGttgGGAAGAC ATCAATAATCACTCGTTTTATGTACGACAATTTTGATAACACTTATCAGG CGACAATTGGAATAGATTTTTTATCAAAGACAATGTATCTTGAAGACAGA ACAGTTAGGCTGCAGTTGTGGGACACAGCAGGACAAGAGAGATTCCGAAG TTTAATTCCAAGCTATATCAGAGATTCTTCTGTTGCTGTGGTTGTTTATG ATATTACAAataCAAATTCTTTTCATCAGACAAAGAAATGGATCGAGGAC GTAAAATCAGAAAGAGGAGAAGACGTGGTCATAATGTTGGTTGGGAATAA AACTGATCTTTCTGACAGGAGGCAAGTTTCCACAGAAGAAGGTGAATCTA AAGCCAAAGAAATGGACGTGTTGTTTATAGAAACAAGTGCTAAAGCAGGT CACAATGTTAAACAGcTTTTCAGAAGGGTTGCATCAGCATTGCCTGGTAT GGAAAAGCCAGAACCAGAGAGCAAACAAGGTGTCATTCCGTCACCGCTGG TACCACCAGAACCGGACCAAGCAGCTAGTAACTGTTCATGTTAGatgagC ACGGTTGCAGAATTTGGAAACCCTTTGCGCAAATTCAAGTTGGTTTTTCT TGGGGAACAAAGTGttgGGAAGACATCAATAATCACTCGTTTTATGTACG ACAATTTTGATAACACTTATCAGGCGACAATTGGAATAGATTTTTTATCA AAGACAATGTATCTTGAAGACAGAACAGTTAGGCTGCAGTTGTGGGACAC AGCAGGACAAGAGAGATTCCGAAGTTTAATTCCAAGCTATATCAGAGATT CTTCTGTTGCTGTGGTTGTTTATGATATTACAAataCAAATTCTTTTCAT CAGACAAAGAAATGGATCGAGGACGTAAAATCAGAAAGAGGAGAAGACGT GGTCATAATGTTGGTTGGGAATAAAACTGATCTTTCTGACAGGAGGCAAG TTTCCACAGAAGAAGGTGAATCTAAAGCCAAAGAAATGGACGTGTTGTTT ATAGAAACAAGTGCTAAAGCAGGTCACAATGTTAAACAGcTTTTCAGAAG GGTTGCATCAGCATTGCCTGGTATGGAAAAGCCAGAACCAGAGAGCAAAC AAGGTGTCATTCCGTCACCGCTGGTACCACCAGAACCGGACCAAGCAGCT AGTAACTGTTCATGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005418-exon-sc0000053-1491911889:394945..395066 | TCONS_00005418-exon-sc0000053-1491911889:394945..395066 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1510915933:394945..395066 | TCONS_00005418-exon-sc0000053-1510915933:394945..395066 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1575043694:394945..395066 | TCONS_00005418-exon-sc0000053-1575043694:394945..395066 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1491911889:395591..395649 | TCONS_00005418-exon-sc0000053-1491911889:395591..395649 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1510915933:395591..395649 | TCONS_00005418-exon-sc0000053-1510915933:395591..395649 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1575043694:395591..395649 | TCONS_00005418-exon-sc0000053-1575043694:395591..395649 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1491911889:395969..396022 | TCONS_00005418-exon-sc0000053-1491911889:395969..396022 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1510915933:395969..396022 | TCONS_00005418-exon-sc0000053-1510915933:395969..396022 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1575043694:395969..396022 | TCONS_00005418-exon-sc0000053-1575043694:395969..396022 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1491911889:396462..396567 | TCONS_00005418-exon-sc0000053-1491911889:396462..396567 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1510915933:396462..396567 | TCONS_00005418-exon-sc0000053-1510915933:396462..396567 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1575043694:396462..396567 | TCONS_00005418-exon-sc0000053-1575043694:396462..396567 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1491911889:396656..396767 | TCONS_00005418-exon-sc0000053-1491911889:396656..396767 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1510915933:396656..396767 | TCONS_00005418-exon-sc0000053-1510915933:396656..396767 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1575043694:396656..396767 | TCONS_00005418-exon-sc0000053-1575043694:396656..396767 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1491911889:398423..398516 | TCONS_00005418-exon-sc0000053-1491911889:398423..398516 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1510915933:398423..398516 | TCONS_00005418-exon-sc0000053-1510915933:398423..398516 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1575043694:398423..398516 | TCONS_00005418-exon-sc0000053-1575043694:398423..398516 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1491911889:398726..400084 | TCONS_00005418-exon-sc0000053-1491911889:398726..400084 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1510915933:398726..400084 | TCONS_00005418-exon-sc0000053-1510915933:398726..400084 | Clytia hemisphaerica | exon |
TCONS_00005418-exon-sc0000053-1575043694:398726..400084 | TCONS_00005418-exon-sc0000053-1575043694:398726..400084 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000053 | supercontig | sc0000053:394945..400084 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005525 | GTP binding |
GO:0003924 | GTPase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0003924 |
GTPase activity |
molecular_function |
GO:0005525 |
GTP binding |
Blast
BLAST of TCONS_00005418 vs. Swiss-Prot (Human)
Match: RAB6B (Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1) HSP 1 Score: 342.428 bits (877), Expect = 1.976e-113 Identity = 162/208 (77.88%), Postives = 183/208 (87.98%), Query Frame = 2
Query: 53 MSTVAEFGNPLRKFKLVFLGEQSVGKTSIITRFMYDNFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNTNSFHQTKKWIEDVKSERGEDVVIMLVGNKTDLSDRRQVSTEEGESKAKEMDVLFIETSAKAGHNVKQLFRRVASALPGMEKPEPESKQGVIPSPL-VPPEPDQAASNCSC 673
MS +FGNPLRKFKLVFLGEQSVGKTS+ITRFMYD+FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF QT KWI+DV++ERG DV+IMLVGNKTDL+D+RQ++ EEGE +AKE+ V+FIETSAK G+NVKQLFRRVASALPGME + +SK+G+I L P EP + CSC
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCSC 208
The following BLAST results are available for this feature:
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