TCONS_00005416 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005416
Unique NameTCONS_00005416
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1002

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005416 ID=TCONS_00005416|Name=TCONS_00005416|organism=Clytia hemisphaerica|type=transcript|length=1002bp
TGACAAACTCTCTCAACTTCATTCCAATCATACGGCTGAAATTCTGGATT
CTACGCTCAACGTATGGGTTGAGTGGTCTTCTCGTACCCCATGGTCTTCT
TGTACCCCATGGTCTTCTTGTACCCCATGGTCTTCTGGTTCCCCATGGTC
GTCTTGTACCCCATGGTCGTCTTGTACCCCATGGTCGTCTGGTTCCCCAA
GGTTTTCTGGTACCCCAAGGTCTTCTGGTTCCCCATGGTCGTCTTGTACC
CCATGGTCGTCTTGTACCCCATGGTCGTCTGGTCCACCATGGTCTTCTGG
TGCCCCATGGTCTTCTTGTACCCCATGGTCTTCTTGTTCCCCATGGTCGT
CTGGTGCCCCATGGTCTTCTAGTACCCCATGGTCGTCTAGTTCCCCAAGG
TCTTGTACCCCATGGTCTTCTGGTACCCCAAGGTCTTGTACCCCATGGTC
GTCTAGTACTCCACCAGTATGGCCTGGTAGGACCCCAAGGATCGTATGTT
GGTCGATCAGTATTCCACGGTCGTCTGGTACTCCACCAGTAAGGTCGGGT
GGGTCCCCAAGGATCATATGTTCGTGGTCGGTCAGTTCCACGGGGTGCCG
TGCTCCACCAATAAGGTCTTGTGGGTCCCCATGGATCGTATGTAGTTCTG
GGTCGTCTTGGGGTCCAGTAAGGTTGAACAATACGTTTTGCGTTGACTTT
GTTATTGTTTCGGTTTTCGGTGGGAGTTGGTTGGGTTACGTAAATTTCGT
CATCTTCGTAATAGTCTTCTTGAACTTCCACAACTGAAACAAATTattat
ctatattataatacgcttaaatcggaactctcccattctcgcatgaggct
ttttcgctagggatttttaaatacacggcaatttttttcgcgcctttttg
aTTGTATATTCAATTCTATTCGCCAAGTGCACTTCCATTCAAGAGAGCAC
ATTTCTCCTTGATGGAGAAACACAACTGACTGTGCAATAGCACTATCAGC
AT
Run BLAST on NCBI

transcript from alignment at sc0000053:347281..348408+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005416 ID=TCONS_00005416|Name=TCONS_00005416|organism=Clytia hemisphaerica|type=transcript|length=1128bp|location=Sequence derived from alignment at sc0000053:347281..348408+ (Clytia hemisphaerica)
TGACAAACTCTCTCAACTTCATTCCAATCATACGGCTGAAATTCTGGATT
CTACGCTCAACGTATGGGTTGAGTGGTCTTCTCGTACCCCATGGTCTTCT
TGTACCCCATGGTCTTCTTGTACCCCATGGTCGTCTTGTTCCCCAAGGTC
GTCTTGTACCCCAAGGTCTTCTGGTTCCCCATGGTCGTCTTGTACCCCAT
GGTCGTCTTGTACCCCATGGTCGTCTGGTTCCCCAAGGTTTTCTGGTACC
CCAAGGTCTTCTGGTTCCCCATGGTCGTCTTGTACCCCATGGTCGTCTTG
TACCCCATGGTCGTCTGGTCCACCATGGTCTTCTGGTGCCCCATGGTCGT
CTTGTTCCCCAAGGTCGTCTTGTACCCCATGGTCGTCTGGTCCACCATGG
TCTTCTGGTGCCCCATGGTCGTCTTGTTCCCCAAGGTCTTCTTGTACCCC
ATGGTCTTCTTGTTCCCCATGGTCGTCTGGTGCCCCATGGTCTTCTAGTA
CCCCATGGTCGTCTAGTTCCCCAAGGTCTTGTACCCCATGGTCTTCTGGT
ACCCCAAGGTCTTGTACCCCATGGTCGTCTAGTACTCCACCAGTATGGCC
TGGTAGGACCCCAAGGATCGTATGTTGGTCGATCAGTATTCCACGGTCGT
CTGGTACTCCACCAGTAAGGTCGGGTGGGTCCCCAAGGATCATATGTTCG
TGGTCGGTCAGTTCCACGGGGTGCCGTGCTCCACCAATAAGGTCTTGTGG
GTCCCCATGGATCGTATGTAGTTCTGGGTCGTCTTGGGGTCCAGTAAGGT
TGAACAATACGTTTTGCGTTGACTTTGTTATTGTTTCGGTTTTCGGTGGG
AGTTGGTTGGGTTACGTAAATTTCGTCATCTTCGTAATAGTCTTCTTGAA
CTTCCACAACTGAAACAAATTattatctatattataatacgcttaaatcg
gaactctcccattctcgcatgaggctttttcgctagggatttttaaatac
acggcaatttttttcgcgcctttttgaTTGTATATTCAATTCTATTCGCC
AAGTGCACTTCCATTCAAGAGAGCACATTTCTCCTTGATGGAGAAACACA
ACTGACTGTGCAATAGCACTATCAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003087XLOC_003087Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005416-exon-sc0000053-1491911889:347281..347409TCONS_00005416-exon-sc0000053-1491911889:347281..347409Clytia hemisphaericaexon
TCONS_00005416-exon-sc0000053-1510915933:347281..347409TCONS_00005416-exon-sc0000053-1510915933:347281..347409Clytia hemisphaericaexon
TCONS_00005416-exon-sc0000053-1575043694:347281..347409TCONS_00005416-exon-sc0000053-1575043694:347281..347409Clytia hemisphaericaexon
TCONS_00005416-exon-sc0000053-1491911889:347446..347625TCONS_00005416-exon-sc0000053-1491911889:347446..347625Clytia hemisphaericaexon
TCONS_00005416-exon-sc0000053-1510915933:347446..347625TCONS_00005416-exon-sc0000053-1510915933:347446..347625Clytia hemisphaericaexon
TCONS_00005416-exon-sc0000053-1575043694:347446..347625TCONS_00005416-exon-sc0000053-1575043694:347446..347625Clytia hemisphaericaexon
TCONS_00005416-exon-sc0000053-1491911889:347716..348408TCONS_00005416-exon-sc0000053-1491911889:347716..348408Clytia hemisphaericaexon
TCONS_00005416-exon-sc0000053-1510915933:347716..348408TCONS_00005416-exon-sc0000053-1510915933:347716..348408Clytia hemisphaericaexon
TCONS_00005416-exon-sc0000053-1575043694:347716..348408TCONS_00005416-exon-sc0000053-1575043694:347716..348408Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:347281..348408 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.299939	0.625654	0	0	0.456696	0.24791	2.66164	4.06301	2.50756	2.39984	5.32916	1.5973	15.8448	15.1569	17.0722	25.9851	6.07303	5.09002	25.2882	40.334	8.70805	10.5966	4.24392	7.88737	3.89737	4.47082	3.11988	3.21973	56.0739	51.8675
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top