TCONS_00005418-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005418-protein
Unique NameTCONS_00005418-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length207

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005418-protein ID=TCONS_00005418-protein|Name=TCONS_00005418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MSTVAEFGNPLRKFKLVFLGEQSVGKTSIITRFMYDNFDNTYQATIGIDF
LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNTNS
FHQTKKWIEDVKSERGEDVVIMLVGNKTDLSDRRQVSTEEGESKAKEMDV
LFIETSAKAGHNVKQLFRRVASALPGMEKPEPESKQGVIPSPLVPPEPDQ
AASNCSC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003088XLOC_003088Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005418TCONS_00005418Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 152..174
score: 38.51
coord: 14..35
score: 39.8
coord: 37..53
score: 33.13
coord: 117..130
score: 55.26
coord: 55..77
score: 48.05
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 11..177
e-value: 2.9E-35
score: 133.1
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 16..176
e-value: 2.7E-12
score: 37.7
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 19..205
e-value: 7.5E-5
score: 20.0
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 14..177
e-value: 1.3E-84
score: 297.1
NoneNo IPR availableGENE3D3.40.50.300coord: 78..174
e-value: 5.1E-38
score: 128.7
NoneNo IPR availableGENE3D3.30.70.1390coord: 12..77
e-value: 1.8E-27
score: 94.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..207
NoneNo IPR availablePROSITEPS51419RABcoord: 9..207
score: 33.036
NoneNo IPR availableCDDcd01861Rab6coord: 14..174
e-value: 2.55828E-118
score: 334.976
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 13..169
e-value: 8.2E-30
score: 101.7
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 15..173
e-value: 1.8E-59
score: 199.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 12..185

Blast
[Close]
BLAST of TCONS_00005418-protein vs. Swiss-Prot (Human)
Match: RAB6B (Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.550e-121
Identity = 162/208 (77.88%), Postives = 183/208 (87.98%), Query Frame = 0 
Query:    1 MSTVAEFGNPLRKFKLVFLGEQSVGKTSIITRFMYDNFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNTNSFHQTKKWIEDVKSERGEDVVIMLVGNKTDLSDRRQVSTEEGESKAKEMDVLFIETSAKAGHNVKQLFRRVASALPGMEKPEPESKQGVIPSPL-VPPEPDQAASNCSC 207
            MS   +FGNPLRKFKLVFLGEQSVGKTS+ITRFMYD+FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF QT KWI+DV++ERG DV+IMLVGNKTDL+D+RQ++ EEGE +AKE+ V+FIETSAK G+NVKQLFRRVASALPGME  + +SK+G+I   L  P EP  +   CSC
Sbjct:    1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCSC 208
The following BLAST results are available for this feature:
BLAST of TCONS_00005418-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB6B1.550e-12177.88Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6... [more]
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