TCONS_00005407 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005407
Unique NameTCONS_00005407
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005407 ID=TCONS_00005407|Name=TCONS_00005407|organism=Clytia hemisphaerica|type=transcript|length=392bp
AGAAAGCTGGTTGTTCGTATTGTACGTGTAGTTTTTTTACTTGAATCTTT
ATAAGTTTGGAGTTTGAGCAGACAATTTcataaatcattaaaaaaattga
caatggcGTATGCTGCATAAAAATACCTCGGTggtgaaattaattttgat
ttgaagatTTACAGAAgcggtattttttcaataaattcaaaactgaagaa
gaaaagtgaaaaggATCGCTCTGGCAAGTGACCTTTTTAGCCTCAAAGAG
ATTTTAGAGTAACCGAAGTGGCTGTGGGCTAGATTAGCCTTTGAAAGCAC
TATTACATATGGATTCATTAGAAGAGGCTAGAGATGATaaatacaatgaa
aaacatATTCAAGATCGAAAGACTTGGTTTATATCAGAGTAA
Run BLAST on NCBI

transcript from alignment at sc0000053:5688..6671+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005407 ID=TCONS_00005407|Name=TCONS_00005407|organism=Clytia hemisphaerica|type=transcript|length=984bp|location=Sequence derived from alignment at sc0000053:5688..6671+ (Clytia hemisphaerica)
AGAAAGCTGGTTGTTCGTATTGTACGTGTAGTTTTTTTACTTGAATCTTT
ATAAGTTTGGAGTTTGAGCAGACAATTTcataaatcattaaaaaaattga
caatggcGTATGCTGCATAAAAATACCTCGGTggtgaaattaattttgat
ttgaagatTTACAGAAgcggtattttttcaataaattcaaaactgaagaa
gaaaagtgaaaagtaagaACATGGAGTATAATGATAGGAAATCCTCTTTC
TCGAACTTGCGAGGGGGAGTATTCGTTCCATATCATGAAAGCCAAAAGGA
GTACTAGTTTGTGAGTGGTGATGGGTGTGTCCGAgctaaaaagcaaaaaa
taagagATAACATGACACGAGataacattttttgatgtttgtgggacctt
tcaaaaaatataccttTCTTCCTTACAGANTTTTTTGATGTTTGTggaac
ctttaaaaaaaaaatactattcttCCTTACAGAACTTTGCTCCAATTTTC
AGGGAAACATGACTTTTGGATCCTTTCAGAGAGTAGATTTGATTTTCGTT
AACCTTTTGAGAAATTCCTAAGGTTTGAGAAAAAGGTACGCATACCACTC
GCACATATCATTTGACGctattgccccatttgcccctctaaaagaaaatc
aatctCTAATACCCAGTAGTAGGAAAGACATTGTGACGGATAGAATTATG
TTGctggaaattttcattcttttatcTTTAGGGATCGCTCTGGATNAAAG
ACATTGTGACGGATAGAATTATGTTGctggaaattttcattcttttattt
ttagggATCGCTCTGGCAAGTGACCTTTTTAGCCTCAAAGAGATTTTAGA
GTAACCGAAGTGGCTGTGGGCTAGATTAGCCTTTGAAAGCACTATTACAT
ATGGATTCATTAGAAGAGGCTAGAGATGATaaatacaatgaaaaacatAT
TCAAGATCGAAAGACTTGGTTTATATCAGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003081XLOC_003081Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005407-exon-sc0000053-1491911889:5688..5899TCONS_00005407-exon-sc0000053-1491911889:5688..5899Clytia hemisphaericaexon
TCONS_00005407-exon-sc0000053-1510915933:5688..5899TCONS_00005407-exon-sc0000053-1510915933:5688..5899Clytia hemisphaericaexon
TCONS_00005407-exon-sc0000053-1575043694:5688..5899TCONS_00005407-exon-sc0000053-1575043694:5688..5899Clytia hemisphaericaexon
TCONS_00005407-exon-sc0000053-1491911889:6492..6671TCONS_00005407-exon-sc0000053-1491911889:6492..6671Clytia hemisphaericaexon
TCONS_00005407-exon-sc0000053-1510915933:6492..6671TCONS_00005407-exon-sc0000053-1510915933:6492..6671Clytia hemisphaericaexon
TCONS_00005407-exon-sc0000053-1575043694:6492..6671TCONS_00005407-exon-sc0000053-1575043694:6492..6671Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:5688..6671 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.189051	1.06861	1.71186	0.261441	0.413189	0.456419	0.466684	0	0	0.392827	0	18.4838	12.7048	2.18995	1.86391	0.850748	1.04418	14.8664	24.2034	2.31646	1.09713	18.7643	31.5552	13.9828	14.773	2.54768	5.39033	1.24566	0.825144
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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